MBTD1 (mbt domain containing 1) - Rat Genome Database

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Gene: MBTD1 (mbt domain containing 1) Chlorocebus sabaeus
Analyze
Symbol: MBTD1
Name: mbt domain containing 1
RGD ID: 18661596
Description: ENCODES a protein that exhibits NuA4 histone acetyltransferase complex binding (ortholog); INVOLVED IN double-strand break repair via homologous recombination (ortholog); embryonic skeletal system development (ortholog); positive regulation of double-strand break repair via homologous recombination (ortholog); FOUND IN NuA4 histone acetyltransferase complex (ortholog); nucleosome (ortholog); site of double-strand break (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: MBT domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11642,085,106 - 42,169,856 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1642,084,397 - 42,163,828 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607712,795,986 - 12,879,975 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MBTD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11642,085,106 - 42,169,856 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1642,084,397 - 42,163,828 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607712,795,986 - 12,879,975 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
MBTD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381751,177,425 - 51,260,958 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1751,177,425 - 51,260,163 (-)EnsemblGRCh38hg38GRCh38
GRCh371749,254,786 - 49,337,410 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361746,623,944 - 46,649,738 (-)NCBINCBI36Build 36hg18NCBI36
Build 341746,623,960 - 46,649,738NCBI
Celera1745,716,030 - 45,798,621 (-)NCBICelera
Cytogenetic Map17q21.33NCBI
HuRef1744,624,037 - 44,706,662 (-)NCBIHuRef
CHM1_11749,319,419 - 49,402,029 (-)NCBICHM1_1
T2T-CHM13v2.01752,044,724 - 52,127,757 (-)NCBIT2T-CHM13v2.0
Mbtd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391193,776,635 - 93,837,815 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1193,776,678 - 93,837,811 (+)EnsemblGRCm39 Ensembl
GRCm381193,885,850 - 93,946,989 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1193,885,852 - 93,946,985 (+)EnsemblGRCm38mm10GRCm38
MGSCv371193,747,533 - 93,808,298 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361193,728,499 - 93,761,409 (+)NCBIMGSCv36mm8
Celera11103,498,655 - 103,562,001 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1158.86NCBI
Mbtd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81079,336,041 - 79,392,315 (+)NCBIGRCr8
mRatBN7.21078,839,140 - 78,895,413 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1078,839,036 - 78,893,720 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1083,450,270 - 83,506,257 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01082,948,368 - 83,004,356 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01078,419,664 - 78,475,720 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01081,588,233 - 81,645,532 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1081,592,114 - 81,642,663 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01081,418,282 - 81,475,494 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1077,635,726 - 77,691,812 (+)NCBICelera
Cytogenetic Map10q26NCBI
Mbtd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545110,662,722 - 10,731,012 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545110,663,472 - 10,731,012 (+)NCBIChiLan1.0ChiLan1.0
MBTD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21967,365,166 - 67,449,420 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11772,172,256 - 72,256,317 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01745,267,275 - 45,350,751 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11750,137,395 - 50,220,488 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1750,137,395 - 50,215,078 (-)Ensemblpanpan1.1panPan2
MBTD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1927,010,554 - 27,078,417 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl927,013,483 - 27,078,202 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha926,338,778 - 26,407,068 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0927,804,430 - 27,872,566 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl927,804,433 - 27,872,641 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1926,570,566 - 26,638,792 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0926,830,120 - 26,898,233 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0926,960,205 - 27,028,496 (-)NCBIUU_Cfam_GSD_1.0
Mbtd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560226,442,009 - 26,508,008 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649010,587,010 - 10,630,049 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649010,567,146 - 10,633,130 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MBTD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1227,450,806 - 27,526,194 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11227,450,809 - 27,526,412 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21227,519,110 - 27,594,769 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Mbtd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247956,900,281 - 6,960,903 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247956,900,281 - 6,966,249 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 33 3 37
Low 3 17 23
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008011427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008011429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008011430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008011431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008011432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008011433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008011434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008011435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008011436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008011437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037993085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037993086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037993087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037993088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037993089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037993090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037993091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037993092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037993093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037993094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037993095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037993096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037993097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037993098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037993099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005238682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000003549   ⟹   ENSCSAP00000001826
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1642,084,397 - 42,163,828 (+)Ensembl
RefSeq Acc Id: XM_037993085   ⟹   XP_037849013
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607712,795,986 - 12,879,975 (+)NCBI
RefSeq Acc Id: XM_037993086   ⟹   XP_037849014
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607712,795,986 - 12,879,975 (+)NCBI
RefSeq Acc Id: XM_037993087   ⟹   XP_037849015
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607712,795,986 - 12,879,975 (+)NCBI
RefSeq Acc Id: XM_037993088   ⟹   XP_037849016
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607712,795,986 - 12,879,975 (+)NCBI
RefSeq Acc Id: XM_037993089   ⟹   XP_037849017
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607712,796,190 - 12,879,975 (+)NCBI
RefSeq Acc Id: XM_037993090   ⟹   XP_037849018
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607712,796,160 - 12,879,975 (+)NCBI
RefSeq Acc Id: XM_037993091   ⟹   XP_037849019
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607712,796,190 - 12,879,975 (+)NCBI
RefSeq Acc Id: XM_037993092   ⟹   XP_037849020
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607712,796,025 - 12,879,975 (+)NCBI
RefSeq Acc Id: XM_037993093   ⟹   XP_037849021
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607712,796,189 - 12,879,975 (+)NCBI
RefSeq Acc Id: XM_037993094   ⟹   XP_037849022
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607712,796,025 - 12,879,975 (+)NCBI
RefSeq Acc Id: XM_037993095   ⟹   XP_037849023
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607712,796,189 - 12,879,975 (+)NCBI
RefSeq Acc Id: XM_037993096   ⟹   XP_037849024
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607712,796,160 - 12,879,975 (+)NCBI
RefSeq Acc Id: XM_037993097   ⟹   XP_037849025
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607712,795,986 - 12,879,975 (+)NCBI
RefSeq Acc Id: XM_037993098   ⟹   XP_037849026
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607712,795,986 - 12,879,975 (+)NCBI
RefSeq Acc Id: XM_037993099   ⟹   XP_037849027
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607712,836,680 - 12,879,975 (+)NCBI
RefSeq Acc Id: XR_005238682
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607712,795,986 - 12,865,163 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSCSAP00000001826   ⟸   ENSCSAT00000003549
RefSeq Acc Id: XP_037849013   ⟸   XM_037993085
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037849025   ⟸   XM_037993097
- Peptide Label: isoform X8
RefSeq Acc Id: XP_037849014   ⟸   XM_037993086
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037849015   ⟸   XM_037993087
- Peptide Label: isoform X3
RefSeq Acc Id: XP_037849026   ⟸   XM_037993098
- Peptide Label: isoform X9
- UniProtKB: A0A0D9QZN7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037849016   ⟸   XM_037993088
- Peptide Label: isoform X4
RefSeq Acc Id: XP_037849022   ⟸   XM_037993094
- Peptide Label: isoform X6
RefSeq Acc Id: XP_037849020   ⟸   XM_037993092
- Peptide Label: isoform X6
RefSeq Acc Id: XP_037849018   ⟸   XM_037993090
- Peptide Label: isoform X6
RefSeq Acc Id: XP_037849024   ⟸   XM_037993096
- Peptide Label: isoform X7
RefSeq Acc Id: XP_037849021   ⟸   XM_037993093
- Peptide Label: isoform X6
RefSeq Acc Id: XP_037849023   ⟸   XM_037993095
- Peptide Label: isoform X6
RefSeq Acc Id: XP_037849019   ⟸   XM_037993091
- Peptide Label: isoform X6
RefSeq Acc Id: XP_037849017   ⟸   XM_037993089
- Peptide Label: isoform X5
RefSeq Acc Id: XP_037849027   ⟸   XM_037993099
- Peptide Label: isoform X10


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000005517 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000003549.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.140 UniProtKB/TrEMBL
  3.30.60.160 UniProtKB/TrEMBL
InterPro Mbt UniProtKB/TrEMBL
  Znf_FCS UniProtKB/TrEMBL
  Znf_FCS_sf UniProtKB/TrEMBL
NCBI Gene MBTD1 ENTREZGENE
PANTHER MBT DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  POLYCOMB GROUP PROTEIN UniProtKB/TrEMBL
Pfam MBT UniProtKB/TrEMBL
  zf-FCS_1 UniProtKB/TrEMBL
PROSITE MBT UniProtKB/TrEMBL
  ZF_FCS UniProtKB/TrEMBL
SMART MBT UniProtKB/TrEMBL
Superfamily-SCOP Tudor/PWWP/MBT UniProtKB/TrEMBL
UniProt A0A0D9QZN7 ENTREZGENE, UniProtKB/TrEMBL