EDN3 (endothelin 3) - Rat Genome Database

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Gene: EDN3 (endothelin 3) Chlorocebus sabaeus
Analyze
Symbol: EDN3
Name: endothelin 3
RGD ID: 18605675
Description: ENCODES a protein that exhibits endothelin B receptor binding (inferred); hormone activity (inferred); INVOLVED IN artery smooth muscle contraction (ortholog); cell population proliferation (ortholog); establishment of localization in cell (ortholog); PARTICIPATES IN endothelin signaling pathway; ASSOCIATED WITH Bradycardia (ortholog); congenital central hypoventilation syndrome (ortholog); genetic disease (ortholog); FOUND IN extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: endothelin-3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.124,814,447 - 4,839,950 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl24,814,140 - 4,839,626 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605052,860,201 - 52,885,678 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
EDN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.124,814,447 - 4,839,950 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl24,814,140 - 4,839,626 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605052,860,201 - 52,885,678 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
EDN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382059,300,611 - 59,325,992 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2059,300,443 - 59,325,992 (+)EnsemblGRCh38hg38GRCh38
GRCh372057,875,666 - 57,901,047 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362057,308,894 - 57,334,442 (+)NCBINCBI36Build 36hg18NCBI36
Build 342057,308,893 - 57,334,441NCBI
Celera2054,616,141 - 54,641,690 (+)NCBICelera
Cytogenetic Map20q13.32NCBI
HuRef2054,662,632 - 54,688,190 (+)NCBIHuRef
CHM1_12057,776,830 - 57,802,379 (+)NCBICHM1_1
T2T-CHM13v2.02061,083,933 - 61,109,315 (+)NCBIT2T-CHM13v2.0
Edn3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392174,602,412 - 174,625,835 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2174,602,412 - 174,625,835 (+)EnsemblGRCm39 Ensembl
GRCm382174,760,619 - 174,784,042 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2174,760,619 - 174,784,042 (+)EnsemblGRCm38mm10GRCm38
MGSCv372174,586,274 - 174,609,543 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362174,403,712 - 174,426,981 (+)NCBIMGSCv36mm8
Celera2180,720,524 - 180,743,869 (+)NCBICelera
Cytogenetic Map2H4NCBI
cM Map298.1NCBI
Edn3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83183,980,458 - 184,004,958 (+)NCBIGRCr8
mRatBN7.23163,562,307 - 163,586,636 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3163,562,520 - 163,585,093 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3167,361,313 - 167,383,973 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03175,856,634 - 175,879,291 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03173,602,123 - 173,624,707 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03172,856,730 - 172,879,276 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3172,856,733 - 172,880,450 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03178,903,017 - 178,925,563 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43166,491,368 - 166,514,051 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3162,730,251 - 162,752,801 (+)NCBICelera
Cytogenetic Map3q43NCBI
Edn3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955445215,859 - 237,760 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955445215,910 - 238,153 (-)NCBIChiLan1.0ChiLan1.0
EDN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22165,065,183 - 65,090,932 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12065,058,300 - 65,084,054 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02055,652,770 - 55,678,486 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12057,012,926 - 57,038,570 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2057,012,926 - 57,038,570 (+)Ensemblpanpan1.1panPan2
EDN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12444,024,553 - 44,054,727 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2444,033,419 - 44,054,050 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2443,279,240 - 43,297,953 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02444,892,278 - 44,922,442 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2444,901,164 - 44,921,767 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12444,002,694 - 44,021,373 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02444,121,425 - 44,140,136 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02444,781,653 - 44,800,349 (+)NCBIUU_Cfam_GSD_1.0
Edn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640181,539,619 - 181,562,016 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365301,744,199 - 1,765,027 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365301,744,216 - 1,766,602 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EDN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1759,425,495 - 59,448,362 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11759,418,667 - 59,448,382 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21766,846,562 - 66,867,781 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Edn3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474125,658,726 - 25,680,763 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 19 13 59
Below cutoff 17 6 1

Sequence


RefSeq Acc Id: ENSCSAT00000013705   ⟹   ENSCSAP00000011695
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl24,814,140 - 4,839,626 (-)Ensembl
RefSeq Acc Id: XM_008012555   ⟹   XP_008010746
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.124,814,447 - 4,839,950 (-)NCBI
Vero_WHO_p1.0NW_02366605052,860,201 - 52,885,678 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008012563   ⟹   XP_008010754
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.124,814,447 - 4,839,948 (-)NCBI
Vero_WHO_p1.0NW_02366605052,860,201 - 52,885,678 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008010746 (Get FASTA)   NCBI Sequence Viewer  
  XP_008010754 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000011695.1
RefSeq Acc Id: XP_008010746   ⟸   XM_008012555
- Peptide Label: isoform X1
RefSeq Acc Id: XP_008010754   ⟸   XM_008012563
- Peptide Label: isoform X2
RefSeq Acc Id: ENSCSAP00000011695   ⟸   ENSCSAT00000013705


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000015608 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000013705.1 UniProtKB/TrEMBL
InterPro Endothelin UniProtKB/TrEMBL
  Endothelin_toxin_CS UniProtKB/TrEMBL
  Endothln-like_toxin UniProtKB/TrEMBL
KEGG Report csab:103243376 UniProtKB/TrEMBL
NCBI Gene EDN3 ENTREZGENE
PANTHER ENDOTHELIN-3 UniProtKB/TrEMBL
  PTHR13874 UniProtKB/TrEMBL
Pfam Endothelin UniProtKB/TrEMBL
PRINTS ENDOTHELIN UniProtKB/TrEMBL
PROSITE ENDOTHELIN UniProtKB/TrEMBL
SMART END UniProtKB/TrEMBL
UniProt A0A0D9RSV6_CHLSB UniProtKB/TrEMBL