CUNH1orf146 (chromosome unknown C1orf146 homolog)

Gene: CUNH1orf146 (chromosome unknown C1orf146 homolog) Chlorocebus sabaeus

Analyze

Symbol:

CUNH1orf146 (Ensembl: C1orf146)

Name:

chromosome unknown C1orf146 homolog (Ensembl:chromosome 1 open reading frame 146)

RGD ID:

18550326

Description:

INVOLVED IN reciprocal meiotic recombination (inferred); synaptonemal complex assembly (inferred); FOUND IN chromosome (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

C20H1orf146; chromosome 20 open reading frame, human C1orf146; uncharacterized protein C1orf146 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	41,007,096 - 41,030,494 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	41,007,231 - 41,016,109 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	76,981,537 - 76,991,641 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

reciprocal meiotic recombination (IEA)

synaptonemal complex assembly (IEA)

Cellular Component

chromosome (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

CUNH1orf146
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	41,007,096 - 41,030,494 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	41,007,231 - 41,016,109 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	76,981,537 - 76,991,641 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

C1orf146
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	92,217,915 - 92,245,813 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	92,217,915 - 92,245,813 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	92,683,472 - 92,711,370 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	92,456,161 - 92,483,955 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	90,929,995 - 90,957,788 (+)	NCBI		Celera
Cytogenetic Map	1	p22.1	NCBI
HuRef	1	90,803,785 - 90,831,573 (+)	NCBI		HuRef
CHM1_1	1	92,798,338 - 92,826,125 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	92,062,827 - 92,090,715 (+)	NCBI		T2T-CHM13v2.0

1700028K03Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	107,682,586 - 107,699,415 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	107,682,575 - 107,699,408 (+)	Ensembl		GRCm39 Ensembl
GRCm39 Ensembl	5	107,655,487 - 107,728,462 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	107,534,720 - 107,551,549 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	107,507,621 - 107,580,596 (+)	Ensembl	GRCm38		mm10	GRCm38
GRCm38.p6 Ensembl	5	107,534,709 - 107,551,542 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	107,963,730 - 107,980,561 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	107,775,013 - 107,788,679 (+)	NCBI		MGSCv36	mm8
Celera	5	104,648,002 - 104,664,837 (+)	NCBI		Celera
Cytogenetic Map	5	F	NCBI
cM Map	5	52.23	NCBI

C14h1orf146
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	2,375,311 - 2,395,331 (-)	NCBI		GRCr8
mRatBN7.2	14	2,230,404 - 2,250,420 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	2,231,451 - 2,270,782 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	2,109,328 - 2,152,988 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	3,411,143 - 3,454,799 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	2,108,678 - 2,148,055 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	3,247,640 - 3,288,017 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	3,248,080 - 3,288,017 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	3,251,076 - 3,291,453 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	2,790,182 - 2,829,512 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	14	2,250,008 - 2,289,344 (-)	NCBI		Celera
Cytogenetic Map	14	p22	NCBI

CUNH1orf146
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955423	2,233,543 - 2,258,941 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955423	2,233,445 - 2,251,205 (-)	NCBI	ChiLan1.0	ChiLan1.0

C1H1orf146
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	134,778,217 - 134,832,556 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	133,931,195 - 133,984,147 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	94,876,468 - 94,907,783 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	93,618,905 - 93,646,763 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	93,618,905 - 93,646,763 (+)	Ensembl	panpan1.1		panPan2

C6H1orf146
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	56,665,170 - 56,723,591 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	56,679,039 - 56,723,652 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	59,364,321 - 59,429,209 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	57,042,929 - 57,101,410 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	57,056,957 - 57,076,663 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	56,722,620 - 56,781,046 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	56,701,082 - 56,759,509 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	57,161,694 - 57,220,137 (-)	NCBI		UU_Cfam_GSD_1.0

CUNH1orf146
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	102,099,320 - 102,119,874 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936537	6,828,102 - 6,848,695 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936537	6,828,179 - 6,848,653 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C4H1orf146
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	4	124,813,337 - 124,843,305 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

CUNH1orf146
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624742	5,478,361 - 5,530,606 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium
Low	1	7	11
Below cutoff	20	12	39

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007977961	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007977962	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005241931	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_494130	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_494131	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000017067 ⟹ ENSCSAP00000016558

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	20	41,007,231 - 41,016,109 (-)	Ensembl

RefSeq Acc Id:

XM_007977961 ⟹ XP_007976152

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	20	41,007,096 - 41,030,494 (-)	NCBI
Vero_WHO_p1.0	NW_023666033	76,981,537 - 76,991,641 (+)	NCBI

Sequence:

show sequence

TCGAACTTCTAACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGA
GCACCCGACCTACAAATCTTGTTTTTACTTAACCACTTCCAGCTTCCTGCAAACCAGAAGCAGG
AACCAGAAGTGCGGGAAAGGTTTGCGGGGTCTGCGGTTGCGCAGTAGCCCAGCGGCCGCTGAAC
CCTGCCCCAGGCACCCTGGGTGCCCCGCCCCGCCGGCGATGCGTCTTTCTGCTCGCAGAACGTT
CTCGAAGTTTGGTAAACCCTGAGCAGTCTCTGAGGACCTGGTGAGCAGATTGTTGCACCATTAG
AAGCTAGGGTGATCTACAGACAGACAGATGGCTGAAAGTGGAAAAGAAAAAATAAAATGGACAA
CCACCATTATTATTAGCTCATCTCTTAAGAGTTATGAAGTTGCAACTGCCCTAGAAAATCGAAG
CCACAAAGTTCGATATTCAGATTCAGTGGAAAATGGATCAATTATATTTTCTCTTTCTGGAGTT
GCATTTTTATTAATGGATACTAAGGAATGTATTCTGACAACCGAAGAAATATTGCTAGCCAAAA
TTGAGAAATTTATTAACATTCACCAGAATAGTTTTTTGGTTTTGTCTGCTGCCCTCCATGGGCC
TGAAGAATGGAAACTGATGTTCAGAATTCAGCAGAGATTCCTGGGTCGTAACTTACGAATACTT
CCAGTACACAACACAGTAAATGCTATTAATCTTATGTGCACTATAGCAAAGACTACCTCCAAAC
CATACATAGATAGCATTTGCTACAGAATGATAACAGCTAAAGCTTACATCATTGAGCAAAGTCC
TGTTTGGAAAACACTTCAGAAGATACAACTGAATAGTGATTCAGTTAACCCAAATTAGAGTACC
AACTTAATGCTCTTCTCAAAGAATGTGAAAATAATTAGAACTGTTAAATTATAATCAAATATCT
ATTTAAAGACATTTATATTAATTTGAAATAACATGTATACAATTAAAAGTGATTTTATTTTA

hide sequence

RefSeq Acc Id:

XR_005241931

Type:

NON-CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666033	76,981,537 - 76,991,641 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_007976152	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000016558.1

RefSeq Acc Id:	XP_007976152 ⟸ XM_007977961
- UniProtKB:	A0A0D9S6R9 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000016558 ⟸ ENSCSAT00000017067

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000001466	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000017067.1	UniProtKB/TrEMBL
InterPro	DUF4580	UniProtKB/TrEMBL
KEGG Report	csab:103224432	UniProtKB/TrEMBL
NCBI Gene	C20H1orf146	ENTREZGENE
PANTHER	PROTEIN SPO16 HOMOLOG	UniProtKB/TrEMBL
	PTHR31408	UniProtKB/TrEMBL
Pfam	DUF4580	UniProtKB/TrEMBL
UniProt	A0A0D9S6R9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2020-12-08	CUNH1orf146	chromosome unknown C1orf146 homolog	C20H1orf146	chromosome 20 open reading frame, human C1orf146	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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