C1orf146 (chromosome 1 open reading frame 146) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: C1orf146 (chromosome 1 open reading frame 146) Homo sapiens
Analyze
Symbol: C1orf146
Name: chromosome 1 open reading frame 146
RGD ID: 1603476
HGNC Page HGNC:24032
Description: Predicted to be involved in reciprocal meiotic recombination and synaptonemal complex assembly. Predicted to be active in chromosome.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC388649; RP11-163M2.4; SCRE; SPO16; synaptonemal complex reinforcing element; uncharacterized protein C1orf146
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38192,217,915 - 92,245,813 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl192,217,915 - 92,245,813 (+)EnsemblGRCh38hg38GRCh38
GRCh37192,683,472 - 92,711,370 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36192,456,161 - 92,483,955 (+)NCBINCBI36Build 36hg18NCBI36
Celera190,929,995 - 90,957,788 (+)NCBICelera
Cytogenetic Map1p22.1NCBI
HuRef190,803,785 - 90,831,573 (+)NCBIHuRef
CHM1_1192,798,338 - 92,826,125 (+)NCBICHM1_1
T2T-CHM13v2.0192,062,827 - 92,090,715 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
benzo[a]pyrene  (EXP)
bisphenol A  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromosome  (IBA,IEA,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15496913   PMID:21873635   PMID:23844656   PMID:30746471   PMID:30949703   PMID:33961781   PMID:37270785  


Genomics

Comparative Map Data
C1orf146
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38192,217,915 - 92,245,813 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl192,217,915 - 92,245,813 (+)EnsemblGRCh38hg38GRCh38
GRCh37192,683,472 - 92,711,370 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36192,456,161 - 92,483,955 (+)NCBINCBI36Build 36hg18NCBI36
Celera190,929,995 - 90,957,788 (+)NCBICelera
Cytogenetic Map1p22.1NCBI
HuRef190,803,785 - 90,831,573 (+)NCBIHuRef
CHM1_1192,798,338 - 92,826,125 (+)NCBICHM1_1
T2T-CHM13v2.0192,062,827 - 92,090,715 (+)NCBIT2T-CHM13v2.0
1700028K03Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395107,682,586 - 107,699,415 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5107,682,575 - 107,699,408 (+)EnsemblGRCm39 Ensembl
GRCm39 Ensembl5107,655,487 - 107,728,462 (+)EnsemblGRCm39 Ensembl
GRCm385107,534,720 - 107,551,549 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5107,507,621 - 107,580,596 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl5107,534,709 - 107,551,542 (+)EnsemblGRCm38mm10GRCm38
MGSCv375107,963,730 - 107,980,561 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365107,775,013 - 107,788,679 (+)NCBIMGSCv36mm8
Celera5104,648,002 - 104,664,837 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map552.23NCBI
C14h1orf146
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8142,375,311 - 2,395,331 (-)NCBIGRCr8
mRatBN7.2142,230,404 - 2,250,420 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl142,231,451 - 2,270,782 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx142,109,328 - 2,152,988 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0143,411,143 - 3,454,799 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0142,108,678 - 2,148,055 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0143,247,640 - 3,288,017 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl143,248,080 - 3,288,017 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0143,251,076 - 3,291,453 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4142,790,182 - 2,829,512 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera142,250,008 - 2,289,344 (-)NCBICelera
Cytogenetic Map14p22NCBI
CUNH1orf146
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554232,233,543 - 2,258,941 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554232,233,445 - 2,251,205 (-)NCBIChiLan1.0ChiLan1.0
C1H1orf146
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21134,778,217 - 134,832,556 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11133,931,195 - 133,984,147 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0194,876,468 - 94,907,783 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1193,618,905 - 93,646,763 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl193,618,905 - 93,646,763 (+)Ensemblpanpan1.1panPan2
C6H1orf146
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1656,665,170 - 56,723,591 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl656,679,039 - 56,723,652 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha659,364,321 - 59,429,209 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0657,042,929 - 57,101,410 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl657,056,957 - 57,076,663 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1656,722,620 - 56,781,046 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0656,701,082 - 56,759,509 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0657,161,694 - 57,220,137 (-)NCBIUU_Cfam_GSD_1.0
CUNH1orf146
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058102,099,320 - 102,119,874 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365376,828,102 - 6,848,695 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365376,828,179 - 6,848,653 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C4H1orf146
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.14124,813,337 - 124,843,305 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CUNH1orf146
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12041,007,096 - 41,030,494 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2041,007,231 - 41,016,109 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603376,981,537 - 76,991,641 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH1orf146
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247425,478,361 - 5,530,606 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in C1orf146
2 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1p22.1(chr1:91811903-92334237)x3 copy number gain See cases [RCV000051524] Chr1:91811903..92334237 [GRCh38]
Chr1:92277460..92799794 [GRCh37]
Chr1:92050048..92572382 [NCBI36]
Chr1:1p22.1		 uncertain significance
GRCh38/hg38 1p31.1-13.3(chr1:72661709-107456880)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051825]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051825]|See cases [RCV000051825] Chr1:72661709..107456880 [GRCh38]
Chr1:73127392..107999502 [GRCh37]
Chr1:72899980..107801025 [NCBI36]
Chr1:1p31.1-13.3		 pathogenic
GRCh38/hg38 1p31.1-21.1(chr1:83457325-104273917)x3 copy number gain See cases [RCV000135654] Chr1:83457325..104273917 [GRCh38]
Chr1:83923008..104816539 [GRCh37]
Chr1:83695596..104618062 [NCBI36]
Chr1:1p31.1-21.1		 pathogenic
GRCh38/hg38 1p22.1(chr1:91626400-92362203)x3 copy number gain See cases [RCV000135598] Chr1:91626400..92362203 [GRCh38]
Chr1:92091957..92827760 [GRCh37]
Chr1:91864545..92600348 [NCBI36]
Chr1:1p22.1		 uncertain significance
GRCh37/hg19 1p36.12-12(chr1:20608823-120546301)x3 copy number loss not provided [RCV000762767] Chr1:20608823..120546301 [GRCh37]
Chr1:1p36.12-12		 likely benign
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p22.1(chr1:92064829-92836061)x3 copy number gain not provided [RCV000684600] Chr1:92064829..92836061 [GRCh37]
Chr1:1p22.1		 uncertain significance
GRCh37/hg19 1p22.2-22.1(chr1:91668330-93539185)x3 copy number gain not provided [RCV000684599] Chr1:91668330..93539185 [GRCh37]
Chr1:1p22.2-22.1		 uncertain significance
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.22-21.1(chr1:103343285-103455144)x3 copy number gain Global developmental delay [RCV000787285] Chr1:103343285..103455144 [GRCh37]
Chr1:1p36.22-21.1		 uncertain significance
GRCh37/hg19 1p22.1(chr1:92405898-94018197)x1 copy number loss Diamond-Blackfan anemia 6 [RCV001263220] Chr1:92405898..94018197 [GRCh37]
Chr1:1p22.1		 pathogenic
GRCh37/hg19 1p22.1(chr1:92626657-93345442) copy number loss not specified [RCV002053491] Chr1:92626657..93345442 [GRCh37]
Chr1:1p22.1		 pathogenic
GRCh37/hg19 1p31.3-22.1(chr1:68180293-92731957) copy number loss not specified [RCV002053392] Chr1:68180293..92731957 [GRCh37]
Chr1:1p31.3-22.1		 pathogenic
GRCh37/hg19 1p22.1(chr1:92157808-92714991)x3 copy number gain not provided [RCV002475831] Chr1:92157808..92714991 [GRCh37]
Chr1:1p22.1		 uncertain significance
NM_001012425.2(C1orf146):c.301T>C (p.Trp101Arg) single nucleotide variant not specified [RCV004102199] Chr1:92244357 [GRCh38]
Chr1:92709914 [GRCh37]
Chr1:1p22.1		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:59
Count of miRNA genes:35
Interacting mature miRNAs:35
Transcripts:ENST00000370373, ENST00000370375
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
AL009497  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37192,711,245 - 92,711,411UniSTSGRCh37
Build 36192,483,833 - 92,483,999RGDNCBI36
Celera190,957,666 - 90,957,832RGD
Cytogenetic Map1p22.1UniSTS
HuRef190,831,451 - 90,831,617UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 62
Low 10 6 39 1 181 1 51 7 501 21 380 57 1 26
Below cutoff 1635 1304 1062 264 836 167 3067 1299 2656 216 684 1112 103 723 1923

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001012425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011541447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047420085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047420086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054336522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054336523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054336524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA861282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL451010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC130499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC171742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ435566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ435801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU567193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU852979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000370373   ⟹   ENSP00000359399
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl192,218,032 - 92,245,715 (+)Ensembl
RefSeq Acc Id: ENST00000370375   ⟹   ENSP00000359401
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl192,217,915 - 92,245,813 (+)Ensembl
RefSeq Acc Id: NM_001012425   ⟹   NP_001012425
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38192,217,915 - 92,245,813 (+)NCBI
GRCh37192,683,573 - 92,711,367 (+)RGD
Build 36192,456,161 - 92,483,955 (+)NCBI Archive
Celera190,929,995 - 90,957,788 (+)RGD
HuRef190,803,785 - 90,831,573 (+)ENTREZGENE
CHM1_1192,798,338 - 92,826,125 (+)NCBI
T2T-CHM13v2.0192,062,827 - 92,090,715 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011541447   ⟹   XP_011539749
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38192,217,915 - 92,245,813 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047420085   ⟹   XP_047276041
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38192,231,400 - 92,245,813 (+)NCBI
RefSeq Acc Id: XM_047420086   ⟹   XP_047276042
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38192,217,915 - 92,245,813 (+)NCBI
RefSeq Acc Id: XM_054336522   ⟹   XP_054192497
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0192,062,827 - 92,090,715 (+)NCBI
RefSeq Acc Id: XM_054336523   ⟹   XP_054192498
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0192,076,311 - 92,090,715 (+)NCBI
RefSeq Acc Id: XM_054336524   ⟹   XP_054192499
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0192,062,827 - 92,090,715 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001012425   ⟸   NM_001012425
- UniProtKB: Q5VVC4 (UniProtKB/Swiss-Prot),   Q5VVC0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011539749   ⟸   XM_011541447
- Peptide Label: isoform X1
- UniProtKB: Q5VVC4 (UniProtKB/Swiss-Prot),   Q5VVC0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000359399   ⟸   ENST00000370373
RefSeq Acc Id: ENSP00000359401   ⟸   ENST00000370375
RefSeq Acc Id: XP_047276042   ⟸   XM_047420086
- Peptide Label: isoform X2
- UniProtKB: X6R7K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047276041   ⟸   XM_047420085
- Peptide Label: isoform X2
- UniProtKB: X6R7K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054192497   ⟸   XM_054336522
- Peptide Label: isoform X1
- UniProtKB: Q5VVC0 (UniProtKB/Swiss-Prot),   Q5VVC4 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054192499   ⟸   XM_054336524
- Peptide Label: isoform X2
- UniProtKB: X6R7K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054192498   ⟸   XM_054336523
- Peptide Label: isoform X2
- UniProtKB: X6R7K4 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5VVC0-F1-model_v2 AlphaFold Q5VVC0 1-180 view protein structure

Promoters
RGD ID:6856210
Promoter ID:EPDNEW_H1270
Type:initiation region
Name:C1orf146_1
Description:chromosome 1 open reading frame 146
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38192,229,147 - 92,229,207EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:24032 AgrOrtholog
COSMIC C1orf146 COSMIC
Ensembl Genes ENSG00000203910 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000370373 ENTREZGENE
  ENST00000370373.2 UniProtKB/TrEMBL
  ENST00000370375 ENTREZGENE
  ENST00000370375.8 UniProtKB/Swiss-Prot
GTEx ENSG00000203910 GTEx
HGNC ID HGNC:24032 ENTREZGENE
Human Proteome Map C1orf146 Human Proteome Map
InterPro DUF4580 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:388649 UniProtKB/Swiss-Prot
NCBI Gene 388649 ENTREZGENE
OMIM 618968 OMIM
PANTHER PROTEIN SPO16 HOMOLOG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR31408 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF4580 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA142672463 PharmGKB
UniProt CA146_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  Q5VVC4 ENTREZGENE
  X6R7K4 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q5VVC4 UniProtKB/Swiss-Prot