RSPH9 (radial spoke head component 9)

Gene: RSPH9 (radial spoke head component 9) Chlorocebus sabaeus

Analyze

Symbol:

RSPH9

Name:

radial spoke head component 9

RGD ID:

18496977

Description:

INVOLVED IN axonemal central apparatus assembly (ortholog); cilium movement (ortholog); radial spoke assembly (ortholog); ASSOCIATED WITH infantile Refsum disease (ortholog); primary ciliary dyskinesia (ortholog); primary ciliary dyskinesia 12 (ortholog); FOUND IN 9+2 motile cilium (ortholog); motile cilium (ortholog); radial spoke (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

LOC103221449; radial spoke head protein 9 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	28,497,793 - 28,520,678 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	28,495,424 - 28,520,518 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	43,697,177 - 43,720,335 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

infantile Refsum disease (ISO)

primary ciliary dyskinesia (ISO)

primary ciliary dyskinesia 12 (ISO)

Zellweger syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axonemal central apparatus assembly (ISO)

axoneme assembly (IEA)

cell projection organization (IEA)

cilium movement (ISO)

cilium movement involved in cell motility (IEA)

motile cilium assembly (IEA)

radial spoke assembly (ISO)

Cellular Component

9+2 motile cilium (ISO)

axoneme (IEA)

cilium (IEA)

cytoplasm (IEA)

cytoskeleton (IEA)

kinocilium (IEA)

motile cilium (ISO)

radial spoke (ISO)

radial spoke head (ISO)

radial spoke head 1 (ISO)

radial spoke head 3 (ISO)

sperm flagellum (ISO)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

RSPH9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	28,497,793 - 28,520,678 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	28,495,424 - 28,520,518 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	43,697,177 - 43,720,335 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

RSPH9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	43,645,036 - 43,672,600 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	43,645,036 - 43,672,600 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	43,612,773 - 43,640,337 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	43,720,788 - 43,746,722 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	43,720,787 - 43,746,722	NCBI
Celera	6	45,164,388 - 45,190,375 (+)	NCBI		Celera
Cytogenetic Map	6	p21.1	NCBI
HuRef	6	43,331,943 - 43,357,789 (+)	NCBI		HuRef
CHM1_1	6	43,615,830 - 43,641,745 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	43,473,769 - 43,501,327 (+)	NCBI		T2T-CHM13v2.0

Rsph9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	46,432,964 - 46,455,171 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	46,432,961 - 46,455,142 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	46,122,038 - 46,144,242 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	46,122,035 - 46,144,216 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	46,266,226 - 46,281,147 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	45,592,858 - 45,607,779 (-)	NCBI		MGSCv36	mm8
Celera	17	49,560,383 - 49,575,628 (-)	NCBI		Celera
Cytogenetic Map	17	C	NCBI
cM Map	17	22.87	NCBI

Rsph9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	22,337,681 - 22,350,515 (+)	NCBI		GRCr8
mRatBN7.2	9	14,840,115 - 14,852,950 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	14,840,115 - 14,860,062 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	23,424,687 - 23,437,370 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	28,487,093 - 28,499,790 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	26,788,115 - 26,800,800 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	17,224,589 - 17,245,093 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	17,225,122 - 17,245,093 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	16,120,436 - 16,140,296 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	10,405,162 - 10,425,818 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	10,402,513 - 10,416,012 (+)	NCBI
Celera	9	12,587,282 - 12,607,082 (+)	NCBI		Celera
Cytogenetic Map	9	q12	NCBI

Rsph9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	9,437,281 - 9,448,514 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955437	9,437,281 - 9,448,514 (+)	NCBI	ChiLan1.0	ChiLan1.0

RSPH9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	58,143,180 - 58,169,180 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	54,012,980 - 54,038,966 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	43,234,531 - 43,261,040 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	44,524,405 - 44,550,574 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	44,524,408 - 44,550,569 (+)	Ensembl	panpan1.1		panPan2

RSPH9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	12,093,016 - 12,105,721 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	12,096,568 - 12,105,721 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	12,119,216 - 12,131,955 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	12,576,751 - 12,589,489 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	12,576,810 - 12,589,490 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	12,101,802 - 12,114,539 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	12,188,811 - 12,201,535 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	12,282,317 - 12,295,061 (+)	NCBI		UU_Cfam_GSD_1.0

Rsph9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	47,591,103 - 47,696,663 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	16,350,450 - 16,369,356 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936476	16,351,794 - 16,369,092 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RSPH9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	38,625,656 - 38,641,408 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	38,624,942 - 38,641,410 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	44,208,277 - 44,223,937 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Rsph9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	16,029,449 - 16,041,775 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	16,020,566 - 16,042,088 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium
Low	36	18	60
Below cutoff		2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007972435	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000010207 ⟹ ENSCSAP00000008303

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	17	28,495,424 - 28,520,518 (-)	Ensembl

RefSeq Acc Id:

XM_007972435 ⟹ XP_007970626

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	17	28,497,793 - 28,520,678 (-)	NCBI
Vero_WHO_p1.0	NW_023666044	43,697,177 - 43,720,335 (+)	NCBI

Sequence:

show sequence

AAATTCTGGAAAGGAAGAGGGAGGGGGCTGATGTTTGCCCAGGCCTCCGTGGGGAGGAGGGCTG
GGCGGTAGGCGGTGGGGTGGGTGGAAACCAGCGTACTGCTAGGCGGAAGGGCGGAGCTTCAGGT
CTCCATGGAGGCAGCTTCTCCTAGCAACTCGACGGGCGTTGAGCAGAGACGCTGGCTTGATGGA
CGCCGACAGCCTCCTGCTGTCTCTGGAGCTGGTGTCCGGCAGTGGGCAGGGCCTCAGCCCGGAC
CGTCGGGCCTCGCTGCTCACGTCTCTTATGCTGGTTAAGCGCGACTACCGCTACGATCGGGTTC
TCTTCTGGGGCCGCATCCTTGGCCTCGTCGCCGATTACTACATCGCGCAGGGCCTGAGTGAGGA
CCAGCTCGCACCGCGCAAGACGCTCTACAGCCTGAACTGCACAGAGTGGAGCCTCTTACCCCCT
GCCACAGAGGAGATGGTGGCACAGTCGTCTGTGGTGAAGGGCCGCTTCATGGGGGACCCATCAT
ACGAATATGAACACACTGAGCTGCAGAAGGTGAATGAAGGTGAAAAGGTCTTTGAAGAAGAAAT
AGTGGTCCAAATCAAGGAAGAGACCCGCTTGGTGTCTGTCATTGACCAGATTGACAAGGCTGTG
GCCATCATCCCCCGAGGCGCCCTCTTCAAGACACCTTTTGGACCCACCCATGTCAATCGGACCT
TTGAAGGACTGTCCTTGTCTGAGGCCAAGAAGCTCAGCTCCTACTTCCATTTCAGGGAGCCTGT
TGAGCTAAAGAATAAGACCTTGCTTGAGAAGGCTGACCTGGACCCCTCCCTGGATTTCATGGAC
TCCTTGGAGCATGACATTCCCAAAGGGTCCTGGAGTATCCAGATGGAGAGAGGCAATGCCCTGG
TGGTGCTGCGCAGCCTGCTCTGGCCAGGCCTCACCTTCTACCATGCTCCCCGCACCAAGCACTA
TGGCTACATCTACGTGGGCACTGGTGAGAAGAACATGGACTTGCCTTTCATGCTATAGAATGGA
AGCCAGCCTGGATTTTTTAAAACAGTCTAAACATGATTTTCTTAAGCTTCAGTGAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_007970626	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000008303
	ENSCSAP00000008303.1

RefSeq Acc Id:	XP_007970626 ⟸ XM_007972435
- UniProtKB:	A0A0D9RI64 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000008303 ⟸ ENSCSAT00000010207

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000012119	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000010207.1	UniProtKB/TrEMBL
KEGG Report	csab:103221449	UniProtKB/TrEMBL
NCBI Gene	LOC103221449	ENTREZGENE
PANTHER	MITOCHONDRIAL RIBOSOMAL PROTEIN S18	UniProtKB/TrEMBL
	RADIAL SPOKE HEAD PROTEIN 9 HOMOLOG	UniProtKB/TrEMBL
UniProt	A0A0D9RI64	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2020-12-08	RSPH9	radial spoke head component 9	LOC103221449	radial spoke head protein 9 homolog	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM