RSPH9 (radial spoke head component 9) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: RSPH9 (radial spoke head component 9) Pan paniscus
Analyze
Symbol: RSPH9
Name: radial spoke head component 9
RGD ID: 11896910
Description: INVOLVED IN axonemal central apparatus assembly (inferred); axoneme assembly (inferred); cell projection organization (inferred); ASSOCIATED WITH infantile Refsum disease (ortholog); primary ciliary dyskinesia (ortholog); primary ciliary dyskinesia 12 (ortholog); FOUND IN 9+2 motile cilium (inferred); axoneme (inferred); cilium (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: radial spoke head 9 homolog; radial spoke head protein 9 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2558,143,180 - 58,169,180 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1654,012,980 - 54,038,966 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0643,234,531 - 43,261,040 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1644,524,405 - 44,550,574 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl644,524,408 - 44,550,569 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RSPH9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2558,143,180 - 58,169,180 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1654,012,980 - 54,038,966 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0643,234,531 - 43,261,040 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1644,524,405 - 44,550,574 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl644,524,408 - 44,550,569 (+)Ensemblpanpan1.1panPan2
RSPH9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38643,645,036 - 43,672,600 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl643,645,036 - 43,672,600 (+)EnsemblGRCh38hg38GRCh38
GRCh37643,612,773 - 43,640,337 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36643,720,788 - 43,746,722 (+)NCBINCBI36Build 36hg18NCBI36
Build 34643,720,787 - 43,746,722NCBI
Celera645,164,388 - 45,190,375 (+)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef643,331,943 - 43,357,789 (+)NCBIHuRef
CHM1_1643,615,830 - 43,641,745 (+)NCBICHM1_1
T2T-CHM13v2.0643,473,769 - 43,501,327 (+)NCBIT2T-CHM13v2.0
Rsph9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391746,432,964 - 46,455,171 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1746,432,961 - 46,455,142 (-)EnsemblGRCm39 Ensembl
GRCm381746,122,038 - 46,144,242 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1746,122,035 - 46,144,216 (-)EnsemblGRCm38mm10GRCm38
MGSCv371746,266,226 - 46,281,147 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361745,592,858 - 45,607,779 (-)NCBIMGSCv36mm8
Celera1749,560,383 - 49,575,628 (-)NCBICelera
Cytogenetic Map17CNCBI
cM Map1722.87NCBI
Rsph9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8922,337,681 - 22,350,515 (+)NCBIGRCr8
mRatBN7.2914,840,115 - 14,852,950 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl914,840,115 - 14,860,062 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx923,424,687 - 23,437,370 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0928,487,093 - 28,499,790 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0926,788,115 - 26,800,800 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0917,224,589 - 17,245,093 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl917,225,122 - 17,245,093 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0916,120,436 - 16,140,296 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4910,405,162 - 10,425,818 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1910,402,513 - 10,416,012 (+)NCBI
Celera912,587,282 - 12,607,082 (+)NCBICelera
Cytogenetic Map9q12NCBI
Rsph9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554379,437,281 - 9,448,514 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554379,437,281 - 9,448,514 (+)NCBIChiLan1.0ChiLan1.0
RSPH9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11212,093,016 - 12,105,721 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1212,096,568 - 12,105,721 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1212,119,216 - 12,131,955 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01212,576,751 - 12,589,489 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1212,576,810 - 12,589,490 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11212,101,802 - 12,114,539 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01212,188,811 - 12,201,535 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01212,282,317 - 12,295,061 (+)NCBIUU_Cfam_GSD_1.0
Rsph9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494647,591,103 - 47,696,663 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647616,350,450 - 16,369,356 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647616,351,794 - 16,369,092 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RSPH9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl738,625,656 - 38,641,408 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1738,624,942 - 38,641,410 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2744,208,277 - 44,223,937 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RSPH9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11728,497,793 - 28,520,678 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1728,495,424 - 28,520,518 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604443,697,177 - 43,720,335 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rsph9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475416,029,449 - 16,041,775 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475416,020,566 - 16,042,088 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000059276   ⟹   ENSPPAP00000036384
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl644,524,408 - 44,550,569 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000059285   ⟹   ENSPPAP00000036393
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl644,524,471 - 44,550,548 (+)Ensembl
RefSeq Acc Id: XM_003833238   ⟹   XP_003833286
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2558,143,181 - 58,169,180 (+)NCBI
NHGRI_mPanPan1654,012,980 - 54,038,966 (+)NCBI
Mhudiblu_PPA_v0643,234,590 - 43,261,040 (+)NCBI
PanPan1.1644,524,405 - 44,550,569 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034962162   ⟹   XP_034818053
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2558,143,180 - 58,169,180 (+)NCBI
NHGRI_mPanPan1654,012,980 - 54,038,966 (+)NCBI
Mhudiblu_PPA_v0643,234,583 - 43,261,040 (+)NCBI
RefSeq Acc Id: XM_034962163   ⟹   XP_034818054
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2558,143,180 - 58,169,180 (+)NCBI
NHGRI_mPanPan1654,012,980 - 54,038,966 (+)NCBI
Mhudiblu_PPA_v0643,234,531 - 43,261,040 (+)NCBI
RefSeq Acc Id: XM_055113642   ⟹   XP_054969617
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2558,143,180 - 58,169,180 (+)NCBI
NHGRI_mPanPan1654,012,980 - 54,038,966 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003833286 (Get FASTA)   NCBI Sequence Viewer  
  XP_034818053 (Get FASTA)   NCBI Sequence Viewer  
  XP_034818054 (Get FASTA)   NCBI Sequence Viewer  
  XP_054969617 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000036384.1
  ENSPPAP00000036393.1
Reference Protein Sequences
RefSeq Acc Id: XP_003833286   ⟸   XM_003833238
- Peptide Label: isoform X2
- UniProtKB: A0A2R9C3P9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034818054   ⟸   XM_034962163
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034818053   ⟸   XM_034962162
- Peptide Label: isoform X1
- UniProtKB: A0A2R9C669 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000036384   ⟸   ENSPPAT00000059276
RefSeq Acc Id: ENSPPAP00000036393   ⟸   ENSPPAT00000059285
RefSeq Acc Id: XP_054969617   ⟸   XM_055113642
- Peptide Label: isoform X4


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000040963 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000059276.1 UniProtKB/TrEMBL
  ENSPPAT00000059285.1 UniProtKB/TrEMBL
KEGG Report pps:100979706 UniProtKB/TrEMBL
NCBI Gene RSPH9 ENTREZGENE
PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN S18 UniProtKB/TrEMBL
  RADIAL SPOKE HEAD PROTEIN 9 HOMOLOG UniProtKB/TrEMBL
UniProt A0A2R9C3P9 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9C669 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-03 RSPH9  radial spoke head component 9  RSPH9  radial spoke head 9 homolog  Symbol and/or name change 5135510 APPROVED