MORC1 (MORC family CW-type zinc finger 1) - Rat Genome Database

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Gene: MORC1 (MORC family CW-type zinc finger 1) Chlorocebus sabaeus
Analyze
Symbol: MORC1
Name: MORC family CW-type zinc finger 1
RGD ID: 18410374
Description: ENCODES a protein that exhibits metal ion binding (inferred); zinc ion binding (inferred); INVOLVED IN behavioral fear response (ortholog); epigenetic programing of male pronucleus (ortholog); epigenetic regulation of gene expression (ortholog); ASSOCIATED WITH megacolon (ortholog); melancholic depression (ortholog); FOUND IN male germ cell nucleus (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: MORC family CW-type zinc finger protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12271,664,183 - 71,828,879 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604194,631,843 - 94,793,589 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MORC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12271,664,183 - 71,828,879 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604194,631,843 - 94,793,589 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
MORC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383108,958,248 - 109,118,134 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3108,958,248 - 109,118,134 (-)EnsemblGRCh38hg38GRCh38
GRCh373108,677,095 - 108,836,981 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363110,159,776 - 110,319,658 (-)NCBINCBI36Build 36hg18NCBI36
Build 343110,159,780 - 110,319,658NCBI
Celera3107,074,840 - 107,234,730 (-)NCBICelera
Cytogenetic Map3q13.13NCBI
HuRef3106,050,639 - 106,210,559 (-)NCBIHuRef
CHM1_13108,640,979 - 108,801,142 (-)NCBICHM1_1
T2T-CHM13v2.03111,678,481 - 111,838,414 (-)NCBIT2T-CHM13v2.0
Morc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391648,251,600 - 48,451,268 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1648,251,600 - 48,451,263 (+)EnsemblGRCm39 Ensembl
GRCm381648,431,237 - 48,630,905 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1648,431,237 - 48,630,900 (+)EnsemblGRCm38mm10GRCm38
MGSCv371648,431,350 - 48,631,018 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361648,350,863 - 48,550,531 (+)NCBIMGSCv36mm8
Celera1648,791,593 - 48,991,779 (+)NCBICelera
Cytogenetic Map16B5NCBI
cM Map1630.75NCBI
Morc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81165,641,786 - 65,847,257 (-)NCBIGRCr8
mRatBN7.21152,178,769 - 52,384,255 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1152,178,769 - 52,384,255 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1160,941,928 - 61,147,394 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01153,603,718 - 53,809,200 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01152,716,585 - 52,938,563 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01154,762,654 - 55,044,581 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1154,762,654 - 55,044,581 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01157,921,428 - 58,071,702 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01158,179,362 - 58,208,671 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41153,424,929 - 53,653,313 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1151,776,017 - 51,985,152 (-)NCBICelera
Cytogenetic Map11q21NCBI
Morc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554279,789,971 - 9,968,613 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554279,790,069 - 9,974,140 (-)NCBIChiLan1.0ChiLan1.0
MORC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22106,943,518 - 107,103,368 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13106,948,297 - 107,108,147 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03106,091,990 - 106,251,790 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13113,021,874 - 113,180,165 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3113,021,874 - 113,180,331 (-)Ensemblpanpan1.1panPan2
MORC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13314,120,370 - 14,302,995 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3314,147,504 - 14,291,024 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3314,225,798 - 14,407,372 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03314,286,395 - 14,470,720 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3314,309,957 - 14,454,632 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13314,155,473 - 14,339,454 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03314,222,690 - 14,406,239 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03314,634,171 - 14,816,395 (-)NCBIUU_Cfam_GSD_1.0
Morc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602140,135,935 - 140,285,971 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366452,560,397 - 2,707,661 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366452,570,071 - 2,725,796 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MORC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13150,268,234 - 150,560,867 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113150,387,942 - 150,561,808 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213159,468,092 - 159,609,868 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Morc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473139,984,649 - 40,191,042 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473140,014,713 - 40,191,395 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 20 12 6
Below cutoff 4 5 21

Sequence


Reference Sequences
RefSeq Acc Id: XM_038002617   ⟹   XP_037858545
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604194,631,843 - 94,793,589 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037858545 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000002703.1
Reference Protein Sequences
RefSeq Acc Id: XP_037858545   ⟸   XM_038002617
- UniProtKB: A0A0D9R264 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000006431 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000004449.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.100 UniProtKB/TrEMBL
  3.30.565.10 UniProtKB/TrEMBL
InterPro HATPase_C_sf UniProtKB/TrEMBL
  Morc_S5 UniProtKB/TrEMBL
  Znf_CW UniProtKB/TrEMBL
NCBI Gene MORC1 ENTREZGENE
PANTHER MORC FAMILY CW-TYPE ZINC FINGER PROTEIN 1 UniProtKB/TrEMBL
  ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 1 UniProtKB/TrEMBL
Pfam HATPase_c_3 UniProtKB/TrEMBL
  Morc6_S5 UniProtKB/TrEMBL
  zf-CW UniProtKB/TrEMBL
PROSITE ZF_CW UniProtKB/TrEMBL
Superfamily-SCOP SSF55874 UniProtKB/TrEMBL
UniProt A0A0D9R264 ENTREZGENE, UniProtKB/TrEMBL