RPL26 (ribosomal protein L26) - Rat Genome Database

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Gene: RPL26 (ribosomal protein L26) Chlorocebus sabaeus
Analyze
Symbol: RPL26
Name: ribosomal protein L26
RGD ID: 18407241
Description: ENCODES a protein that exhibits mRNA 5'-UTR binding (inferred); RNA binding (inferred); structural constituent of ribosome (inferred); INVOLVED IN response to amino acid starvation (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH congenital hypoplastic anemia (ortholog); Diamond-Blackfan anemia (ortholog); Diamond-Blackfan anemia 11 (ortholog); FOUND IN cytosolic large ribosomal subunit (ortholog); cytosolic ribosome (ortholog); synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L26
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1167,733,652 - 7,740,384 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl167,732,921 - 7,740,325 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605913,656,977 - 13,663,801 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RPL26
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1167,733,652 - 7,740,384 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl167,732,921 - 7,740,325 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605913,656,977 - 13,663,801 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
RPL26
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38178,377,516 - 8,383,193 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl178,377,516 - 8,383,213 (-)EnsemblGRCh38hg38GRCh38
GRCh37178,280,834 - 8,286,511 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36178,221,559 - 8,227,290 (-)NCBINCBI36Build 36hg18NCBI36
Build 34178,221,564 - 8,227,234NCBI
Celera178,311,586 - 8,317,314 (-)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef178,175,458 - 8,181,187 (-)NCBIHuRef
CHM1_1178,289,725 - 8,295,454 (-)NCBICHM1_1
T2T-CHM13v2.0178,283,737 - 8,289,839 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27142,647,142 - 142,647,658 (-)NCBI
Rpl26
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391168,792,392 - 68,795,360 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1168,792,409 - 68,797,815 (+)EnsemblGRCm39 Ensembl
GRCm381168,901,566 - 68,904,534 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1168,901,583 - 68,906,989 (+)EnsemblGRCm38mm10GRCm38
MGSCv371168,715,068 - 68,718,036 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3653,242,396 - 3,242,934 (+)NCBIMGSCv36mm8
Celera1175,851,533 - 75,854,505 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.17NCBI
Rpl26
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81054,109,692 - 54,112,822 (+)NCBIGRCr8
mRatBN7.21053,610,836 - 53,613,966 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1053,610,421 - 53,613,966 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx677,161,785 - 77,162,308 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0677,461,108 - 77,461,631 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01053,269,862 - 53,272,989 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01055,492,417 - 55,495,547 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1055,492,404 - 55,496,012 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01055,234,665 - 55,238,391 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41055,662,220 - 55,665,752 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11055,675,648 - 55,678,904 (+)NCBI
Celera1052,777,155 - 52,780,285 (+)NCBICelera
Cytogenetic Map10q24NCBI
Rpl26
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554678,519,760 - 8,527,182 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554678,519,760 - 8,525,514 (+)NCBIChiLan1.0ChiLan1.0
RPL26
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21965,370,286 - 65,377,332 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11770,180,689 - 70,186,795 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01743,274,839 - 43,282,606 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11748,008,951 - 48,015,977 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1748,009,198 - 48,015,977 (+)Ensemblpanpan1.1panPan2
RPL26
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1533,152,114 - 33,158,237 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl533,152,113 - 33,158,302 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha533,287,982 - 33,294,136 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0533,255,271 - 33,261,512 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl533,255,271 - 33,261,468 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1533,222,399 - 33,228,549 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0533,177,657 - 33,183,810 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0533,357,730 - 33,363,882 (-)NCBIUU_Cfam_GSD_1.0
Rpl26
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560248,129,729 - 48,134,886 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365951,603,413 - 1,609,132 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365951,603,913 - 1,609,125 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL26
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1253,548,321 - 53,553,455 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11253,548,313 - 53,553,453 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21256,024,039 - 56,029,520 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Rpl26
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478610,946,302 - 10,953,564 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478610,948,624 - 10,953,381 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 20 60
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000008533   ⟹   ENSCSAP00000006676
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl167,732,921 - 7,740,325 (-)Ensembl
RefSeq Acc Id: XM_008010296   ⟹   XP_008008487
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1167,733,652 - 7,740,384 (-)NCBI
Vero_WHO_p1.0NW_02366605913,656,977 - 13,663,801 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037987330   ⟹   XP_037843258
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605913,657,103 - 13,663,801 (+)NCBI
Protein Sequences
Protein RefSeqs XP_008008487 (Get FASTA)   NCBI Sequence Viewer  
  XP_037843258 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000005812.1
  ENSCSAP00000006676
  ENSCSAP00000006676.1
Reference Protein Sequences
RefSeq Acc Id: XP_008008487   ⟸   XM_008010296
- UniProtKB: A0A0D9RDI7 (UniProtKB/TrEMBL),   A0A0D9RB23 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000006676   ⟸   ENSCSAT00000008533
RefSeq Acc Id: XP_037843258   ⟸   XM_037987330
- UniProtKB: A0A0D9RDI7 (UniProtKB/TrEMBL),   A0A0D9RB23 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000009551 UniProtKB/TrEMBL
  ENSCSAG00000010445 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000007635.1 UniProtKB/TrEMBL
  ENSCSAT00000008533.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.30 UniProtKB/TrEMBL
InterPro KOW UniProtKB/TrEMBL
  KOW_RPL26/RPL24 UniProtKB/TrEMBL
  Rib_L2_dom2 UniProtKB/TrEMBL
  Ribosomal_L24/26_CS UniProtKB/TrEMBL
  Ribosomal_L26/L24P_euk/arc UniProtKB/TrEMBL
  Translation_prot_SH3-like_sf UniProtKB/TrEMBL
KEGG Report csab:103242359 UniProtKB/TrEMBL
NCBI Gene RPL26 ENTREZGENE
PANTHER KOW DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  PTHR11143 UniProtKB/TrEMBL
Pfam KOW UniProtKB/TrEMBL
  Ribosomal_L26 UniProtKB/TrEMBL
PROSITE RIBOSOMAL_L24 UniProtKB/TrEMBL
SMART KOW UniProtKB/TrEMBL
Superfamily-SCOP SSF50104 UniProtKB/TrEMBL
UniProt A0A0D9RB23 ENTREZGENE, UniProtKB/TrEMBL
  A0A0D9RDI7 ENTREZGENE, UniProtKB/TrEMBL