NT5C1B (5'-nucleotidase, cytosolic IB) - Rat Genome Database

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Gene: NT5C1B (5'-nucleotidase, cytosolic IB) Chlorocebus sabaeus
Analyze
Symbol: NT5C1B
Name: 5'-nucleotidase, cytosolic IB
RGD ID: 18352414
Description: ENCODES a protein that exhibits 5'-nucleotidase activity (ortholog); INVOLVED IN adenosine metabolic process (ortholog); allantoin metabolic process (ortholog); amide catabolic process (ortholog); FOUND IN cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cytosolic 5'-nucleotidase 1B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11489,094,340 - 89,126,631 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1489,099,988 - 89,125,772 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604523,105,233 - 23,129,245 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA,ISO)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
NT5C1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11489,094,340 - 89,126,631 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1489,099,988 - 89,125,772 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604523,105,233 - 23,129,245 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
NT5C1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38218,562,871 - 18,589,569 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl218,562,871 - 18,589,572 (-)EnsemblGRCh38hg38GRCh38
GRCh37218,744,137 - 18,770,835 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36218,607,618 - 18,634,319 (-)NCBINCBI36Build 36hg18NCBI36
Build 34218,665,764 - 18,692,466NCBI
Celera218,625,400 - 18,652,107 (-)NCBICelera
Cytogenetic Map2p24.2NCBI
HuRef218,519,305 - 18,546,012 (-)NCBIHuRef
CHM1_1218,673,544 - 18,700,251 (-)NCBICHM1_1
T2T-CHM13v2.0218,594,985 - 18,621,687 (-)NCBIT2T-CHM13v2.0
Nt5c1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391210,419,971 - 10,440,174 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1210,419,973 - 10,440,175 (+)EnsemblGRCm39 Ensembl
GRCm381210,369,971 - 10,390,174 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1210,369,973 - 10,390,175 (+)EnsemblGRCm38mm10GRCm38
MGSCv371210,376,777 - 10,396,980 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361210,396,052 - 10,416,178 (+)NCBIMGSCv36mm8
Celera1210,746,216 - 10,766,635 (+)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map125.27NCBI
Nt5c1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8638,858,182 - 38,875,610 (+)NCBIGRCr8
mRatBN7.2633,139,053 - 33,156,489 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl633,139,064 - 33,156,481 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx633,432,019 - 33,449,372 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0633,747,932 - 33,765,285 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0633,219,683 - 33,237,065 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0636,089,450 - 36,106,843 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl636,089,433 - 36,106,849 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0645,851,446 - 45,868,643 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4633,849,953 - 33,867,624 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1633,852,905 - 33,870,576 (+)NCBI
Celera632,575,945 - 32,593,530 (+)NCBICelera
Cytogenetic Map6q14NCBI
Nt5c1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554691,288,137 - 1,300,757 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554691,287,455 - 1,300,716 (-)NCBIChiLan1.0ChiLan1.0
NT5C1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212107,940,542 - 107,968,557 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A107,944,513 - 107,972,439 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A18,542,502 - 18,569,114 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A18,669,699 - 18,696,299 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A18,669,699 - 18,696,299 (-)Ensemblpanpan1.1panPan2
NT5C1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11713,848,736 - 13,870,933 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1713,800,670 - 13,822,708 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01713,992,351 - 14,014,391 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1713,995,028 - 14,014,318 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11713,848,730 - 13,870,947 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01713,854,259 - 13,876,305 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01713,888,026 - 13,910,243 (-)NCBIUU_Cfam_GSD_1.0
Nt5c1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629258,300,043 - 58,319,202 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649312,520,480 - 12,538,888 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649312,520,480 - 12,547,394 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
Nt5c1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247381,399,550 - 1,410,684 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247381,398,694 - 1,410,699 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 2 15 2
Below cutoff 22 3 56

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000006022   ⟹   ENSCSAP00000004236
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1489,099,988 - 89,125,772 (+)Ensembl
RefSeq Acc Id: XM_007971383   ⟹   XP_007969574
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11489,098,251 - 89,126,631 (+)NCBI
Vero_WHO_p1.0NW_02366604523,105,233 - 23,129,245 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007969574 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000004236.1
Reference Protein Sequences
RefSeq Acc Id: XP_007969574   ⟸   XM_007971383
- UniProtKB: A0A0D9R6J7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000004236   ⟸   ENSCSAT00000006022


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000007999 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000006022.1 UniProtKB/TrEMBL
InterPro 5-nucleotidase UniProtKB/TrEMBL
NCBI Gene NT5C1B ENTREZGENE
PANTHER CYTOSOLIC 5'-NUCLEOTIDASE 1B UniProtKB/TrEMBL
  PTHR31367 UniProtKB/TrEMBL
Pfam 5-nucleotidase UniProtKB/TrEMBL
UniProt A0A0D9R6J7 ENTREZGENE, UniProtKB/TrEMBL