NT5C1B (5'-nucleotidase, cytosolic IB) - Rat Genome Database

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Gene: NT5C1B (5'-nucleotidase, cytosolic IB) Canis lupus familiaris
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Symbol: NT5C1B
Name: 5'-nucleotidase, cytosolic IB
RGD ID: 12359249
Description: ENCODES a protein that exhibits 5'-nucleotidase activity (ortholog); INVOLVED IN adenosine metabolic process (ortholog); allantoin metabolic process (ortholog); amide catabolic process (ortholog); FOUND IN cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cytosolic 5'-nucleotidase 1B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11713,848,736 - 13,870,933 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1713,800,670 - 13,822,708 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01713,992,351 - 14,014,391 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1713,995,028 - 14,014,318 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11713,848,730 - 13,870,947 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01713,854,259 - 13,876,305 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01713,888,026 - 13,910,243 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA,ISO)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
NT5C1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11713,848,736 - 13,870,933 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1713,800,670 - 13,822,708 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01713,992,351 - 14,014,391 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1713,995,028 - 14,014,318 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11713,848,730 - 13,870,947 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01713,854,259 - 13,876,305 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01713,888,026 - 13,910,243 (-)NCBIUU_Cfam_GSD_1.0
NT5C1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38218,562,871 - 18,589,569 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl218,562,871 - 18,589,572 (-)EnsemblGRCh38hg38GRCh38
GRCh37218,744,137 - 18,770,835 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36218,607,618 - 18,634,319 (-)NCBINCBI36Build 36hg18NCBI36
Build 34218,665,764 - 18,692,466NCBI
Celera218,625,400 - 18,652,107 (-)NCBICelera
Cytogenetic Map2p24.2NCBI
HuRef218,519,305 - 18,546,012 (-)NCBIHuRef
CHM1_1218,673,544 - 18,700,251 (-)NCBICHM1_1
T2T-CHM13v2.0218,594,985 - 18,621,687 (-)NCBIT2T-CHM13v2.0
Nt5c1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391210,419,971 - 10,440,174 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1210,419,973 - 10,440,175 (+)EnsemblGRCm39 Ensembl
GRCm381210,369,971 - 10,390,174 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1210,369,973 - 10,390,175 (+)EnsemblGRCm38mm10GRCm38
MGSCv371210,376,777 - 10,396,980 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361210,396,052 - 10,416,178 (+)NCBIMGSCv36mm8
Celera1210,746,216 - 10,766,635 (+)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map125.27NCBI
Nt5c1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8638,858,182 - 38,875,610 (+)NCBIGRCr8
mRatBN7.2633,139,053 - 33,156,489 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl633,139,064 - 33,156,481 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx633,432,019 - 33,449,372 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0633,747,932 - 33,765,285 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0633,219,683 - 33,237,065 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0636,089,450 - 36,106,843 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl636,089,433 - 36,106,849 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0645,851,446 - 45,868,643 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4633,849,953 - 33,867,624 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1633,852,905 - 33,870,576 (+)NCBI
Celera632,575,945 - 32,593,530 (+)NCBICelera
Cytogenetic Map6q14NCBI
Nt5c1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554691,288,137 - 1,300,757 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554691,287,455 - 1,300,716 (-)NCBIChiLan1.0ChiLan1.0
NT5C1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212107,940,542 - 107,968,557 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A107,944,513 - 107,972,439 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A18,542,502 - 18,569,114 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A18,669,699 - 18,696,299 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A18,669,699 - 18,696,299 (-)Ensemblpanpan1.1panPan2
Nt5c1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629258,300,043 - 58,319,202 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649312,520,480 - 12,538,888 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649312,520,480 - 12,547,394 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NT5C1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11489,094,340 - 89,126,631 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1489,099,988 - 89,125,772 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604523,105,233 - 23,129,245 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nt5c1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247381,399,550 - 1,410,684 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247381,398,694 - 1,410,699 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NT5C1B
241 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 1 3 7 8 1 1
Low 5 4 19 6 6 6 6 6 5 9 5
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003639573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005630156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014120513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022404475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022404476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038498282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038498283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038498284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038498285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038560838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038560839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038560840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038560842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038624862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038624863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038624864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038624865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038690774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038690775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038690776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038690777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00845030841   ⟹   ENSCAFP00845024176
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1713,995,028 - 14,014,318 (-)Ensembl
RefSeq Acc Id: XM_003639573   ⟹   XP_003639621
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11713,851,569 - 13,870,933 (-)NCBI
Dog10K_Boxer_Tasha1713,803,393 - 13,822,708 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014120513   ⟹   XP_013975988
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11713,851,569 - 13,870,900 (-)NCBI
Dog10K_Boxer_Tasha1713,803,393 - 13,822,675 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022404475   ⟹   XP_022260183
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11713,851,059 - 13,870,810 (-)NCBI
Dog10K_Boxer_Tasha1713,802,613 - 13,822,585 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022404476   ⟹   XP_022260184
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11713,848,736 - 13,870,933 (-)NCBI
Dog10K_Boxer_Tasha1713,800,670 - 13,822,708 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038498282   ⟹   XP_038354210
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11713,850,673 - 13,870,824 (-)NCBI
RefSeq Acc Id: XM_038498283   ⟹   XP_038354211
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11713,851,453 - 13,870,914 (-)NCBI
RefSeq Acc Id: XM_038498284   ⟹   XP_038354212
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11713,851,453 - 13,870,947 (-)NCBI
RefSeq Acc Id: XM_038498285   ⟹   XP_038354213
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11713,848,730 - 13,870,947 (-)NCBI
RefSeq Acc Id: XM_038560838   ⟹   XP_038416766
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01713,889,969 - 13,910,120 (-)NCBI
RefSeq Acc Id: XM_038560839   ⟹   XP_038416767
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01713,890,749 - 13,910,210 (-)NCBI
RefSeq Acc Id: XM_038560840   ⟹   XP_038416768
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01713,890,749 - 13,910,243 (-)NCBI
RefSeq Acc Id: XM_038560842   ⟹   XP_038416770
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01713,888,026 - 13,910,243 (-)NCBI
RefSeq Acc Id: XM_038624862   ⟹   XP_038480790
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01713,856,204 - 13,876,182 (-)NCBI
RefSeq Acc Id: XM_038624863   ⟹   XP_038480791
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01713,856,984 - 13,876,272 (-)NCBI
RefSeq Acc Id: XM_038624864   ⟹   XP_038480792
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01713,856,984 - 13,876,305 (-)NCBI
RefSeq Acc Id: XM_038624865   ⟹   XP_038480793
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01713,854,259 - 13,876,305 (-)NCBI
RefSeq Acc Id: XM_038690774   ⟹   XP_038546702
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01713,994,295 - 14,014,268 (-)NCBI
RefSeq Acc Id: XM_038690775   ⟹   XP_038546703
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01713,995,075 - 14,014,358 (-)NCBI
RefSeq Acc Id: XM_038690776   ⟹   XP_038546704
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01713,995,075 - 14,014,391 (-)NCBI
RefSeq Acc Id: XM_038690777   ⟹   XP_038546705
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01713,992,351 - 14,014,391 (-)NCBI
RefSeq Acc Id: XP_013975988   ⟸   XM_014120513
- Peptide Label: isoform X2
- UniProtKB: J9P4K5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003639621   ⟸   XM_003639573
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_022260184   ⟸   XM_022404476
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_022260183   ⟸   XM_022404475
- Peptide Label: isoform X1
- UniProtKB: A0A8C0NCK5 (UniProtKB/TrEMBL),   A0A8I3P2D2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038354213   ⟸   XM_038498285
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038354210   ⟸   XM_038498282
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038354212   ⟸   XM_038498284
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038354211   ⟸   XM_038498283
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038480793   ⟸   XM_038624865
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038480790   ⟸   XM_038624862
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038480792   ⟸   XM_038624864
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038480791   ⟸   XM_038624863
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038546705   ⟸   XM_038690777
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038546702   ⟸   XM_038690774
- Peptide Label: isoform X1
- UniProtKB: A0A8C0NCK5 (UniProtKB/TrEMBL),   A0A8I3P2D2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038546704   ⟸   XM_038690776
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038546703   ⟸   XM_038690775
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038416770   ⟸   XM_038560842
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038416766   ⟸   XM_038560838
- Peptide Label: isoform X1
- UniProtKB: A0A8C0SEW2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038416768   ⟸   XM_038560840
- Peptide Label: isoform X3
- UniProtKB: A0A8C0LQD8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038416767   ⟸   XM_038560839
- Peptide Label: isoform X2
RefSeq Acc Id: ENSCAFP00845024176   ⟸   ENSCAFT00845030841


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000003760 UniProtKB/TrEMBL
  ENSCAFG00030013976 UniProtKB/TrEMBL
  ENSCAFG00040012187 UniProtKB/TrEMBL
  ENSCAFG00845017369 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000006066.5 UniProtKB/TrEMBL
  ENSCAFT00030026014.1 UniProtKB/TrEMBL
  ENSCAFT00030026115.1 UniProtKB/TrEMBL
  ENSCAFT00030026202.1 UniProtKB/TrEMBL
  ENSCAFT00030026272.1 UniProtKB/TrEMBL
  ENSCAFT00040022668.1 UniProtKB/TrEMBL
  ENSCAFT00040022757.1 UniProtKB/TrEMBL
  ENSCAFT00040022826.1 UniProtKB/TrEMBL
  ENSCAFT00040022903.1 UniProtKB/TrEMBL
  ENSCAFT00845030841 ENTREZGENE
  ENSCAFT00845030841.1 UniProtKB/TrEMBL
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
InterPro 5-nucleotidase UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
  SDR_fam UniProtKB/TrEMBL
NCBI Gene NT5C1B ENTREZGENE
PANTHER CYTOSOLIC 5'-NUCLEOTIDASE 1B UniProtKB/TrEMBL
  PTHR31367 UniProtKB/TrEMBL
Pfam 5-nucleotidase UniProtKB/TrEMBL
  adh_short UniProtKB/TrEMBL
PRINTS GDHRDH UniProtKB/TrEMBL
  SDRFAMILY UniProtKB/TrEMBL
Superfamily-SCOP SSF51735 UniProtKB/TrEMBL
UniProt A0A8C0LQD8 ENTREZGENE
  A0A8C0N7U9_CANLF UniProtKB/TrEMBL
  A0A8C0NCB3_CANLF UniProtKB/TrEMBL
  A0A8C0NCK5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0NI85_CANLF UniProtKB/TrEMBL
  A0A8C0SDT2_CANLF UniProtKB/TrEMBL
  A0A8C0SEW2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0YWP1_CANLF UniProtKB/TrEMBL
  A0A8C0YWS3_CANLF UniProtKB/TrEMBL
  A0A8I3P2D2 ENTREZGENE, UniProtKB/TrEMBL
  J9P4K5 ENTREZGENE
VGNC ID VGNC:110588 ENTREZGENE