PEMT (phosphatidylethanolamine N-methyltransferase) - Rat Genome Database

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Gene: PEMT (phosphatidylethanolamine N-methyltransferase) Chlorocebus sabaeus
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Symbol: PEMT
Name: phosphatidylethanolamine N-methyltransferase
RGD ID: 18342225
Description: ENCODES a protein that exhibits phosphatidylethanolamine binding (ortholog); phosphatidylethanolamine N-methyltransferase activity (ortholog); S-adenosylmethionine-dependent methyltransferase activity (ortholog); INVOLVED IN blastocyst hatching (ortholog); glycerophospholipid metabolic process (ortholog); negative regulation of cell population proliferation (ortholog); PARTICIPATES IN choline metabolic pathway; glycerophospholipid metabolic pathway; homocysteine metabolic pathway; ASSOCIATED WITH Alcoholic Fatty Liver (ortholog); autistic disorder (ortholog); Birt-Hogg-Dube syndrome (ortholog); FOUND IN brush border membrane (ortholog); sarcolemma (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11616,540,096 - 16,626,251 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1616,539,985 - 16,611,279 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660594,287,408 - 4,373,208 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PEMT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11616,540,096 - 16,626,251 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1616,539,985 - 16,611,279 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660594,287,408 - 4,373,208 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
PEMT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381717,505,563 - 17,592,142 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1717,505,563 - 17,591,708 (-)EnsemblGRCh38hg38GRCh38
GRCh371717,408,877 - 17,495,022 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361717,349,602 - 17,435,719 (-)NCBINCBI36Build 36hg18NCBI36
Build 341717,349,603 - 17,421,504NCBI
Celera1718,348,298 - 18,434,406 (-)NCBICelera
Cytogenetic Map17p11.2NCBI
HuRef1717,161,232 - 17,247,817 (-)NCBIHuRef
CHM1_11717,417,546 - 17,503,772 (-)NCBICHM1_1
T2T-CHM13v2.01717,452,171 - 17,538,580 (-)NCBIT2T-CHM13v2.0
Pemt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391159,861,440 - 59,937,394 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1159,861,440 - 59,937,315 (-)EnsemblGRCm39 Ensembl
GRCm381159,970,614 - 60,046,561 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1159,970,614 - 60,046,489 (-)EnsemblGRCm38mm10GRCm38
MGSCv371159,784,119 - 59,850,341 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361159,786,812 - 59,853,034 (-)NCBIMGSCv36mm8
MGSCv361160,507,197 - 60,573,128 (-)NCBIMGSCv36mm8
Cytogenetic Map11B1.3NCBI
cM Map1137.81NCBI
Pemt
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81045,275,434 - 45,349,651 (-)NCBIGRCr8
mRatBN7.21044,775,910 - 44,849,990 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1044,775,911 - 44,850,013 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1049,476,153 - 49,542,510 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01048,966,515 - 49,032,872 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01044,470,127 - 44,536,484 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01046,339,821 - 46,404,640 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1046,339,821 - 46,404,642 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01046,096,652 - 46,161,545 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.11046,313,743 - 46,316,512 (-)NCBI
Celera1044,035,617 - 44,101,504 (-)NCBICelera
Cytogenetic Map10q22NCBI
Pemt
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955577367,288 - 443,138 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955577365,031 - 443,138 (+)NCBIChiLan1.0ChiLan1.0
PEMT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21952,021,447 - 52,112,143 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11756,733,691 - 56,819,906 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01733,703,800 - 33,790,470 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11738,651,026 - 38,737,202 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1738,651,024 - 38,737,202 (+)Ensemblpanpan1.1panPan2
PEMT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1541,871,685 - 41,960,831 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl541,872,108 - 41,960,828 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha542,009,850 - 42,098,909 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0541,977,629 - 42,066,973 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl541,977,968 - 42,066,970 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1541,944,901 - 42,034,078 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0541,892,196 - 41,981,419 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0542,084,267 - 42,173,368 (+)NCBIUU_Cfam_GSD_1.0
Pemt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560261,659,756 - 61,735,456 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367411,128,616 - 1,207,499 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367411,131,792 - 1,207,460 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PEMT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11260,880,367 - 60,919,279 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21263,139,567 - 63,158,686 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pemt
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248493,817,915 - 3,908,888 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248493,818,115 - 3,907,250 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 11 20
Low 25 17 40
Below cutoff 3

Sequence


RefSeq Acc Id: ENSCSAT00000006484   ⟹   ENSCSAP00000004688
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1616,539,985 - 16,611,279 (-)Ensembl
RefSeq Acc Id: XM_008010531   ⟹   XP_008008722
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11616,540,096 - 16,626,250 (-)NCBI
Vero_WHO_p1.0NW_0236660594,287,417 - 4,373,208 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008010532   ⟹   XP_008008723
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11616,540,096 - 16,626,128 (-)NCBI
Vero_WHO_p1.0NW_0236660594,287,485 - 4,373,208 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008010535   ⟹   XP_008008726
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11616,540,763 - 16,626,251 (-)NCBI
Vero_WHO_p1.0NW_0236660594,287,408 - 4,372,548 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037987272   ⟹   XP_037843200
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660594,298,355 - 4,373,208 (+)NCBI
Protein Sequences
Protein RefSeqs XP_008008722 (Get FASTA)   NCBI Sequence Viewer  
  XP_008008723 (Get FASTA)   NCBI Sequence Viewer  
  XP_008008726 (Get FASTA)   NCBI Sequence Viewer  
  XP_037843200 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000004688
  ENSCSAP00000004688.1
RefSeq Acc Id: XP_008008722   ⟸   XM_008010531
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R7U9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008008723   ⟸   XM_008010532
- Peptide Label: isoform X2
- UniProtKB: A0A0D9R7U9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008008726   ⟸   XM_008010535
- Peptide Label: isoform X3
RefSeq Acc Id: ENSCSAP00000004688   ⟸   ENSCSAT00000006484
RefSeq Acc Id: XP_037843200   ⟸   XM_037987272
- Peptide Label: isoform X2
- UniProtKB: A0A0D9R7U9 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000008429 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000006484.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.1630 UniProtKB/TrEMBL
InterPro PEMT/MFAP UniProtKB/TrEMBL
  Phopholipid_MeTrfase UniProtKB/TrEMBL
NCBI Gene PEMT ENTREZGENE
PANTHER PHOSPHATIDYLETHANOLAMINE N-METHYLTRANSFERASE UniProtKB/TrEMBL
  PTHR15458 UniProtKB/TrEMBL
Pfam PEMT UniProtKB/TrEMBL
PIRSF PEMT UniProtKB/TrEMBL
PROSITE SAM_PEMT_PEM2 UniProtKB/TrEMBL
UniProt A0A0D9R7U9 ENTREZGENE, UniProtKB/TrEMBL