U2 (U2 spliceosomal RNA) - Rat Genome Database

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Gene: U2 (U2 spliceosomal RNA) Homo sapiens
Analyze
Symbol: U2
Name: U2 spliceosomal RNA
RGD ID: 16566947
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: MODEL
Previously known as: AC241952.1
RGD Orthologs
Mouse
Rat
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381120,571,120 - 120,571,264 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1120,571,120 - 120,571,264 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic Map1p11.2NCBI
T2T-CHM13v2.01120,584,362 - 120,584,506 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
U2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381120,571,120 - 120,571,264 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1120,571,120 - 120,571,264 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic Map1p11.2NCBI
T2T-CHM13v2.01120,584,362 - 120,584,506 (+)NCBIT2T-CHM13v2.0
Gm23661
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39570,076,438 - 70,076,529 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl570,076,438 - 70,076,524 (+)EnsemblGRCm39 Ensembl
GRCm38569,919,095 - 69,919,186 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl569,919,095 - 69,919,181 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map5C3.1NCBI
LOC120095486
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81035,932,580 - 35,932,792 (-)NCBIGRCr8
mRatBN7.21035,431,590 - 35,431,802 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1035,431,590 - 35,431,802 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map10q22NCBI
LOC119865441
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha138,352,616 - 8,352,738 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0138,672,682 - 8,672,804 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl138,672,682 - 8,672,804 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1138,428,884 - 8,429,006 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0138,547,217 - 8,547,339 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0138,624,221 - 8,624,343 (+)NCBIUU_Cfam_GSD_1.0


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 3 2 1
Low 436 1036 358 63 61 46 1367 428 1450 30 222 362 20 334 1005 2
Below cutoff 612 512 357 147 141 98 1116 685 1039 44 267 346 49 348 728 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000618978
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1120,571,120 - 120,571,264 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC U2 COSMIC
Ensembl Genes ENSG00000273694 Ensembl, ENTREZGENE
GTEx ENSG00000273694 GTEx
Human Proteome Map U2 Human Proteome Map
NCBI Gene LOC124904641 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-20 U2  U2 spliceosomal RNA  AC241952.1    Symbol and/or name change 19259462 PROVISIONAL
2020-02-07 AC241952.1    U2  U2 spliceosomal RNA  Symbol and/or name change 19259462 PROVISIONAL