Gm23661 (predicted gene, 23661) - Rat Genome Database

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Gene: Gm23661 (predicted gene, 23661) Mus musculus
Analyze
Symbol: Gm23661
Name: predicted gene, 23661
RGD ID: 15002631
MGI Page MGI
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39570,076,438 - 70,076,529 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl570,076,438 - 70,076,524 (+)EnsemblGRCm39 Ensembl
GRCm38569,919,095 - 69,919,186 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl569,919,095 - 69,919,181 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map5C3.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm23661
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39570,076,438 - 70,076,529 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl570,076,438 - 70,076,524 (+)EnsemblGRCm39 Ensembl
GRCm38569,919,095 - 69,919,186 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl569,919,095 - 69,919,181 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map5C3.1NCBI
U2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381120,571,120 - 120,571,264 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1120,571,120 - 120,571,264 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic Map1p11.2NCBI
T2T-CHM13v2.01120,584,362 - 120,584,506 (+)NCBIT2T-CHM13v2.0
LOC120095486
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81035,932,580 - 35,932,792 (-)NCBIGRCr8
mRatBN7.21035,431,590 - 35,431,802 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1035,431,590 - 35,431,802 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map10q22NCBI

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:101
Count of miRNA genes:86
Interacting mature miRNAs:91
Transcripts:ENSMUST00000122630
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined32133234100777931Mouse
4141647Hrvhf1_mheart rate variability, high frequency 1 (mouse)Not determined3643342370433423Mouse
1301170Lith13_mlithogenic gene 13 (mouse)Not determined53649448670494598Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
13464246Ahl11_mage related hearing loss, early onset 11 (mouse)53764377771643896Mouse
1300951Gbvq1_mgallstone bladder volume QTL 1 (mouse)Not determined53811168172111798Mouse
13464245Ahl12_mage related hearing loss, early onset 12 (mouse)53811168172111798Mouse
1301698Pcfm4_mperiosteal circumference and femur length 4 (mouse)Not determined54458584378585965Mouse
13207584Mwmlpt4_mMorris water maze latency to platform, training, 4 (mouse)54632260680322606Mouse
13207588Mwmlpa4_mMorris water maze latency to platform, all, 4 (mouse)54632260680322606Mouse
14746981Manh57_mmandible shape 57 (mouse)54716974281169742Mouse
11041665Lmr24_mleishmaniasis resistance 24 (mouse)552694462107321041Mouse
11041899Lmr24a_mleishmaniasis resistance 24a (mouse)552694462107321041Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
1301243Bmd2_mbone mineral density 2 (mouse)Not determined555388334100455525Mouse
4142317Rgcs1_mretinal ganglion cell susceptible 1 (mouse)Not determined55388334108762627Mouse
13464248Ahl13_mage related hearing loss, early onset 13 (mouse)55564587489645995Mouse
10043962Obq27_mobesity QTL 27 (mouse)Not determined55628565590285655Mouse
10044005Ahl7_mage related hearing loss 7 (mouse)Not determined55833050292330641Mouse
11040591Lmr3c_mleishmaniasis resistance 3c (mouse)55960280193602980Mouse
11040592Lmr3d_mleishmaniasis resistance 3d (mouse)55960280193602980Mouse
11040589Lmr3a_mleishmaniasis resistance 3a (mouse)55960280193602980Mouse
11040590Lmr3b_mleishmaniasis resistance 3b (mouse)55960280193602980Mouse
1301843Listr1_mlisteriosis resistance 1 (mouse)Not determined56024608194246203Mouse
13464247Ahl14_mage related hearing loss, early onset 14 (mouse)56040306294403160Mouse
11252124Modvl6_mmodifier of vacuolated lens 6 (mouse)56265056896650688Mouse
4142428Modvl1_mmodifier of vacuolated lens 1 (mouse)Not determined6265056896650688Mouse
1301010ahl2_mage related hearing loss 2 (mouse)Not determined56265056896650688Mouse
13464250Ahl15_mage related hearing loss, early onset 15 (mouse)56265056896650688Mouse
10045972Tir5_mtrypanosome infection response 5 (mouse)Not determined563705442104387065Mouse
11049560Lmr24d_mleishmaniasis resistance 24d (mouse)56437487798374996Mouse
12904739M2fscn2_mmodifier 2 of FSCN2 (mouse)566529661100529661Mouse
12904740M1fscn2_mmodifier 1 of Fscn2 (mouse)566529661100529661Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)570057343132528839Mouse


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide AC127027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000122630
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl570,076,438 - 70,076,524 (+)Ensembl
GRCm38.p6 Ensembl569,919,095 - 69,919,181 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000084579 Ensembl, ENTREZGENE
MGD MGI:5453438 ENTREZGENE
NCBI Gene Gm23661 ENTREZGENE
PhenoGen Gm23661 PhenoGen