Vmn2r40 (vomeronasal 2, receptor 40) - Rat Genome Database

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Gene: Vmn2r40 (vomeronasal 2, receptor 40) Mus musculus
Analyze
No known orthologs.
Symbol: Vmn2r40
Name: vomeronasal 2, receptor 40
RGD ID: 1642864
MGI Page MGI
Description: Predicted to enable G protein-coupled receptor activity. Predicted to be active in plasma membrane.
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: vomeronasal receptor Vmn2r40
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3978,910,733 - 8,934,401 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl78,909,771 - 8,934,434 (-)EnsemblGRCm39 Ensembl
GRCm3878,907,734 - 8,931,402 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl78,906,772 - 8,931,435 (-)EnsemblGRCm38mm10GRCm38
MGSCv3779,246,439 - 9,270,107 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3679,246,337 - 9,270,665 (+)NCBIMGSCv36mm8
Cytogenetic Map7A1NCBI
cM Map75.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:17382427   PMID:21873635  


Genomics

Variants

.
Variants in Vmn2r40
64 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:593
Count of miRNA genes:335
Interacting mature miRNAs:368
Transcripts:ENSMUST00000169206, ENSMUST00000171942
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301177Vent3_mventricular size 3 (mouse)Not determined7120511925Mouse
10054067Sle20_msystematic lupus erythematosus susceptibility 20 (mouse)Not determined7120511925Mouse
1302188Lxw6_mlupus BXSB x NZW 6 (mouse)Not determined7121698146Mouse
12904941Edlmmq6_mextensor digitorum longus muscle mass QTL 6 (mouse)7121821047Mouse
12904948Tammq5_mtibialis anterior muscle mass QTL 5 (mouse)7121821047Mouse
12904953Gmmq5_mgastrocnemius muscle mass QTL 5 (mouse)7121821047Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1302115Abhr3_mallergen-induced bronchial hyperresponsiveness 3 (mouse)Not determined7331599616637423Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7335204824879418Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25394569Skmw57_mskeletal muscle weight 57, gastroc (mouse)7458046916687861Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000171942   ⟹   ENSMUSP00000132332
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl78,909,771 - 8,934,434 (-)Ensembl
GRCm38.p6 Ensembl78,906,772 - 8,931,435 (-)Ensembl
RefSeq Acc Id: NM_001105072   ⟹   NP_001098542
RefSeq Status: INFERRED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3978,910,733 - 8,934,401 (-)NCBI
GRCm3878,907,734 - 8,931,402 (-)ENTREZGENE
MGSCv3779,246,439 - 9,270,107 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017321893   ⟹   XP_017177382
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3978,910,733 - 8,934,401 (-)NCBI
GRCm3878,907,734 - 8,931,402 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001098542 (Get FASTA)   NCBI Sequence Viewer  
  XP_017177382 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000132332
  ENSMUSP00000132332.4
RefSeq Acc Id: NP_001098542   ⟸   NM_001105072
- Peptide Label: precursor
- UniProtKB: F6W043 (UniProtKB/TrEMBL),   O35202 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017177382   ⟸   XM_017321893
- Peptide Label: isoform X1
- UniProtKB: O35202 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000132332   ⟸   ENSMUST00000171942
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F6W043-F1-model_v2 AlphaFold F6W043 1-852 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3757872 AgrOrtholog
Ensembl Genes ENSMUSG00000090864 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000171942 ENTREZGENE
  ENSMUST00000171942.11 UniProtKB/TrEMBL
Gene3D-CATH 2.10.50.30 UniProtKB/TrEMBL
  3.40.50.2300 UniProtKB/TrEMBL
InterPro ANF_lig-bd_rcpt UniProtKB/TrEMBL
  GPCR_3 UniProtKB/TrEMBL
  GPCR_3_9-Cys_dom UniProtKB/TrEMBL
  GPCR_3_9-Cys_sf UniProtKB/TrEMBL
  GPCR_3_C UniProtKB/TrEMBL
  GPCR_3_Ca_sens_rcpt-rel UniProtKB/TrEMBL
  GPCR_3_vmron_rcpt_2 UniProtKB/TrEMBL
  Peripla_BP_I UniProtKB/TrEMBL
KEGG Report mmu:100042781 UniProtKB/TrEMBL
MGD MGI:3757872 ENTREZGENE
NCBI Gene 100042781 ENTREZGENE
PANTHER PTHR24061 UniProtKB/TrEMBL
  VOMERONASAL 2, RECEPTOR 29-RELATED UniProtKB/TrEMBL
Pfam 7tm_3 UniProtKB/TrEMBL
  ANF_receptor UniProtKB/TrEMBL
  NCD3G UniProtKB/TrEMBL
PhenoGen Vmn2r40 PhenoGen
PRINTS GPCRMGR UniProtKB/TrEMBL
  VOMERONASL2R UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F3_4 UniProtKB/TrEMBL
Superfamily-SCOP SSF53822 UniProtKB/TrEMBL
UniProt F6W043 ENTREZGENE, UniProtKB/TrEMBL
  O35202 ENTREZGENE