Gm13179 (predicted gene 13179) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Gm13179 (predicted gene 13179) Mus musculus
Analyze
Symbol: Gm13179
Name: predicted gene 13179
RGD ID: 1642117
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: predicted gene, OTTMUSG00000010754
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3924,591,300 - 4,599,350 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl24,590,835 - 4,592,098 (-)EnsemblGRCm39 Ensembl
GRCm3824,586,449 - 4,594,539 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl24,586,024 - 4,587,287 (-)EnsemblGRCm38mm10GRCm38
Celera24,538,715 - 4,546,794 (-)NCBICelera
Cytogenetic Map2A1NCBI
cM Map22.76NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

Variants

.
Variants in Gm13179
269 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:132
Count of miRNA genes:120
Interacting mature miRNAs:122
Transcripts:ENSMUST00000137801, ENSMUST00000151994
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10045633Heal15_mwound healing/regeneration 15 (mouse)Not determined2121989642Mouse
4141836Tgq11_mtriglyceride QTL 11 (mouse)Not determined125324559Mouse
4142333Tgq10_mtriglyceride QTL 10 (mouse)Not determined125324559Mouse
1301838Sluc16_msusceptibility to lung cancer 16 (mouse)Not determined2126529589Mouse
12904743Carcdq3_mcardiac collagen deposition QTL 3 (mouse)2323494028179150Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000137801
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl24,591,139 - 4,592,098 (-)Ensembl
GRCm38.p6 Ensembl24,586,328 - 4,587,287 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151994
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl24,590,835 - 4,592,098 (-)Ensembl
GRCm38.p6 Ensembl24,586,024 - 4,587,287 (-)Ensembl
RefSeq Acc Id: XR_865938
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3924,591,300 - 4,599,350 (-)NCBI
GRCm3824,586,489 - 4,594,539 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000086018 Ensembl
MGD MGI:3701958 ENTREZGENE
NCBI Gene 100124623 ENTREZGENE
PhenoGen Gm13179 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-04 Gm13179  predicted gene 13179  OTTMUSG00000010754  predicted gene, OTTMUSG00000010754  Symbol and/or name change 5135510 APPROVED