Mir760 (microRNA 760) - Rat Genome Database

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Gene: Mir760 (microRNA 760) Mus musculus
Analyze
Symbol: Mir760
Name: microRNA 760
RGD ID: 1625979
MGI Page MGI
Description: Acts upstream of or within cellular response to mechanical stimulus and long-term synaptic potentiation. Orthologous to human MIR760 (microRNA 760).
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: mir-7; mir-760; Mirn; Mirn760; mmu-mir-7; mmu-mir-760
RGD Orthologs
Human
Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393122,087,234 - 122,087,352 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3122,087,234 - 122,087,352 (-)EnsemblGRCm39 Ensembl
GRCm383122,293,585 - 122,293,703 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3122,293,585 - 122,293,703 (-)EnsemblGRCm38mm10GRCm38
MGSCv373121,996,503 - 121,996,621 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera3128,690,494 - 128,690,612 (-)NCBICelera
Cytogenetic Map3G1NCBI
cM Map352.94NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16381832   PMID:16954537   PMID:17604727   PMID:20215419   PMID:20413612   PMID:21037258   PMID:21267068   PMID:25858512   PMID:25959411   PMID:31661144   PMID:36894989  


Genomics

Comparative Map Data
Mir760
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393122,087,234 - 122,087,352 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3122,087,234 - 122,087,352 (-)EnsemblGRCm39 Ensembl
GRCm383122,293,585 - 122,293,703 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3122,293,585 - 122,293,703 (-)EnsemblGRCm38mm10GRCm38
MGSCv373121,996,503 - 121,996,621 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera3128,690,494 - 128,690,612 (-)NCBICelera
Cytogenetic Map3G1NCBI
cM Map352.94NCBI
MIR760
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38193,846,832 - 93,846,911 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl193,846,832 - 93,846,911 (+)EnsemblGRCh38hg38GRCh38
GRCh37194,312,388 - 94,312,467 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36194,084,975 - 94,085,054 (+)NCBINCBI36Build 36hg18NCBI36
Celera192,563,575 - 92,563,654 (+)NCBICelera
Cytogenetic Map1p22.1NCBI
HuRef192,431,033 - 92,431,112 (+)NCBIHuRef
CHM1_1194,427,384 - 94,427,463 (+)NCBICHM1_1
T2T-CHM13v2.0193,692,567 - 93,692,646 (+)NCBIT2T-CHM13v2.0
Mir760
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82213,077,269 - 213,077,348 (-)NCBIGRCr8
mRatBN7.22210,392,616 - 210,392,695 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2210,392,616 - 210,392,695 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2218,065,899 - 218,065,978 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02215,973,664 - 215,973,743 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02210,815,622 - 210,815,701 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02225,873,354 - 225,873,433 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2225,873,354 - 225,873,433 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02243,908,753 - 243,908,832 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2202,821,159 - 202,821,238 (-)NCBICelera
Cytogenetic Map2q42NCBI

Variants

.
Variants in Mir760
1 total Variants
miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:43937
Count of gene targets:15521
Count of transcripts:30037
Interacting mature miRNAs:mmu-miR-760-3p, mmu-miR-760-5p
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300619Cdcs1_mcytokine deficiency colitis susceptibility 1 (mouse)Not determined3109834882143835005Mouse
1300752Ap6q_malcohol preference 6 QTL (mouse)Not determined3100372912147045722Mouse
1301381Bomb1_mbone marrow pre-B 1 (mouse)Not determined3111133243145133417Mouse
1301349Pgia26_mproteoglycan induced arthritis 26 (mouse)Not determined392251533126251650Mouse
1301100Bdt2_mbone density traits 2 (mouse)Not determined3114736617148736784Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
1302151Lprm2_mlymphoproliferation modifier 2 (mouse)Not determined3119778857153779044Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391000105125008748Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1302093Orgwq5_morgan weight QTL 5 (mouse)Not determined3107376936147304689Mouse
1302114Tbs1_mtuberculosis severity 1 (mouse)Not determined398924105132924250Mouse
1301805Mors2_mmodifier of obesity related sterility 2 (mouse)Not determined3103482659137482783Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
1558868Ses9_msalmonella enteritidis susceptibility 9 (mouse)Not determined3119057332153057456Mouse
4142449Tgq14_mtriglyceride QTL 14 (mouse)Not determined119318586153318586Mouse
4141935Tgq15_mtriglyceride QTL 15 (mouse)Not determined119318586153318586Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
8655599Cia5c_mcollagen induced arthritis QTL 5c (mouse)Not determined3107376936125316237Mouse
10043919Afpq8_mabdominal fat percent QTL 8 (mouse)Not determined3119057332153057456Mouse
10043955Wt10q4_mbody weight, 10 weeks, QTL 4 (mouse)Not determined398624041132624197Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
10412240Alpq6_malcohol preference QTL 6 (mouse)Not determined3120772078154772078Mouse
12910796Pwbwq6_mpost-weaning body weight QTL 6 (mouse)3110084357135715812Mouse
12910815Ogrq1_moverall growth rate QTL 1 (mouse)3110084357135715812Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
12792984Modn1_mmodifier of Dstn neovascularization 1 (mouse)398635284132635383Mouse
12910793Pwbwq7_mpost-weaning body weight QTL 7 (mouse)3110084357135715812Mouse
11533920Mvb3_mmodifier of vibrator 3 (mouse)398635284132635383Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
26884419Bzwq6_mbi-zygomatic width QTL 6, 10 week (mouse)3100607316137205761Mouse
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
27226732Tibmd3_mtibia midshaft diameter 3, 10 week (mouse)396607316147805636Mouse
27226733Tibmd6_mtibia midshaft diameter 6, 16 week (mouse)3101307316149805637Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000103257
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3122,087,234 - 122,087,352 (-)Ensembl
GRCm38.p6 Ensembl3122,293,585 - 122,293,703 (-)Ensembl
RefSeq Acc Id: NR_030439
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393122,087,234 - 122,087,352 (-)NCBI
GRCm383122,293,585 - 122,293,703 (-)ENTREZGENE
MGSCv373121,996,503 - 121,996,621 (-)RGD
Celera3128,690,494 - 128,690,612 (-)RGD
cM Map3 ENTREZGENE
Sequence:
Promoters
RGD ID:6882254
Promoter ID:EPDNEW_M4578
Type:initiation region
Name:Mir760_1
Description:Mus musculus microRNA 760 , microRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383122,293,752 - 122,293,812EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3691613 AgrOrtholog
Ensembl Genes ENSMUSG00000076456 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000103257 ENTREZGENE
MGD MGI:3691613 ENTREZGENE
miRBase MI0004605 ENTREZGENE
NCBI Gene 791077 ENTREZGENE
PhenoGen Mir760 PhenoGen
RNAcentral URS00001E535B RNACentral
  URS0000512C88 RNACentral
  URS000075E591 RNACentral