Rhox3h (reproductive homeobox 3H) - Rat Genome Database

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Pathways
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Gene: Rhox3h (reproductive homeobox 3H) Mus musculus
Analyze
No known orthologs.
Symbol: Rhox3h
Name: reproductive homeobox 3H
RGD ID: 1624880
MGI Page MGI
Description: ASSOCIATED WITH pulmonary fibrosis; INTERACTS WITH folic acid; titanium dioxide
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: EG434758; reproductive homeobox 3G; Rhox3; Rhox3.8; Rhox3g
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
NCBI Annotation Information: Note: This gene was previously named "Rhox3g" by MacLean, et. al. Genesis (2006) 44:122 (PubMed ID: 16496311) and "Rhox3.8" by Morris, et. al. Mamm. Genome (2006) 17:178 (PubMed ID: 16465597). Its official nomenclature is now Rhox3h. [07 Jan 2013]
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X36,839,341 - 36,850,417 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX36,839,341 - 36,850,417 (-)EnsemblGRCm39 Ensembl
GRCm38X37,657,688 - 37,668,764 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX37,657,688 - 37,668,764 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X35,072,195 - 35,083,271 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X33,963,645 - 33,974,715 (-)NCBIMGSCv36mm8
CeleraX25,398,115 - 25,409,334 (-)NCBICelera
Cytogenetic MapXA3.3NCBI
cM MapX21.96NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15707895   PMID:16465597   PMID:16496311  


Genomics

Variants

.
Variants in Rhox3h
283 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:159
Count of miRNA genes:91
Interacting mature miRNAs:91
Transcripts:ENSMUST00000096457, ENSMUST00000184824, ENSMUST00000185138
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
1301551Spha1_msperm head anomaly 1 (mouse)Not determinedX1026622539921652Mouse
13208553Wght11_mweight 11 (mouse)X1186623959045360Mouse
13208557Lgth13_mbody length 13 (mouse)X1186623959045360Mouse
1558721Bw1_mbody weight QTL 1 (mouse)Not determinedX2060678347179225Mouse
12738418Lfibq12_mliver fibrosis QTL 12 (mouse)X2572817443635700Mouse
27226750Femd9_mfemur midshaft diameter 9, 10 week (mouse)X3333746355845360Mouse
27226780Femd12_mfemur midshaft diameter 12, 16 week (mouse)X3466365356845360Mouse
13208567Bmiq12_mbody mass index QTL 12 (mouse)X3526365377043606Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001114157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL808133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000096457   ⟹   ENSMUSP00000094196
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX36,839,341 - 36,850,417 (-)Ensembl
GRCm38.p6 EnsemblX37,657,688 - 37,668,764 (-)Ensembl
RefSeq Acc Id: ENSMUST00000184824   ⟹   ENSMUSP00000139320
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX36,839,341 - 36,843,315 (-)Ensembl
GRCm38.p6 EnsemblX37,657,688 - 37,661,662 (-)Ensembl
RefSeq Acc Id: ENSMUST00000185138   ⟹   ENSMUSP00000138867
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX36,839,341 - 36,843,315 (-)Ensembl
GRCm38.p6 EnsemblX37,657,688 - 37,661,662 (-)Ensembl
RefSeq Acc Id: NM_001114157   ⟹   NP_001107629
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X36,839,341 - 36,850,417 (-)NCBI
GRCm38X37,657,688 - 37,668,764 (-)ENTREZGENE
MGSCv37X35,072,195 - 35,083,271 (-)RGD
CeleraX25,398,115 - 25,409,334 (-)RGD
cM MapX ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001107629 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000094196
  ENSMUSP00000094196.5
  ENSMUSP00000138867.2
  ENSMUSP00000139320.2
Reference Protein Sequences
RefSeq Acc Id: NP_001107629   ⟸   NM_001114157
- UniProtKB: L7MU37 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000139320   ⟸   ENSMUST00000184824
RefSeq Acc Id: ENSMUSP00000138867   ⟸   ENSMUST00000185138
RefSeq Acc Id: ENSMUSP00000094196   ⟸   ENSMUST00000096457
Protein Domains
Homeobox

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-L7MU37-F1-model_v2 AlphaFold L7MU37 1-215 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3704137 AgrOrtholog
Ensembl Genes ENSMUSG00000071769 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000096457 ENTREZGENE
  ENSMUST00000096457.7 UniProtKB/TrEMBL
  ENSMUST00000184824.7 UniProtKB/TrEMBL
  ENSMUST00000185138.8 UniProtKB/TrEMBL
Gene3D-CATH Homeodomain-like UniProtKB/TrEMBL
InterPro Homeodomain UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
KEGG Report mmu:434758 UniProtKB/TrEMBL
MGD MGI:3704137 ENTREZGENE
NCBI Gene 434758 ENTREZGENE
PANTHER MCG113260-RELATED-RELATED UniProtKB/TrEMBL
  PTHR47465:SF4 UniProtKB/TrEMBL
Pfam Homeobox UniProtKB/TrEMBL
PhenoGen Rhox3h PhenoGen
PROSITE HOMEOBOX_2 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
Superfamily-SCOP Homeodomain_like UniProtKB/TrEMBL
UniProt L7MU37 ENTREZGENE, UniProtKB/TrEMBL
  V9GWW8_MOUSE UniProtKB/TrEMBL
  V9GXU1_MOUSE UniProtKB/TrEMBL