Krtap20-21 (keratin associated protein 20-21) - Rat Genome Database

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Gene: Krtap20-21 (keratin associated protein 20-21) Mus musculus
Analyze
Symbol: Krtap20-21 (Ensembl: Gm9789)
Name: keratin associated protein 20-21 (Ensembl:predicted gene 9789)
RGD ID: 1624579
MGI Page MGI
Description: Orthologous to human KRTAP20-1 (keratin associated protein 20-1) and KRTAP20-2 (keratin associated protein 20-2); INTERACTS WITH aflatoxin B1 (ortholog); benzo[a]pyrene (ortholog); cadmium atom (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ENSMUSG00000044227; Gm9789; MGC58416; uncharacterized protein LOC640627
RGD Orthologs
Human
Rat
Bonobo
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391688,954,804 - 88,955,296 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1688,954,840 - 88,955,236 (+)EnsemblGRCm39 Ensembl
GRCm381689,157,916 - 89,158,408 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1689,157,952 - 89,158,348 (+)EnsemblGRCm38mm10GRCm38
MGSCv371689,158,159 - 89,158,652 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361689,158,159 - 89,158,652 (+)NCBIMGSCv36mm8
Celera1689,360,808 - 89,361,297 (+)NCBICelera
Cytogenetic Map16C3.3NCBI
cM Map1651.42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073  


Genomics

Comparative Map Data
Krtap20-21
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391688,954,804 - 88,955,296 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1688,954,840 - 88,955,236 (+)EnsemblGRCm39 Ensembl
GRCm381689,157,916 - 89,158,408 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1689,157,952 - 89,158,348 (+)EnsemblGRCm38mm10GRCm38
MGSCv371689,158,159 - 89,158,652 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361689,158,159 - 89,158,652 (+)NCBIMGSCv36mm8
Celera1689,360,808 - 89,361,297 (+)NCBICelera
Cytogenetic Map16C3.3NCBI
cM Map1651.42NCBI
KRTAP20-1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382130,616,425 - 30,616,699 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2130,616,425 - 30,616,699 (+)EnsemblGRCh38hg38GRCh38
GRCh372131,988,744 - 31,989,018 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362130,910,645 - 30,910,815 (+)NCBINCBI36Build 36hg18NCBI36
Build 342130,910,644 - 30,910,815NCBI
Celera2117,172,204 - 17,172,374 (+)NCBICelera
Cytogenetic Map21q22.11NCBI
HuRef2117,397,569 - 17,397,739 (+)NCBIHuRef
CHM1_12131,550,505 - 31,550,675 (+)NCBICHM1_1
T2T-CHM13v2.02128,983,365 - 28,983,639 (+)NCBIT2T-CHM13v2.0
Krtap20-1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81141,844,653 - 41,844,811 (+)NCBIGRCr8
mRatBN7.21128,358,441 - 28,358,599 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1128,430,089 - 28,430,247 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1128,419,189 - 28,419,344 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01129,008,240 - 29,008,678 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1129,008,267 - 29,008,425 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01132,626,754 - 32,626,912 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1128,066,825 - 28,067,263 (+)NCBICelera
Cytogenetic Map11q11NCBI
LOC130541099
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22226,730,110 - 26,730,384 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12121,585,652 - 21,585,926 (+)NCBINHGRI_mPanPan1
LOC119621497
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_0236660714,114,320 - 4,116,102 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Krtap20-21
8 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:52
Count of miRNA genes:51
Interacting mature miRNAs:52
Transcripts:ENSMUST00000062524
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
1302096Aod1a_mautoimmune ovarian dysgenesis 1a (mouse)Not determined163544664392573008Mouse
1301364Lith14_mlithogenic gene 14 (mouse)Not determined165566184689661961Mouse
1301125Sluc27_msusceptibility to lung cancer 27 (mouse)Not determined166160864495608764Mouse
4141113Tgq28_mtriglyceride QTL 28 (mouse)Not determined6298664696986646Mouse
1300928Etia_methanol induced activation (mouse)Not determined166331390797314016Mouse
1558740Bpq9_mblood pressure QTL 9 (mouse)Not determined166332733697327472Mouse
1302194Pgia10_mproteoglycan induced arthritis 10 (mouse)Not determined166860072298008968Mouse
1301032Tauph_mtau phosphorylation (mouse)Not determined166907613298008968Mouse
11049573Lmr18b_mleishmaniasis resistance 18b (mouse)166912761198008968Mouse
11049574Lmr18a_mleishmaniasis resistance 18a (mouse)166912761198008968Mouse
4142262Lmr18_mleishmaniasis resistance 18 (mouse)Not determined166912761198008968Mouse
11522753Cocia19_mcocaine-induced activity, QTL 19 (mouse)166925448298008968Mouse
1301598Renf2_mrenal failure 2 (mouse)Not determined167038025298008968Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000062524   ⟹   ENSMUSP00000055898
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1688,954,840 - 88,955,236 (+)Ensembl
GRCm38.p6 Ensembl1689,157,952 - 89,158,348 (+)Ensembl
RefSeq Acc Id: NM_001357999   ⟹   NP_001344928
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391688,954,804 - 88,955,296 (+)NCBI
GRCm381689,157,916 - 89,158,408 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001344928 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH48518 (Get FASTA)   NCBI Sequence Viewer  
  BAC36456 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000055898
  ENSMUSP00000055898.5
Reference Protein Sequences
RefSeq Acc Id: NP_001344928   ⟸   NM_001357999
- UniProtKB: Q8BIG3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000055898   ⟸   ENSMUST00000062524

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BIG3-F1-model_v2 AlphaFold Q8BIG3 1-52 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3642043 AgrOrtholog
Ensembl Genes ENSMUSG00000044227 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000062524 ENTREZGENE
  ENSMUST00000062524.6 UniProtKB/TrEMBL
InterPro KRTAP UniProtKB/TrEMBL
MGD MGI:3642043 ENTREZGENE
NCBI Gene 640627 ENTREZGENE
PANTHER KERATIN-ASSOCIATED PROTEIN 20-1 UniProtKB/TrEMBL
  KERATIN-ASSOCIATED PROTEIN 20-2 UniProtKB/TrEMBL
Pfam KRTAP UniProtKB/TrEMBL
PhenoGen Krtap20-21 PhenoGen
UniProt Q8BIG3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-02-26 Krtap20-21  keratin associated protein 20-21  Gm9789  predicted gene 9789  Symbol and/or name updated 27372883 PROVISIONAL