Trdv5 (T cell receptor delta variable 5) - Rat Genome Database

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Gene: Trdv5 (T cell receptor delta variable 5) Mus musculus
Analyze
Symbol: Trdv5
Name: T cell receptor delta variable 5
RGD ID: 1624409
MGI Page MGI
Description: Predicted to be involved in immune response. Predicted to be active in extracellular space. Orthologous to human TRDV3 (T cell receptor delta variable 3).
Type: gene (Ensembl: TR_V_gene)
RefSeq Status: VALIDATED
Previously known as: EG626545; Gm6683; predicted gene, EG626545; Tcrd
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391454,386,119 - 54,386,658 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1454,386,119 - 54,386,751 (-)EnsemblGRCm39 Ensembl
GRCm381454,148,662 - 54,149,201 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1454,148,662 - 54,149,294 (-)EnsemblGRCm38mm10GRCm38
MGSCv371454,768,335 - 54,778,873 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361445,238,770 - 45,239,868 (-)NCBIMGSCv36mm8
MGSCv361453,106,226 - 53,107,324 (-)NCBIMGSCv36mm8
Cytogenetic Map14C2NCBI
cM Map1427.67NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:3263646   PMID:15608191   PMID:21873635  


Genomics

Comparative Map Data
Trdv5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391454,386,119 - 54,386,658 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1454,386,119 - 54,386,751 (-)EnsemblGRCm39 Ensembl
GRCm381454,148,662 - 54,149,201 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1454,148,662 - 54,149,294 (-)EnsemblGRCm38mm10GRCm38
MGSCv371454,768,335 - 54,778,873 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361445,238,770 - 45,239,868 (-)NCBIMGSCv36mm8
MGSCv361453,106,226 - 53,107,324 (-)NCBIMGSCv36mm8
Cytogenetic Map14C2NCBI
cM Map1427.67NCBI
TRDV3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381422,469,041 - 22,469,614 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1422,469,041 - 22,469,698 (-)EnsemblGRCh38hg38GRCh38
GRCh371422,938,033 - 22,938,606 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361422,007,873 - 22,008,446 (-)NCBINCBI36Build 36hg18NCBI36
Celera142,800,984 - 2,801,557 (-)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef143,056,180 - 3,056,753 (-)NCBIHuRef
CHM1_11422,936,943 - 22,937,516 (-)NCBICHM1_1
T2T-CHM13v2.01416,666,799 - 16,667,372 (-)NCBIT2T-CHM13v2.0

Variants

.
Variants in Trdv5
11 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:209
Count of miRNA genes:190
Interacting mature miRNAs:203
Transcripts:ENSMUST00000103685
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
4141484Hcbip1_mhexachlorobenzene induced porphyria 1 (mouse)Not determined4733525059962593Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
4142310Carg1_mCandida albicans resistance gene 1 (mouse)Not determined5138245954461655Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145393744087937440Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000103685   ⟹   ENSMUSP00000100458
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1454,386,119 - 54,386,751 (-)Ensembl
GRCm38.p6 Ensembl1454,148,662 - 54,149,294 (-)Ensembl
Protein Sequences
GenBank Protein AAB59680 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000100458.2
Reference Protein Sequences
RefSeq Acc Id: ENSMUSP00000100458   ⟸   ENSMUST00000103685
Protein Domains
Ig-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A075B661-F1-model_v2 AlphaFold A0A075B661 1-115 view protein structure

Promoters
RGD ID:8682314
Promoter ID:EPDNEW_M19188
Type:initiation region
Name:Trdv5_1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381454,149,227 - 54,149,287EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3704133 AgrOrtholog
Ensembl Genes ENSMUSG00000076873 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000103685.3 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
MGD MGI:3704133 ENTREZGENE
NCBI Gene 626545 ENTREZGENE
PANTHER T CELL RECEPTOR DELTA VARIABLE 3 UniProtKB/TrEMBL
  T-CELL RECEPTOR ALPHA CHAIN V REGION UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
PhenoGen Trdv5 PhenoGen
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGv UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A075B661_MOUSE UniProtKB/TrEMBL
  Q5R1A2_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-12 Trdv5  T cell receptor delta variable 5  EG626545  predicted gene, EG626545  Symbol and/or name change 5135510 APPROVED