Srprb (signal recognition particle receptor, B subunit) - Rat Genome Database

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Gene: Srprb (signal recognition particle receptor, B subunit) Mus musculus
Analyze
Symbol: Srprb
Name: signal recognition particle receptor, B subunit
RGD ID: 1624076
MGI Page MGI
Description: Predicted to enable ubiquitin protein ligase binding activity. Predicted to be involved in protein targeting to ER. Part of signal recognition particle receptor complex. Is expressed in several structures, including bone; brain; cardiovascular system; genitourinary system; and gut. Orthologous to human SRPRB (SRP receptor subunit beta).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: AA409543; signal recognition particle receptor subunit beta; SR-beta
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399103,065,232 - 103,079,264 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9103,065,231 - 103,079,336 (-)EnsemblGRCm39 Ensembl
GRCm389103,188,033 - 103,202,065 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9103,188,032 - 103,202,137 (-)EnsemblGRCm38mm10GRCm38
MGSCv379103,090,363 - 103,104,395 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369103,046,183 - 103,060,215 (-)NCBIMGSCv36mm8
Celera9102,738,664 - 102,752,618 (-)NCBICelera
Cytogenetic Map9F1NCBI
cM Map955.0NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2-palmitoylglycerol  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
4,4'-sulfonyldiphenol  (EXP)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (ISO)
6-propyl-2-thiouracil  (ISO)
all-trans-retinoic acid  (ISO)
amiodarone  (ISO)
aristolochic acid A  (ISO)
benzbromarone  (ISO)
benzo[a]pyrene  (EXP)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
buspirone  (ISO)
caffeine  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP,ISO)
CGP 52608  (ISO)
chlorpyrifos  (EXP)
clofibrate  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (EXP,ISO)
dicrotophos  (ISO)
Enterolactone  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (EXP)
flutamide  (ISO)
fulvestrant  (ISO)
furan  (ISO)
genistein  (EXP)
gentamycin  (ISO)
glafenine  (ISO)
hydrogen peroxide  (ISO)
ivermectin  (ISO)
L-ethionine  (ISO)
methidathion  (EXP)
omeprazole  (ISO)
paracetamol  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
pirinixic acid  (ISO)
propiconazole  (EXP)
resveratrol  (EXP)
silicon dioxide  (EXP)
sodium arsenite  (ISO)
Soman  (ISO)
tamoxifen  (EXP)
temozolomide  (ISO)
testosterone  (EXP,ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
tolcapone  (ISO)
trichostatin A  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7844142   PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12904583   PMID:14610273  
PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16439358   PMID:21267068   PMID:21873635   PMID:22375059   PMID:24194600   PMID:27113764   PMID:28378742   PMID:30196744  
PMID:30335684   PMID:30457570   PMID:30550785   PMID:35670107   PMID:36114006   PMID:36417873   PMID:38355793  


Genomics

Comparative Map Data
Srprb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399103,065,232 - 103,079,264 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9103,065,231 - 103,079,336 (-)EnsemblGRCm39 Ensembl
GRCm389103,188,033 - 103,202,065 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9103,188,032 - 103,202,137 (-)EnsemblGRCm38mm10GRCm38
MGSCv379103,090,363 - 103,104,395 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369103,046,183 - 103,060,215 (-)NCBIMGSCv36mm8
Celera9102,738,664 - 102,752,618 (-)NCBICelera
Cytogenetic Map9F1NCBI
cM Map955.0NCBI
SRPRB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383133,784,023 - 133,828,574 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3133,784,023 - 133,825,772 (+)EnsemblGRCh38hg38GRCh38
GRCh373133,502,867 - 133,547,418 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363135,007,367 - 135,022,213 (+)NCBINCBI36Build 36hg18NCBI36
Build 343135,007,374 - 135,022,221NCBI
Celera3131,929,996 - 131,966,138 (+)NCBICelera
Cytogenetic Map3q22.1NCBI
HuRef3130,882,540 - 130,918,525 (+)NCBIHuRef
CHM1_13133,466,291 - 133,504,281 (+)NCBICHM1_1
T2T-CHM13v2.03136,529,221 - 136,573,768 (+)NCBIT2T-CHM13v2.0
Srprb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88112,647,577 - 112,661,524 (-)NCBIGRCr8
mRatBN7.28103,768,685 - 103,782,632 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx8109,428,103 - 109,442,062 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08107,627,269 - 107,641,228 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08105,469,951 - 105,483,910 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08111,673,479 - 111,687,426 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08111,064,462 - 111,078,409 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48108,196,684 - 108,210,631 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18108,216,139 - 108,230,086 (-)NCBI
Celera8103,146,886 - 103,160,831 (-)NCBICelera
Cytogenetic Map8q32NCBI
Srprb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555014,784,266 - 4,796,587 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555014,784,266 - 4,796,587 (-)NCBIChiLan1.0ChiLan1.0
SRPRB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22131,714,334 - 131,744,840 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13131,719,063 - 131,748,877 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03130,850,953 - 130,865,940 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13138,325,988 - 138,342,056 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3138,325,988 - 138,342,056 (+)Ensemblpanpan1.1panPan2
SRPRB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12330,687,508 - 30,711,275 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2330,687,554 - 30,710,245 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2330,666,628 - 30,690,423 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02331,207,919 - 31,231,735 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2331,207,938 - 31,232,693 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12330,901,725 - 30,925,521 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02330,959,521 - 30,983,300 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02331,207,112 - 31,230,923 (+)NCBIUU_Cfam_GSD_1.0
Srprb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560270,191,983 - 70,207,044 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365296,952,540 - 6,966,661 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365296,952,472 - 6,967,542 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SRPRB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1374,975,677 - 75,010,212 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11374,976,030 - 75,010,200 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21382,474,463 - 82,508,621 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SRPRB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11556,545,201 - 56,580,591 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1556,544,391 - 56,560,045 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604129,526,995 - 29,563,179 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Srprb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473010,114,281 - 10,133,794 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473010,114,870 - 10,131,833 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Srprb
467 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:988
Count of miRNA genes:514
Interacting mature miRNAs:632
Transcripts:ENSMUST00000035157, ENSMUST00000163567
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959897283109089068Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63239711120191934Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63239711120191934Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963239711120191934Mouse
1301302Pas4_mpulmonary adenoma susceptibility 4 (mouse)Not determined969121898103121973Mouse
1301621Hpic1_mhaloperidol-induced catalepsy 1 (mouse)Not determined969428566103428698Mouse
1301573Etohcta8_methanol conditioned taste aversion 8 (mouse)Not determined972859058106859205Mouse
10054068El8_mepilepsy 8 (mouse)Not determined972859058106859205Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974250230108250378Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975682646114303447Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975682646114303447Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976417989110418183Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978522698112522808Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979279863113279941Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981680321115680445Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982792386116792481Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982792386116792481Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982792386116792481Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984406017118406120Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985779563108518385Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986107600120107729Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986121898120118690Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986625682120625682Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987677199121677199Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989162124123162124Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989289476123289595Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989440541123440541Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989859058118767089Mouse
12910770Splic1_mspleen iron content 1 (mouse)991291078124359700Mouse
12910772Lvic6_mliver iron content 6 (mouse)991291078124359700Mouse
12910773Splic3_mspleen iron content 3 (mouse)991291078124359700Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991518283124359700Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991518283124359700Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991518283124359700Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991518283124359700Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991518283124359700Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991518283124359700Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991560372124359700Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991560372124359700Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991560372124359700Mouse
1301484Bwq6_mbody weight (mouse)Not determined993591658124359700Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993591658124359700Mouse
14746992Manh67_mmandible shape 67 (mouse)993865836124359700Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994863354112701997Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996746658124359700Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9100889929124359700Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9101829255124359700Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9101829255124359700Mouse

Markers in Region
RH126543  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389103,189,126 - 103,189,375UniSTSGRCm38
MGSCv379103,091,456 - 103,091,705UniSTSGRCm37
Celera9102,739,757 - 102,740,006UniSTS
Cytogenetic Map9F1UniSTS
Whitehead/MRC_RH91053.84UniSTS
RH124868  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389103,189,280 - 103,189,368UniSTSGRCm38
MGSCv379103,091,610 - 103,091,698UniSTSGRCm37
Celera9102,739,911 - 102,739,999UniSTS
Cytogenetic Map9F1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_009275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC156633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK007859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK015469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U17343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000035157   ⟹   ENSMUSP00000035157
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9103,065,231 - 103,079,336 (-)Ensembl
GRCm38.p6 Ensembl9103,188,032 - 103,202,137 (-)Ensembl
RefSeq Acc Id: ENSMUST00000163567
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9103,066,289 - 103,079,328 (-)Ensembl
GRCm38.p6 Ensembl9103,189,090 - 103,202,129 (-)Ensembl
RefSeq Acc Id: ENSMUST00000190760   ⟹   ENSMUSP00000151899
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9103,067,600 - 103,069,511 (-)Ensembl
GRCm38.p6 Ensembl9103,190,401 - 103,192,312 (-)Ensembl
RefSeq Acc Id: NM_009275   ⟹   NP_033301
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399103,065,232 - 103,079,264 (-)NCBI
GRCm389103,188,033 - 103,202,065 (-)ENTREZGENE
MGSCv379103,090,363 - 103,104,395 (-)RGD
Celera9102,738,664 - 102,752,618 (-)RGD
cM Map9 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_033301   ⟸   NM_009275
- UniProtKB: Q544X9 (UniProtKB/Swiss-Prot),   Q9D872 (UniProtKB/Swiss-Prot),   P47758 (UniProtKB/Swiss-Prot),   Q542X6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000035157   ⟸   ENSMUST00000035157
RefSeq Acc Id: ENSMUSP00000151899   ⟸   ENSMUST00000190760

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P47758-F1-model_v2 AlphaFold P47758 1-269 view protein structure

Promoters
RGD ID:6845212
Promoter ID:MM_KWN:58576
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:UC009RGH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369103,094,776 - 103,095,276 (-)MPROMDB
RGD ID:6845213
Promoter ID:MM_KWN:58577
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000035157
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369103,104,101 - 103,104,601 (-)MPROMDB
RGD ID:8670628
Promoter ID:EPDNEW_M13345
Type:initiation region
Name:Srprb_1
Description:Mus musculus signal recognition particle receptor, B subunit, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389103,202,129 - 103,202,189EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:102964 AgrOrtholog
Ensembl Genes ENSMUSG00000032553 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000035157 ENTREZGENE
  ENSMUST00000035157.10 UniProtKB/Swiss-Prot
  ENSMUST00000190760.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SRP_receptor_beta_su UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20818 UniProtKB/Swiss-Prot
MGD MGI:102964 ENTREZGENE
NCBI Gene 20818 ENTREZGENE
PANTHER ADP RIBOSYLATION FACTOR-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT BETA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SRPRB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Srprb PhenoGen
PROSITE ARF UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1W2P830_MOUSE UniProtKB/TrEMBL
  P47758 ENTREZGENE
  Q542X6 ENTREZGENE, UniProtKB/TrEMBL
  Q544X9 ENTREZGENE
  Q9D872 ENTREZGENE
  SRPRB_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q544X9 UniProtKB/Swiss-Prot
  Q9D872 UniProtKB/Swiss-Prot