Or5e1 (olfactory receptor family 5 subfamily E member 1) - Rat Genome Database

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Gene: Or5e1 (olfactory receptor family 5 subfamily E member 1) Mus musculus
Analyze
Symbol: Or5e1
Name: olfactory receptor family 5 subfamily E member 1
RGD ID: 1623743
MGI Page MGI
Description: Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be located in membrane.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: GA_x6K02T2PBJ9-11084889-11085818; MGC130300; MGC130301; MOR195; MOR195-1; olfactory receptor 513; olfactory receptor MOR195-1; Olfr513
RGD Orthologs
Human
Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397108,354,065 - 108,354,994 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7108,350,180 - 108,356,007 (+)EnsemblGRCm39 Ensembl
GRCm387108,754,858 - 108,755,787 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7108,750,973 - 108,756,800 (+)EnsemblGRCm38mm10GRCm38
MGSCv377115,898,372 - 115,899,301 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367108,546,035 - 108,546,964 (+)NCBIMGSCv36mm8
Celera7108,731,193 - 108,732,122 (+)NCBICelera
Cytogenetic Map7E3NCBI
cM Map757.21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (ISA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11802173   PMID:11875048   PMID:12477932   PMID:14611657   PMID:21267068   PMID:21873635   PMID:23090999   PMID:32295537  


Genomics

Comparative Map Data
Or5e1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397108,354,065 - 108,354,994 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7108,350,180 - 108,356,007 (+)EnsemblGRCm39 Ensembl
GRCm387108,754,858 - 108,755,787 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7108,750,973 - 108,756,800 (+)EnsemblGRCm38mm10GRCm38
MGSCv377115,898,372 - 115,899,301 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367108,546,035 - 108,546,964 (+)NCBIMGSCv36mm8
Celera7108,731,193 - 108,732,122 (+)NCBICelera
Cytogenetic Map7E3NCBI
cM Map757.21NCBI
OR5E1P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38117,849,051 - 7,849,571 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl117,848,700 - 7,849,626 (+)EnsemblGRCh38hg38GRCh38
GRCh37117,870,598 - 7,871,118 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36117,826,723 - 7,827,855 (+)NCBINCBI36Build 36hg18NCBI36
Build 34117,827,196 - 7,827,671NCBI
Celera117,986,111 - 7,986,631 (+)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef117,537,382 - 7,537,902 (+)NCBIHuRef
CHM1_1117,869,575 - 7,870,095 (+)NCBICHM1_1
T2T-CHM13v2.0117,928,232 - 7,928,752 (+)NCBIT2T-CHM13v2.0
Or5e1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81172,159,177 - 172,160,112 (+)NCBIGRCr8
mRatBN7.21162,724,328 - 162,725,263 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1162,718,237 - 162,727,919 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01173,047,640 - 173,048,604 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1173,047,669 - 173,048,604 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01180,045,153 - 180,046,088 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1160,631,569 - 160,632,533 (+)NCBICelera
Cytogenetic Map1q33NCBI

Variants

.
Variants in Or5e1
32 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:75
Count of miRNA genes:75
Interacting mature miRNAs:75
Transcripts:ENSMUST00000055146
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)774849748122199223Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
1301566Adip3_madiposity 3 (mouse)Not determined775394215109394346Mouse
14746989Manh62_mmandible shape 62 (mouse)775742528109742528Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
10412110Cctq1_mcentral corneal thickness QTL 1 (mouse)Not determined780551681114551791Mouse
4142500Morq1_mmodifier of Rs1 QTL 1 (mouse)Not determined80551681114551791Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
27095923Pglq3_mpelvic girdle length QTL 3, 5 week (mouse)781249748124199223Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse
27226763Feml20_mfemur length 20, 16 week (mouse)785049208124199223Mouse
1301997Cia7_mcollagen induced arthritis QTL 7 (mouse)Not determined785365595112533819Mouse
1301647Elpt_melevated leptin (mouse)Not determined786500186120500329Mouse
1301188Heal6_mwound healing/regeneration 6 (mouse)Not determined787043932121044066Mouse
1302062Stheal6_msoft tissue heal 6 (mouse)Not determined787043932121044066Mouse
13463473Hbbcq4_mhemoglobin concentration QTL 4 (mouse)787043932121044066Mouse
1301781Capsq3_mcapsaicin sensitivity related QTL 3 (mouse)Not determined787143137119485380Mouse
27226769Tibl12_mtibia length 12, 10 week (mouse)787249208126499172Mouse
27226790Feml15_mfemur length 15, 10 week (mouse)787249208126499172Mouse
1357664Nba3_mNew Zealand Black autoimmunity 3 (mouse)Not determined791482996125483156Mouse
1301937Skull10_mskull morphology 10 (mouse)Not determined791482996125483156Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793391848127392041Mouse
1301478Eae26_msusceptibility to experimental allergic encephalomyelitis 26 (mouse)Not determined798164922132165010Mouse
13524850Asrq7_macoustic startle response 7 (mouse)798394974132394974Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined799837716133837716Mouse
11039524Tbbr3_mTrypanosoma brucei brucei response 3 (mouse)7100750722134750843Mouse
1301447Fembm3_mfemoral bone morphometry 3 (mouse)Not determined7100993261134993342Mouse
1357460Vtbt4_mvertebral trabecular bone trait 4 (mouse)Not determined7101693381135693530Mouse
1301105Cfld4_mcystic fibrosis lung disease 4 (mouse)Not determined7101693381135693530Mouse
1300721Cfbw3_mcystic fibrosis body weight 3 (mouse)Not determined7101693381135693530Mouse
4142312Nilac4_mnicotine induced locomotor activity 4 (mouse)Not determined7102485219136485380Mouse
5491192Mobq1_mmultigenic obesity QTL 1 (mouse)Not determined7105250663139250811Mouse
13524852Asrq7a_macoustic startle response 7a (mouse)7105350008139350008Mouse
25394573Skmw62_mskeletal muscle weight 62, gastroc (mouse)7106893715110612309Mouse
13524524Bodwtq6_mbody wweight QTL 6 (mouse)7107245693113055693Mouse

Markers in Region
UniSTS:489419  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387108,754,858 - 108,755,787UniSTSGRCm38
MGSCv377115,898,372 - 115,899,301UniSTSGRCm37
Celera7108,731,193 - 108,732,122UniSTS
Cytogenetic Map7E3UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000055146   ⟹   ENSMUSP00000050578
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7108,354,065 - 108,354,994 (+)Ensembl
GRCm38.p6 Ensembl7108,754,858 - 108,755,787 (+)Ensembl
RefSeq Acc Id: ENSMUST00000214670   ⟹   ENSMUSP00000149440
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7108,350,180 - 108,356,007 (+)Ensembl
GRCm38.p6 Ensembl7108,750,973 - 108,756,800 (+)Ensembl
RefSeq Acc Id: NM_146723   ⟹   NP_666934
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397108,354,065 - 108,354,994 (+)NCBI
GRCm387108,754,858 - 108,755,787 (+)ENTREZGENE
MGSCv377115,898,372 - 115,899,301 (+)RGD
Celera7108,731,193 - 108,732,122 (+)RGD
cM Map7 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_666934   ⟸   NM_146723
- UniProtKB: Q8VFZ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000050578   ⟸   ENSMUST00000055146
RefSeq Acc Id: ENSMUSP00000149440   ⟸   ENSMUST00000214670
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8VFZ3-F1-model_v2 AlphaFold Q8VFZ3 1-309 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3030347 AgrOrtholog
Ensembl Genes ENSMUSG00000051200 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000055146 ENTREZGENE
  ENSMUST00000055146.4 UniProtKB/TrEMBL
  ENSMUST00000214670.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report mmu:258718 UniProtKB/TrEMBL
MGD MGI:3030347 ENTREZGENE
NCBI Gene 258718 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or5e1 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt Q8VFZ3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-24 Or5e1  olfactory receptor family 5 subfamily E member 1  Olfr513  olfactory receptor 513  Symbol and/or name change 5135510 APPROVED