4930578I06Rik (RIKEN cDNA 4930578I06 gene) - Rat Genome Database

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Gene: 4930578I06Rik (RIKEN cDNA 4930578I06 gene) Mus musculus
Analyze
Symbol: 4930578I06Rik
Name: RIKEN cDNA 4930578I06 gene
RGD ID: 1623206
MGI Page MGI
Description: Orthologous to human C8orf74 (chromosome 8 open reading frame 74).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI429111; hypothetical protein LOC67750; uncharacterized protein C8orf74 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391464,208,570 - 64,225,229 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1464,206,788 - 64,225,239 (-)EnsemblGRCm39 Ensembl
GRCm381463,971,121 - 63,987,780 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1463,969,339 - 63,987,790 (-)EnsemblGRCm38mm10GRCm38
MGSCv371464,589,959 - 64,606,617 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361462,923,449 - 62,941,900 (-)NCBIMGSCv36mm8
Celera1461,748,124 - 61,764,780 (-)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1433.34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15489334   PMID:15613475   PMID:16141072   PMID:16141073  


Genomics

Comparative Map Data
4930578I06Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391464,208,570 - 64,225,229 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1464,206,788 - 64,225,239 (-)EnsemblGRCm39 Ensembl
GRCm381463,971,121 - 63,987,780 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1463,969,339 - 63,987,790 (-)EnsemblGRCm38mm10GRCm38
MGSCv371464,589,959 - 64,606,617 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361462,923,449 - 62,941,900 (-)NCBIMGSCv36mm8
Celera1461,748,124 - 61,764,780 (-)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1433.34NCBI
C8orf74
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38810,672,628 - 10,700,590 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl810,672,628 - 10,700,590 (+)EnsemblGRCh38hg38GRCh38
GRCh37810,530,138 - 10,558,100 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36810,567,557 - 10,595,513 (+)NCBINCBI36Build 36hg18NCBI36
Celera89,658,009 - 9,685,862 (+)NCBICelera
Cytogenetic Map8p23.1NCBI
HuRef89,460,643 - 9,488,406 (+)NCBIHuRef
CHM1_1810,595,741 - 10,623,612 (+)NCBICHM1_1
T2T-CHM13v2.089,038,498 - 9,066,367 (-)NCBIT2T-CHM13v2.0
C15h8orf74
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81542,384,768 - 42,401,641 (-)NCBIGRCr8
mRatBN7.21538,208,864 - 38,225,737 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1538,208,864 - 38,225,737 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1540,066,177 - 40,083,084 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01541,216,862 - 41,233,771 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01539,669,457 - 39,686,341 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01547,322,058 - 47,338,931 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1547,322,076 - 47,338,976 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01551,081,452 - 51,098,325 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41543,236,341 - 43,253,214 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1537,890,446 - 37,907,319 (-)NCBICelera
Cytogenetic Map15p12NCBI
CUNH8orf74
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540352,224,523 - 52,240,567 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540352,224,529 - 52,240,276 (+)NCBIChiLan1.0ChiLan1.0
C7H8orf74
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2727,129,497 - 27,161,157 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan183,161,934 - 3,193,621 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v088,506,220 - 8,534,431 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
C25H8orf74
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12527,244,758 - 27,269,731 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2527,244,756 - 27,269,638 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2527,901,610 - 27,927,184 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02527,400,103 - 27,425,077 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2527,400,101 - 27,425,463 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12527,354,216 - 27,379,792 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02527,248,398 - 27,273,382 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02527,402,282 - 27,427,276 (-)NCBIUU_Cfam_GSD_1.0
CUNH8orf74
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049435,989,360 - 6,007,721 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366752,578,490 - 2,596,685 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366752,578,470 - 2,596,685 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C14H8orf74
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1413,890,107 - 13,915,841 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11413,890,346 - 13,916,783 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21415,237,141 - 15,263,567 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH8orf74
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.188,398,245 - 8,426,890 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl88,398,377 - 8,426,744 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605233,997,843 - 34,030,072 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH8orf74
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475824,525,826 - 24,542,168 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475824,525,826 - 24,546,108 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in 4930578I06Rik
509 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:124
Count of miRNA genes:112
Interacting mature miRNAs:122
Transcripts:ENSMUST00000022532
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145393744087937440Mouse
10043889Cia52_mcollagen induced arthritis QTL 52 (mouse)Not determined145608238190082509Mouse
1301562Hwq1_mheart weight quantitative locus 1 (mouse)Not determined145654674590546941Mouse
1357565wrmod1_mwobbler modifier 1 (mouse)Not determined1458179640101859473Mouse
11039527Ccc2_mcolitis susceptibility in the Collaborative Cross 2 (mouse)145991861294138217Mouse
1300666Fembm2_mfemoral bone morphometry 2 (mouse)Not determined146239746096397680Mouse

Markers in Region
D14Mit31  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381463,984,558 - 63,984,671UniSTSGRCm38
MGSCv371464,603,395 - 64,603,508UniSTSGRCm37
Celera1461,761,560 - 61,761,672UniSTS
Cytogenetic Map14C3UniSTS
cM Map1428.0UniSTS
Whitehead Genetic1436.1UniSTS
Whitehead/MRC_RH14720.92UniSTS
Whitehead_YAC14 UniSTS
AI429111  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381463,971,297 - 63,971,444UniSTSGRCm38
MGSCv371464,590,134 - 64,590,281UniSTSGRCm37
Celera1461,748,299 - 61,748,446UniSTS
Cytogenetic Map14C3UniSTS
Whitehead/MRC_RH14727.87UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000022532   ⟹   ENSMUSP00000022532
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1464,208,571 - 64,225,229 (-)Ensembl
GRCm38.p6 Ensembl1463,971,122 - 63,987,780 (-)Ensembl
RefSeq Acc Id: ENSMUST00000224600   ⟹   ENSMUSP00000152904
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1464,206,788 - 64,225,239 (-)Ensembl
GRCm38.p6 Ensembl1463,969,339 - 63,987,790 (-)Ensembl
RefSeq Acc Id: ENSMUST00000225544
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1464,208,861 - 64,224,952 (-)Ensembl
GRCm38.p6 Ensembl1463,971,412 - 63,987,503 (-)Ensembl
RefSeq Acc Id: NM_026359   ⟹   NP_080635
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391464,208,571 - 64,225,229 (-)NCBI
GRCm381463,971,122 - 63,987,780 (-)NCBI
MGSCv371464,589,959 - 64,606,617 (-)RGD
Celera1461,748,124 - 61,764,780 (-)RGD
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006519472   ⟹   XP_006519535
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391464,208,570 - 64,225,120 (-)NCBI
GRCm381463,971,121 - 63,987,671 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_080635   ⟸   NM_026359
- UniProtKB: Q9CVZ7 (UniProtKB/Swiss-Prot),   Q80ZQ3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006519535   ⟸   XM_006519472
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000152904   ⟸   ENSMUST00000224600
RefSeq Acc Id: ENSMUSP00000022532   ⟸   ENSMUST00000022532

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q80ZQ3-F1-model_v2 AlphaFold Q80ZQ3 1-298 view protein structure

Promoters
RGD ID:8682744
Promoter ID:EPDNEW_M19389
Type:initiation region
Name:4930578I06Rik_1
Description:Mus musculus RIKEN cDNA 4930578I06 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381463,987,760 - 63,987,820EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1915000 AgrOrtholog
Ensembl Genes ENSMUSG00000021961 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000022532 ENTREZGENE
  ENSMUST00000022532.6 UniProtKB/Swiss-Prot
  ENSMUST00000224600.2 UniProtKB/Swiss-Prot
InterPro CLAMP UniProtKB/Swiss-Prot
KEGG Report mmu:67750 UniProtKB/Swiss-Prot
MGD MGI:1915000 ENTREZGENE
NCBI Gene 67750 ENTREZGENE
PANTHER PTHR28457 UniProtKB/Swiss-Prot
  SIMILAR TO 4930578I06RIK PROTEIN UniProtKB/Swiss-Prot
Pfam CLAMP UniProtKB/Swiss-Prot
PhenoGen 4930578I06Rik PhenoGen
UniProt CH074_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q9CVZ7 ENTREZGENE
UniProt Secondary Q9CVZ7 UniProtKB/Swiss-Prot