Gpatch2l (G patch domain containing 2 like) - Rat Genome Database

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Gene: Gpatch2l (G patch domain containing 2 like) Mus musculus
Analyze
Symbol: Gpatch2l
Name: G patch domain containing 2 like
RGD ID: 1623183
MGI Page MGI
Description: Predicted to be active in nucleus. Orthologous to human GPATCH2L (G-patch domain containing 2 like).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700020O03Rik; 4732487G21Rik; A630090I05Rik; G patch domain-containing protein 2-like; hypothetical protein LOC70373; Kiaa1152; uncharacterized protein C14orf118 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391286,288,569 - 86,341,439 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1286,288,632 - 86,338,558 (+)EnsemblGRCm39 Ensembl
GRCm381286,241,795 - 86,294,657 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1286,241,858 - 86,291,784 (+)EnsemblGRCm38mm10GRCm38
MGSCv371287,582,828 - 87,632,318 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361287,130,981 - 87,180,471 (+)NCBIMGSCv36mm8
Celera1287,702,997 - 87,752,504 (+)NCBICelera
Cytogenetic Map12D2NCBI
cM Map1240.36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12466851   PMID:12477932   PMID:12520002   PMID:14621295   PMID:15489334   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:18799693   PMID:21677750   PMID:21873635   PMID:32968282   PMID:34321999   PMID:38355793  


Genomics

Comparative Map Data
Gpatch2l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391286,288,569 - 86,341,439 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1286,288,632 - 86,338,558 (+)EnsemblGRCm39 Ensembl
GRCm381286,241,795 - 86,294,657 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1286,241,858 - 86,291,784 (+)EnsemblGRCm38mm10GRCm38
MGSCv371287,582,828 - 87,632,318 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361287,130,981 - 87,180,471 (+)NCBIMGSCv36mm8
Celera1287,702,997 - 87,752,504 (+)NCBICelera
Cytogenetic Map12D2NCBI
cM Map1240.36NCBI
GPATCH2L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381476,151,922 - 76,235,555 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1476,151,916 - 76,254,342 (+)EnsemblGRCh38hg38GRCh38
GRCh371476,618,265 - 76,680,686 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361475,688,012 - 75,738,887 (+)NCBINCBI36Build 36hg18NCBI36
Build 341475,688,011 - 75,738,886NCBI
Celera1456,656,362 - 56,707,266 (+)NCBICelera
Cytogenetic Map14q24.3NCBI
HuRef1456,786,734 - 56,837,359 (+)NCBIHuRef
CHM1_11476,556,028 - 76,606,927 (+)NCBICHM1_1
T2T-CHM13v2.01470,361,062 - 70,423,507 (+)NCBIT2T-CHM13v2.0
Gpatch2l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86111,614,344 - 111,666,603 (+)NCBIGRCr8
mRatBN7.26105,883,383 - 105,935,644 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6105,883,460 - 105,934,888 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6106,053,587 - 106,101,153 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06106,352,473 - 106,400,045 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06105,722,104 - 105,769,666 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06110,093,767 - 110,228,943 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6110,093,819 - 110,227,475 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06119,400,117 - 119,436,183 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.06119,518,540 - 119,527,025 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46110,354,283 - 110,404,857 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16110,357,809 - 110,409,578 (+)NCBI
Celera6103,709,800 - 103,760,327 (+)NCBICelera
Cytogenetic Map6q31NCBI
Gpatch2l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955438214,706 - 261,686 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955438214,882 - 263,937 (+)NCBIChiLan1.0ChiLan1.0
GPATCH2L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21577,240,971 - 77,327,866 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11476,457,478 - 76,528,201 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01456,710,528 - 56,776,832 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11475,553,827 - 75,613,381 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1475,554,507 - 75,606,594 (+)Ensemblpanpan1.1panPan2
GPATCH2L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1849,101,267 - 49,157,008 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl849,101,138 - 49,152,491 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha848,783,617 - 48,839,352 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0849,325,352 - 49,381,100 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl849,325,391 - 49,381,310 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1848,997,696 - 49,053,414 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0849,019,620 - 49,075,348 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0849,415,932 - 49,471,712 (+)NCBIUU_Cfam_GSD_1.0
Gpatch2l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864026,856,662 - 26,915,102 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364885,153,875 - 5,202,956 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364885,153,877 - 5,205,515 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPATCH2L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl799,325,569 - 99,375,428 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1799,325,536 - 99,376,291 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27105,370,849 - 105,426,505 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GPATCH2L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12453,401,799 - 53,453,023 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2453,401,822 - 53,452,080 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605341,618,112 - 41,680,046 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gpatch2l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473425,516,772 - 25,562,927 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473425,461,801 - 25,562,896 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gpatch2l
2019 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:838
Count of miRNA genes:499
Interacting mature miRNAs:603
Transcripts:ENSMUST00000071106
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300883Ath21_matherosclerosis 21 (mouse)Not determined1285961579119961683Mouse
1300633Cdcs7_mcytokine deficiency colitis susceptibility 7 (mouse)Not determined126468908398689229Mouse
1301046Par3_mpulmonary adenoma resistance 3 (mouse)Not determined126395670897956883Mouse
1301337Cdcs8_mcytokine deficiency colitis susceptibility 8 (mouse)Not determined126468908398689229Mouse
1301689Skull18_mskull morphology 18 (mouse)Not determined1273887422107887526Mouse
1301476Pbwg12_mpostnatal body weight growth 12 (mouse)Not determined126204016496040364Mouse
1301492Dbsty3_mdiabesity 3 (mouse)Not determined1283532075117532224Mouse
1301879Insq10_minsulin QTL 10 (mouse)Not determined1283532075117532224Mouse
1301926Adip6_madiposity 6 (mouse)Not determined1273887422107887526Mouse
1357749Vtbt13_mvertebral trabecular bone trait 13 (mouse)Not determined125313200287132145Mouse
1357757Lnopy2_mlens opacity 2 (mouse)Not determined125284662686846796Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse
4141335W6q10_mweight 6 weeks QTL 10 (mouse)Not determined80956708113383533Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
4141610Tailaq1_mtail length adjusted QTL 1 (mouse)Not determined80956708113383533Mouse
4141738Tgq23_mtriglyceride QTL 23 (mouse)Not determined72112877106112877Mouse
4142401Egq10_mearly growth QTL 10 (mouse)Not determined80956708113383533Mouse
10043895Bw20_mbody weight QTL 20 (mouse)Not determined126230825296308252Mouse
10043948Pbft6_mpercent body fat 6 (mouse)Not determined126120542795205427Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
13524842Ppiq10a_mprepulse inhibition QTL 10a (mouse)1277512220111512220Mouse
13524846Ppiq11_mprepulse inhibition QTL 11 (mouse)1282666396116666396Mouse
13524849Ppiq11a_mprepulse inhibition QTL 11a (mouse)1280989143114989143Mouse
27226771Tibl14_mtibia length 14, 10 week (mouse)126834677498766259Mouse
27226776Tibl6_mtibia length 6, 5 week (mouse)126064678692666774Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268346774113363620Mouse
27226797Scvln19_msacral vertebrae length 2, 16 week (mouse)126214678699466259Mouse
25823169Hrsq8_mhost response to SARS QTL 8, log titer (mouse)1281696245108495368Mouse
14746976Manh73_mmandible shape 73 (mouse)126585713199857131Mouse
39128213Lwq23_mliver weight QTL 10 (mouse)1280956708113383533Mouse
27226728Tibl20_mtibia length 20, 16 week (mouse)125914678693866774Mouse

Markers in Region
UniSTS:236909  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381286,244,054 - 86,244,367UniSTSGRCm38
MGSCv371287,585,004 - 87,585,317UniSTSGRCm37
Celera1287,705,173 - 87,705,486UniSTS
Cytogenetic Map12D3UniSTS
UniSTS:236910  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381286,262,436 - 86,262,530UniSTSGRCm38
MGSCv371287,603,386 - 87,603,480UniSTSGRCm37
Celera1287,723,556 - 87,723,650UniSTS
Cytogenetic Map12D3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001324488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_027405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006516219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006516220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006516222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC159318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK006185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC044824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC048169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE685832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY146148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000071106   ⟹   ENSMUSP00000065858
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1286,288,649 - 86,338,144 (+)Ensembl
GRCm38.p6 Ensembl1286,241,875 - 86,291,370 (+)Ensembl
RefSeq Acc Id: ENSMUST00000220646
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1286,306,253 - 86,309,341 (+)Ensembl
GRCm38.p6 Ensembl1286,259,479 - 86,262,567 (+)Ensembl
RefSeq Acc Id: ENSMUST00000220810
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1286,303,706 - 86,304,063 (+)Ensembl
GRCm38.p6 Ensembl1286,256,932 - 86,257,289 (+)Ensembl
RefSeq Acc Id: ENSMUST00000221368   ⟹   ENSMUSP00000152284
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1286,288,632 - 86,338,558 (+)Ensembl
GRCm38.p6 Ensembl1286,241,858 - 86,291,784 (+)Ensembl
RefSeq Acc Id: ENSMUST00000222299
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1286,308,450 - 86,310,113 (+)Ensembl
GRCm38.p6 Ensembl1286,261,676 - 86,263,339 (+)Ensembl
RefSeq Acc Id: NM_001324488   ⟹   NP_001311417
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391286,288,632 - 86,338,559 (+)NCBI
GRCm381286,241,858 - 86,291,785 (+)NCBI
Sequence:
RefSeq Acc Id: NM_027405   ⟹   NP_081681
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391286,288,632 - 86,338,142 (+)NCBI
GRCm381286,241,858 - 86,291,368 (+)NCBI
MGSCv371287,582,828 - 87,632,318 (+)RGD
Celera1287,702,997 - 87,752,504 (+)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006516219   ⟹   XP_006516282
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391286,288,569 - 86,341,439 (+)NCBI
GRCm381286,241,795 - 86,294,657 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006516220   ⟹   XP_006516283
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391286,288,569 - 86,341,439 (+)NCBI
GRCm381286,241,795 - 86,294,657 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006516222   ⟹   XP_006516285
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391286,288,569 - 86,341,439 (+)NCBI
GRCm381286,241,795 - 86,294,657 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017315181   ⟹   XP_017170670
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391286,303,712 - 86,341,439 (+)NCBI
GRCm381286,256,938 - 86,294,657 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246903   ⟹   XP_030102763
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391286,288,569 - 86,313,065 (+)NCBI
GRCm381286,241,795 - 86,267,137 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157609   ⟹   XP_036013502
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391286,288,569 - 86,341,439 (+)NCBI
Sequence:
RefSeq Acc Id: NP_081681   ⟸   NM_027405
- Peptide Label: isoform 1
- UniProtKB: Q8CD08 (UniProtKB/Swiss-Prot),   Q6ZPW9 (UniProtKB/Swiss-Prot),   Q9DA49 (UniProtKB/Swiss-Prot),   Q6PE65 (UniProtKB/Swiss-Prot),   Q3UGI2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006516282   ⟸   XM_006516219
- Peptide Label: isoform X1
- UniProtKB: Q3UGI2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006516283   ⟸   XM_006516220
- Peptide Label: isoform X2
- UniProtKB: Q3UGI2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006516285   ⟸   XM_006516222
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: NP_001311417   ⟸   NM_001324488
- Peptide Label: isoform 2
- UniProtKB: Q3UGI2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017170670   ⟸   XM_017315181
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_030102763   ⟸   XM_030246903
- Peptide Label: isoform X3
RefSeq Acc Id: ENSMUSP00000065858   ⟸   ENSMUST00000071106
RefSeq Acc Id: ENSMUSP00000152284   ⟸   ENSMUST00000221368
RefSeq Acc Id: XP_036013502   ⟸   XM_036157609
- Peptide Label: isoform X4

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6PE65-F1-model_v2 AlphaFold Q6PE65 1-482 view protein structure

Promoters
RGD ID:8678856
Promoter ID:EPDNEW_M17459
Type:initiation region
Name:Gpatch2l_1
Description:Mus musculus G patch domain containing 2 like , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381286,241,894 - 86,241,954EPDNEW
RGD ID:6823111
Promoter ID:MM_KWN:12223
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000071106,   UC007OHS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361287,582,521 - 87,583,021 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1917623 AgrOrtholog
Ensembl Genes ENSMUSG00000021254 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000071106 ENTREZGENE
  ENSMUST00000071106.6 UniProtKB/Swiss-Prot
  ENSMUST00000221368 ENTREZGENE
  ENSMUST00000221368.2 UniProtKB/Swiss-Prot
KEGG Report mmu:70373 UniProtKB/Swiss-Prot
MGD MGI:1917623 ENTREZGENE
NCBI Gene 70373 ENTREZGENE
PANTHER G PATCH DOMAIN CONTAINING PROTEIN 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G PATCH DOMAIN-CONTAINING PROTEIN 2-LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gpatch2l PhenoGen
UniProt GPT2L_MOUSE UniProtKB/Swiss-Prot
  Q3UGI2 ENTREZGENE, UniProtKB/TrEMBL
  Q6PE65 ENTREZGENE
  Q6ZPW9 ENTREZGENE
  Q8CD08 ENTREZGENE
  Q9DA49 ENTREZGENE
UniProt Secondary Q6ZPW9 UniProtKB/Swiss-Prot
  Q8CD08 UniProtKB/Swiss-Prot
  Q9DA49 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-11-27 Gpatch2l  G patch domain containing 2 like  1700020O03Rik  RIKEN cDNA 1700020O03 gene  Symbol and/or name change 5135510 APPROVED