Sec16a (SEC16 homolog A, endoplasmic reticulum export factor) - Rat Genome Database

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Gene: Sec16a (SEC16 homolog A, endoplasmic reticulum export factor) Mus musculus
Analyze
Symbol: Sec16a
Name: SEC16 homolog A, endoplasmic reticulum export factor
RGD ID: 1622970
MGI Page MGI
Description: Involved in endoplasmic reticulum organization; protein exit from endoplasmic reticulum; and protein localization to plasma membrane. Located in endoplasmic reticulum exit site and perinuclear region of cytoplasm. Orthologous to human SEC16A (SEC16 homolog A, endoplasmic reticulum export factor).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AU024582; C230052J16Rik; MGC38812; p250; RP23-306D20.10; SEC16 homolog A
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39226,299,443 - 26,336,138 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl226,299,443 - 26,335,228 (-)EnsemblGRCm39 Ensembl
GRCm38226,409,431 - 26,446,293 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl226,409,431 - 26,445,216 (-)EnsemblGRCm38mm10GRCm38
MGSCv37226,264,951 - 26,300,736 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36226,231,445 - 26,250,355 (-)NCBIMGSCv36mm8
Celera226,127,145 - 26,163,053 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map218.89NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3-chloropropane-1,2-diol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (EXP)
acrolein  (ISO)
aflatoxin B1  (EXP,ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
antirheumatic drug  (ISO)
arsenous acid  (EXP)
benzene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Brodifacoum  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (EXP)
dicrotophos  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (ISO)
enzyme inhibitor  (ISO)
fenthion  (EXP)
fluoranthene  (EXP)
flutamide  (ISO)
folic acid  (EXP)
FR900359  (ISO)
glafenine  (ISO)
glyphosate  (EXP)
indometacin  (ISO)
inulin  (EXP)
ivermectin  (ISO)
leflunomide  (ISO)
methapyrilene  (ISO)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
ozone  (ISO)
paracetamol  (ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
phenethyl isothiocyanate  (ISO)
phenobarbital  (EXP,ISO)
potassium dichromate  (ISO)
selenium atom  (ISO)
sodium arsenite  (EXP)
sunitinib  (ISO)
tamibarotene  (ISO)
testosterone  (EXP)
triptonide  (EXP)
tungsten  (EXP)
valproic acid  (ISO)
vitamin E  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7671812   PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12466851   PMID:12477932   PMID:12520002  
PMID:12693553   PMID:14610273   PMID:16141072   PMID:16141073   PMID:17428803   PMID:18799693   PMID:21677750   PMID:21873635   PMID:23892456   PMID:25201882   PMID:27354378   PMID:28671696  
PMID:29099309   PMID:29187380   PMID:30550785   PMID:34255829   PMID:35449600   PMID:36114006  


Genomics

Comparative Map Data
Sec16a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39226,299,443 - 26,336,138 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl226,299,443 - 26,335,228 (-)EnsemblGRCm39 Ensembl
GRCm38226,409,431 - 26,446,293 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl226,409,431 - 26,445,216 (-)EnsemblGRCm38mm10GRCm38
MGSCv37226,264,951 - 26,300,736 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36226,231,445 - 26,250,355 (-)NCBIMGSCv36mm8
Celera226,127,145 - 26,163,053 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map218.89NCBI
SEC16A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389136,440,105 - 136,484,740 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9136,440,096 - 136,483,759 (-)EnsemblGRCh38hg38GRCh38
GRCh379139,334,557 - 139,378,235 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369138,454,369 - 138,497,328 (-)NCBINCBI36Build 36hg18NCBI36
Celera9109,849,015 - 109,891,964 (-)NCBICelera
Cytogenetic Map9q34.3NCBI
HuRef9108,793,635 - 108,837,485 (-)NCBIHuRef
CHM1_19139,482,991 - 139,526,945 (-)NCBICHM1_1
T2T-CHM13v2.09148,669,197 - 148,713,859 (-)NCBIT2T-CHM13v2.0
Sec16a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8329,627,779 - 29,662,925 (-)NCBIGRCr8
mRatBN7.239,229,687 - 9,264,837 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl39,229,687 - 9,264,273 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx312,283,667 - 12,318,439 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0320,866,897 - 20,901,669 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0319,122,236 - 19,157,008 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.033,856,218 - 3,890,785 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl33,856,218 - 3,890,758 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.039,217,446 - 9,252,578 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.434,583,882 - 4,613,980 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera34,049,023 - 4,084,074 (-)NCBICelera
Cytogenetic Map3p13NCBI
Sec16a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555134,273,581 - 4,303,157 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555134,272,623 - 4,304,314 (+)NCBIChiLan1.0ChiLan1.0
SEC16A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2112,897,588 - 2,943,143 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan192,899,923 - 2,945,478 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09107,516,556 - 107,560,930 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19136,493,957 - 136,533,672 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9136,493,957 - 136,533,655 (-)Ensemblpanpan1.1panPan2
SEC16A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1949,027,190 - 49,060,858 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl949,031,669 - 49,060,848 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha948,277,816 - 48,311,534 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0949,903,885 - 49,937,614 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl949,903,923 - 49,937,604 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1948,684,649 - 48,718,370 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0948,978,370 - 49,012,325 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0949,026,101 - 49,059,830 (+)NCBIUU_Cfam_GSD_1.0
Sec16a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947201,999,577 - 202,031,070 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366691,343,879 - 1,375,508 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366691,344,019 - 1,375,483 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEC16A
(Sus scrofa - pig)
No map positions available.
SEC16A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1121,718,520 - 1,763,562 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl121,724,838 - 1,761,941 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660583,452,828 - 3,498,315 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sec16a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247601,594,899 - 1,629,409 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247601,595,021 - 1,628,985 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sec16a
996 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2210
Count of miRNA genes:651
Interacting mature miRNAs:803
Transcripts:ENSMUST00000091252, ENSMUST00000114082, ENSMUST00000148306, ENSMUST00000149010, ENSMUST00000153996, ENSMUST00000154486, ENSMUST00000155252, ENSMUST00000156442
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301838Sluc16_msusceptibility to lung cancer 16 (mouse)Not determined2126529589Mouse
12904743Carcdq3_mcardiac collagen deposition QTL 3 (mouse)2323494028179150Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2767911541679261Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2823629642236396Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2830805142308240Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2938444643384575Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2938444643384575Mouse
12903993Opfaq1_mopen field activity QTL 1 (mouse)2967669127022642Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21421456748214713Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22112972555129871Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2112972555129871Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22368914557689269Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22459001254890012Mouse
8552705Cia25_mcollagen induced arthritis 25 (mouse)Not determined22467911533523172Mouse
8552706Cia24_mcollagen induced arthritis QTL 24 (mouse)Not determined22467911533523172Mouse
12792980Fbmd1_mfemoral bone mineral density 1, females only (mouse)22503449245034492Mouse
4142130Pgis2_mproteoglycan induced spondylitis 2 (mouse)Not determined22530805156971811Mouse

Markers in Region
AU024582  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38226,409,640 - 26,409,730UniSTSGRCm38
MGSCv37226,265,160 - 26,265,250UniSTSGRCm37
Celera226,127,354 - 26,127,444UniSTS
Cytogenetic Map2A3UniSTS
Whitehead/MRC_RH2449.94UniSTS
UniSTS:234350  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38226,409,667 - 26,409,746UniSTSGRCm38
MGSCv37226,265,187 - 26,265,266UniSTSGRCm37
Celera226,127,381 - 26,127,460UniSTS
Cytogenetic Map2A3UniSTS
UniSTS:234353  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38226,410,429 - 26,410,602UniSTSGRCm38
MGSCv37226,265,949 - 26,266,122UniSTSGRCm37
Celera226,128,143 - 26,128,316UniSTS
Cytogenetic Map2A3UniSTS
px-56c9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8C1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map16C3.1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic Map11A3.2UniSTS
Cytogenetic Map11B1.2UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map12D2UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapYA1UniSTS
cM Map520.0UniSTS
cM Map621.0UniSTS
cM Map1238.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_153125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011239073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA388295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI851539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL732541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC042603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC059898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF456838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ950511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU704044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA463107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ098463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK638146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO432077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CV883992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX236472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000091252   ⟹   ENSMUSP00000088796
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl226,299,445 - 26,335,228 (-)Ensembl
GRCm38.p6 Ensembl226,409,433 - 26,445,216 (-)Ensembl
RefSeq Acc Id: ENSMUST00000114082   ⟹   ENSMUSP00000109716
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl226,299,443 - 26,335,226 (-)Ensembl
GRCm38.p6 Ensembl226,409,431 - 26,445,214 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148306
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl226,304,391 - 26,309,768 (-)Ensembl
GRCm38.p6 Ensembl226,414,379 - 26,419,756 (-)Ensembl
RefSeq Acc Id: ENSMUST00000149010
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl226,300,301 - 26,303,064 (-)Ensembl
GRCm38.p6 Ensembl226,410,289 - 26,413,052 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153996   ⟹   ENSMUSP00000121179
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl226,325,994 - 26,329,767 (-)Ensembl
GRCm38.p6 Ensembl226,435,982 - 26,439,755 (-)Ensembl
RefSeq Acc Id: ENSMUST00000154486
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl226,300,731 - 26,306,242 (-)Ensembl
GRCm38.p6 Ensembl226,410,719 - 26,416,230 (-)Ensembl
RefSeq Acc Id: ENSMUST00000155252
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl226,331,976 - 26,335,212 (-)Ensembl
GRCm38.p6 Ensembl226,441,964 - 26,445,200 (-)Ensembl
RefSeq Acc Id: ENSMUST00000156442   ⟹   ENSMUSP00000122255
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl226,299,443 - 26,319,524 (-)Ensembl
GRCm38.p6 Ensembl226,409,431 - 26,429,512 (-)Ensembl
RefSeq Acc Id: NM_153125   ⟹   NP_694765
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39226,299,443 - 26,335,228 (-)NCBI
GRCm38226,409,431 - 26,445,216 (-)NCBI
MGSCv37226,264,951 - 26,300,736 (-)RGD
Celera226,127,145 - 26,163,053 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006497910   ⟹   XP_006497973
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39226,299,443 - 26,336,138 (-)NCBI
GRCm38226,412,562 - 26,446,293 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006497911   ⟹   XP_006497974
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39226,299,443 - 26,335,303 (-)NCBI
GRCm38226,409,431 - 26,445,291 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006497913   ⟹   XP_006497976
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39226,299,443 - 26,335,303 (-)NCBI
GRCm38226,409,431 - 26,445,291 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011239073   ⟹   XP_011237375
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39226,299,443 - 26,335,303 (-)NCBI
GRCm38226,409,431 - 26,445,291 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030249768   ⟹   XP_030105628
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39226,299,443 - 26,335,695 (-)NCBI
GRCm38226,412,562 - 26,445,681 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160765   ⟹   XP_036016658
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39226,299,443 - 26,335,303 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160767   ⟹   XP_036016660
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39226,299,443 - 26,335,303 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160773   ⟹   XP_036016666
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39226,299,443 - 26,335,303 (-)NCBI
Sequence:
RefSeq Acc Id: NP_694765   ⟸   NM_153125
- UniProtKB: A2AIX1 (UniProtKB/Swiss-Prot),   Q811L5 (UniProtKB/Swiss-Prot),   E9QAT4 (UniProtKB/TrEMBL),   Q80U43 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006497974   ⟸   XM_006497911
- Peptide Label: isoform X3
- UniProtKB: A2AIX1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006497976   ⟸   XM_006497913
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006497973   ⟸   XM_006497910
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011237375   ⟸   XM_011239073
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_030105628   ⟸   XM_030249768
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000088796   ⟸   ENSMUST00000091252
RefSeq Acc Id: ENSMUSP00000109716   ⟸   ENSMUST00000114082
RefSeq Acc Id: ENSMUSP00000121179   ⟸   ENSMUST00000153996
RefSeq Acc Id: ENSMUSP00000122255   ⟸   ENSMUST00000156442
RefSeq Acc Id: XP_036016666   ⟸   XM_036160773
- Peptide Label: isoform X5
RefSeq Acc Id: XP_036016660   ⟸   XM_036160767
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036016658   ⟸   XM_036160765
- Peptide Label: isoform X1
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9QAT4-F1-model_v2 AlphaFold E9QAT4 1-2357 view protein structure

Promoters
RGD ID:6832663
Promoter ID:MM_KWN:28273
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Liver
Transcripts:OTTMUST00000030651
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36226,268,531 - 26,269,031 (-)MPROMDB
RGD ID:6832662
Promoter ID:MM_KWN:28274
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   MEF_B6
Transcripts:OTTMUST00000030649
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36226,272,149 - 26,272,649 (-)MPROMDB
RGD ID:6832661
Promoter ID:MM_KWN:28276
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Liver,   Spleen
Transcripts:OTTMUST00000030556
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36226,284,736 - 26,286,012 (-)MPROMDB
RGD ID:6832664
Promoter ID:MM_KWN:28277
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:UC008IVH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36226,285,786 - 26,286,286 (-)MPROMDB
RGD ID:6832665
Promoter ID:MM_KWN:28278
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung
Transcripts:ENSMUST00000028290,   OTTMUST00000030650,   UC008IVJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36226,294,046 - 26,297,137 (-)MPROMDB
RGD ID:6832468
Promoter ID:MM_KWN:28279
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_153125,   OTTMUST00000030555,   OTTMUST00000030652,   OTTMUST00000030668,   OTTMUST00000030669,   OTTMUST00000030670
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36226,299,671 - 26,301,672 (+)MPROMDB
RGD ID:6876700
Promoter ID:EPDNEW_M1801
Type:initiation region
Name:Sec16a_1
Description:Mus musculus SEC16 homolog A, endoplasmic reticulum export factor, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38226,445,192 - 26,445,252EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2139207 AgrOrtholog
Ensembl Genes ENSMUSG00000026924 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000091252 ENTREZGENE
  ENSMUST00000091252.5 UniProtKB/Swiss-Prot
  ENSMUST00000114082 ENTREZGENE
  ENSMUST00000114082.9 UniProtKB/Swiss-Prot
  ENSMUST00000153996.2 UniProtKB/TrEMBL
  ENSMUST00000156442.8 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.1030 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ACE1_Sec16_Sec31 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sec16 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sec16_CCD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:227648 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2139207 ENTREZGENE
NCBI Gene 227648 ENTREZGENE
PANTHER PROTEIN TRANSPORT PROTEIN SEC16A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13402 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Sec16 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sec16_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sec16a PhenoGen
UniProt A2AIX1 ENTREZGENE
  E9QAT4 ENTREZGENE
  F6T8X6_MOUSE UniProtKB/TrEMBL
  F7BPW6_MOUSE UniProtKB/TrEMBL
  Q3TRA8_MOUSE UniProtKB/TrEMBL
  Q3TZR0_MOUSE UniProtKB/TrEMBL
  Q80U43 ENTREZGENE
  Q811L5 ENTREZGENE
  Q8K000_MOUSE UniProtKB/TrEMBL
  Q8R336_MOUSE UniProtKB/TrEMBL
  SC16A_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary A2AIX1 UniProtKB/Swiss-Prot
  Q80U43 UniProtKB/Swiss-Prot
  Q811L5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-10-06 Sec16a  SEC16 homolog A, endoplasmic reticulum export factor    SEC16 homolog A (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED