9230112D13Rik (RIKEN cDNA 9230112D13 gene) - Rat Genome Database

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Gene: 9230112D13Rik (RIKEN cDNA 9230112D13 gene) Mus musculus
Analyze
Symbol: 9230112D13Rik
Name: RIKEN cDNA 9230112D13 gene
RGD ID: 1622207
MGI Page MGI
Description:
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC78243; uncharacterized protein LOC78243
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391434,233,578 - 34,244,758 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1434,233,578 - 34,244,758 (-)EnsemblGRCm39 Ensembl
GRCm381434,511,621 - 34,522,801 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1434,511,621 - 34,522,801 (-)EnsemblGRCm38mm10GRCm38
MGSCv371435,324,807 - 35,335,981 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361433,340,711 - 33,351,893 (-)NCBIMGSCv36mm8
Celera1430,777,061 - 30,788,236 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1420.82NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:21677750  


Genomics

Variants

.
Variants in 9230112D13Rik
413 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:77
Interacting mature miRNAs:77
Transcripts:ENSMUST00000022325
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301991Wta3_mweight adult 3 (mouse)Not determined14388747337887650Mouse
4141550Dbm3_mdiabetes modifier 3 (mouse)Not determined514347339143596Mouse
4141864Mrdq4_mmodifier of retinal degeneration QTL 4 (mouse)Not determined992324548765082Mouse
1300779Dyscalc4_mdystrophic cardiac calcinosis 4 (mouse)Not determined141221287146213007Mouse
27226748Femd8_mfemur midshaft diameter 8, 10 week (mouse)141376927346737457Mouse
27226752Femd4_mfemur midshaft diameter 4, 5 week (mouse)141376927347237457Mouse
1300544Hypn_mhyperinsulinemia (mouse)Not determined141516061649160765Mouse
1301372Sluc13_msusceptibility to lung cancer 13 (mouse)Not determined141882760452827726Mouse
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
27226775Tibl7_mtibia length 7, 5 week (mouse)143032195748837457Mouse
27226744Metcl6_mmetatarsal-calcaneal length 6, 5 week (mouse)143032195752937457Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
14696688Rfq2_mrearing frequency QTL 2, males (mouse)143372195735721957Mouse
27226727Tibl21_mtibia length 21, 16 week (mouse)143412195752937457Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000022325   ⟹   ENSMUSP00000022325
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1434,233,578 - 34,244,758 (-)Ensembl
GRCm38.p6 Ensembl1434,511,621 - 34,522,801 (-)Ensembl
RefSeq Acc Id: NM_030062   ⟹   NP_084338
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391434,233,578 - 34,244,758 (-)NCBI
GRCm381434,511,621 - 34,522,801 (-)ENTREZGENE
Celera1430,777,061 - 30,788,242 (-)ENTREZGENE
cM Map14 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_084338 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAB32075 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000022325
  ENSMUSP00000022325.2
Reference Protein Sequences
RefSeq Acc Id: NP_084338   ⟸   NM_030062
- UniProtKB: Q9D260 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000022325   ⟸   ENSMUST00000022325

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D260-F1-model_v2 AlphaFold Q9D260 1-137 view protein structure


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000021797 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000022325 ENTREZGENE
  ENSMUST00000022325.3 UniProtKB/TrEMBL
KEGG Report mmu:78243 UniProtKB/TrEMBL
MGD MGI:1925493 ENTREZGENE
NCBI Gene 78243 ENTREZGENE
PhenoGen 9230112D13Rik PhenoGen
UniProt Q9D260 ENTREZGENE, UniProtKB/TrEMBL