Rbm47 (RNA binding motif protein 47) - Rat Genome Database

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Gene: Rbm47 (RNA binding motif protein 47) Mus musculus
Analyze
Symbol: Rbm47
Name: RNA binding motif protein 47
RGD ID: 1622022
MGI Page MGI
Description: Enables enzyme-substrate adaptor activity and mRNA 3'-UTR binding activity. Involved in 3'-UTR-mediated mRNA stabilization; cytidine to uridine editing; and positive regulation of interleukin-10 production. Acts upstream of or within hematopoietic progenitor cell differentiation. Located in nucleus. Is expressed in several structures, including brain ventricle and choroid plexus; genitourinary system; gut; sensory organ; and yolk sac. Orthologous to human RBM47 (RNA binding motif protein 47).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 9530077J19Rik; MGC18900; RNA-binding motif protein 47; RNA-binding protein 47
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39566,173,892 - 66,309,297 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl566,173,892 - 66,330,461 (-)EnsemblGRCm39 Ensembl
GRCm38566,016,549 - 66,151,954 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl566,016,549 - 66,173,118 (-)EnsemblGRCm38mm10GRCm38
MGSCv37566,407,796 - 66,543,163 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36566,297,781 - 66,430,064 (-)NCBIMGSCv36mm8
Celera563,312,440 - 63,447,008 (-)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map533.93NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
1,2-dimethylhydrazine  (EXP)
14-Deoxy-11,12-didehydroandrographolide  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
3',5'-cyclic UMP  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
acetamide  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amphetamine  (ISO)
amphotericin B  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dibenz[a,h]anthracene  (EXP)
dibutyl phthalate  (ISO)
dorsomorphin  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
epoxiconazole  (EXP)
finasteride  (ISO)
folic acid  (EXP)
fulvestrant  (ISO)
gentamycin  (ISO)
hydrogen peroxide  (ISO)
isotretinoin  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
lidocaine  (ISO)
mercury dibromide  (ISO)
methapyrilene  (ISO)
methoxychlor  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
oxaliplatin  (ISO)
ozone  (EXP,ISO)
p-chloromercuribenzoic acid  (ISO)
p-toluidine  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
perfluorohexanesulfonic acid  (EXP)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (EXP)
sulforaphane  (ISO)
sulindac  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
trichloroethene  (ISO)
triclosan  (ISO)
triptonide  (EXP)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:16033648   PMID:16141072  
PMID:16141073   PMID:17967808   PMID:18799693   PMID:21267068   PMID:21677750   PMID:21873635   PMID:23649762   PMID:24029230   PMID:24916387   PMID:26789794   PMID:29844590   PMID:30309881  
PMID:30844405   PMID:30973865   PMID:34133714   PMID:34499322   PMID:35986129   PMID:37014710   PMID:38355793  


Genomics

Comparative Map Data
Rbm47
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39566,173,892 - 66,309,297 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl566,173,892 - 66,330,461 (-)EnsemblGRCm39 Ensembl
GRCm38566,016,549 - 66,151,954 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl566,016,549 - 66,173,118 (-)EnsemblGRCm38mm10GRCm38
MGSCv37566,407,796 - 66,543,163 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36566,297,781 - 66,430,064 (-)NCBIMGSCv36mm8
Celera563,312,440 - 63,447,008 (-)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map533.93NCBI
RBM47
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38440,423,280 - 40,630,852 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl440,423,267 - 40,630,875 (-)EnsemblGRCh38hg38GRCh38
GRCh37440,425,297 - 40,632,611 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36440,120,029 - 40,326,640 (-)NCBINCBI36Build 36hg18NCBI36
Celera440,866,838 - 41,073,114 (-)NCBICelera
Cytogenetic Map4p14NCBI
HuRef439,747,457 - 39,953,324 (-)NCBIHuRef
CHM1_1440,424,401 - 40,631,064 (-)NCBICHM1_1
T2T-CHM13v2.0440,396,950 - 40,605,120 (-)NCBIT2T-CHM13v2.0
Rbm47
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81442,407,226 - 42,545,304 (+)NCBIGRCr8
mRatBN7.21442,053,290 - 42,191,572 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1442,154,142 - 42,189,431 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1442,514,499 - 42,543,307 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01443,814,591 - 43,843,398 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01442,295,818 - 42,323,172 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01443,701,944 - 43,839,803 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1443,810,119 - 43,837,662 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01443,490,935 - 43,627,254 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41444,815,888 - 44,846,231 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11444,818,278 - 44,848,605 (+)NCBI
Celera1441,314,346 - 41,342,080 (+)NCBICelera
Cytogenetic Map14p11NCBI
Rbm47
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554436,940,523 - 7,100,130 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554436,940,523 - 7,100,130 (+)NCBIChiLan1.0ChiLan1.0
RBM47
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2340,605,279 - 40,812,111 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1440,797,090 - 41,004,002 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0434,744,484 - 34,951,402 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1440,597,366 - 40,803,668 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl440,597,366 - 40,640,599 (-)Ensemblpanpan1.1panPan2
RBM47
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1371,985,725 - 72,135,271 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl371,985,831 - 72,132,918 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha374,615,005 - 74,681,834 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0372,747,818 - 72,901,974 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl372,748,064 - 72,899,613 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1372,095,780 - 72,162,586 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0372,252,246 - 72,318,989 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0372,636,184 - 72,703,169 (+)NCBIUU_Cfam_GSD_1.0
Rbm47
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528538,280,540 - 38,445,895 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364827,852,327 - 8,016,819 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364827,852,346 - 8,016,612 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBM47
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl831,508,148 - 31,690,409 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1831,508,133 - 31,690,757 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2833,174,223 - 33,190,577 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBM47
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1279,683,026 - 9,888,245 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl279,873,138 - 9,888,239 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604756,049,090 - 56,251,620 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbm47
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476126,513,759 - 26,588,950 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476126,429,130 - 26,588,563 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rbm47
4831 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2694
Count of miRNA genes:725
Interacting mature miRNAs:905
Transcripts:ENSMUST00000094756, ENSMUST00000094757, ENSMUST00000113724, ENSMUST00000113725, ENSMUST00000113726, ENSMUST00000122855, ENSMUST00000127275, ENSMUST00000131838, ENSMUST00000132606, ENSMUST00000136402, ENSMUST00000145625, ENSMUST00000167950
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined32133234100777931Mouse
10043995Hbnr9_mHeligmosomoides bakeri nematode resistance 9 (mouse)Not determined53348866767488876Mouse
1301845Lxw4_mlupus BXSB x NZW 4 (mouse)Not determined53569446269694594Mouse
11049561Lmr24e_mleishmaniasis resistance 24e (mouse)53569446269694594Mouse
11049559Lmr24c_mleishmaniasis resistance 24c (mouse)53569446269694594Mouse
11049558Lmr24b_mleishmaniasis resistance 24b (mouse)53569446269694594Mouse
1301223Hdlq7_mHDL QTL 7 (mouse)Not determined53585456869854714Mouse
13464252Ahl10_mage related hearing loss, early onset 10 (mouse)53585456869854714Mouse
4141647Hrvhf1_mheart rate variability, high frequency 1 (mouse)Not determined3643342370433423Mouse
1301170Lith13_mlithogenic gene 13 (mouse)Not determined53649448670494598Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
13464246Ahl11_mage related hearing loss, early onset 11 (mouse)53764377771643896Mouse
1300951Gbvq1_mgallstone bladder volume QTL 1 (mouse)Not determined53811168172111798Mouse
13464245Ahl12_mage related hearing loss, early onset 12 (mouse)53811168172111798Mouse
1301698Pcfm4_mperiosteal circumference and femur length 4 (mouse)Not determined54458584378585965Mouse
13207584Mwmlpt4_mMorris water maze latency to platform, training, 4 (mouse)54632260680322606Mouse
13207588Mwmlpa4_mMorris water maze latency to platform, all, 4 (mouse)54632260680322606Mouse
14746981Manh57_mmandible shape 57 (mouse)54716974281169742Mouse
11041665Lmr24_mleishmaniasis resistance 24 (mouse)552694462107321041Mouse
11041899Lmr24a_mleishmaniasis resistance 24a (mouse)552694462107321041Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
1301243Bmd2_mbone mineral density 2 (mouse)Not determined555388334100455525Mouse
4142317Rgcs1_mretinal ganglion cell susceptible 1 (mouse)Not determined55388334108762627Mouse
13464248Ahl13_mage related hearing loss, early onset 13 (mouse)55564587489645995Mouse
10043962Obq27_mobesity QTL 27 (mouse)Not determined55628565590285655Mouse
10044005Ahl7_mage related hearing loss 7 (mouse)Not determined55833050292330641Mouse
11040591Lmr3c_mleishmaniasis resistance 3c (mouse)55960280193602980Mouse
11040592Lmr3d_mleishmaniasis resistance 3d (mouse)55960280193602980Mouse
11040589Lmr3a_mleishmaniasis resistance 3a (mouse)55960280193602980Mouse
11040590Lmr3b_mleishmaniasis resistance 3b (mouse)55960280193602980Mouse
1301843Listr1_mlisteriosis resistance 1 (mouse)Not determined56024608194246203Mouse
13464247Ahl14_mage related hearing loss, early onset 14 (mouse)56040306294403160Mouse
11252124Modvl6_mmodifier of vacuolated lens 6 (mouse)56265056896650688Mouse
4142428Modvl1_mmodifier of vacuolated lens 1 (mouse)Not determined6265056896650688Mouse
1301010ahl2_mage related hearing loss 2 (mouse)Not determined56265056896650688Mouse
13464250Ahl15_mage related hearing loss, early onset 15 (mouse)56265056896650688Mouse
10045972Tir5_mtrypanosome infection response 5 (mouse)Not determined563705442104387065Mouse
11049560Lmr24d_mleishmaniasis resistance 24d (mouse)56437487798374996Mouse

Markers in Region
G67077  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38566,136,430 - 66,136,978UniSTSGRCm38
MGSCv37566,527,669 - 66,528,217UniSTSGRCm37
Celera563,431,588 - 63,432,136UniSTS
Cytogenetic Map5C3.1UniSTS
BC013481  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38566,026,212 - 66,026,751UniSTSGRCm38
MGSCv37566,417,451 - 66,417,990UniSTSGRCm37
Celera563,322,077 - 63,322,616UniSTS
Cytogenetic Map5C3.1UniSTS
cM Map5 UniSTS
D5Mit258  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38566,042,304 - 66,042,428UniSTSGRCm38
MGSCv37566,433,543 - 66,433,667UniSTSGRCm37
Celera563,338,652 - 63,338,774UniSTS
Cytogenetic Map5C3.1UniSTS
cM Map541.0UniSTS
Whitehead Genetic527.3UniSTS
Whitehead_YAC5 UniSTS
RH125595  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38566,092,082 - 66,092,178UniSTSGRCm38
MGSCv37566,483,321 - 66,483,417UniSTSGRCm37
Celera563,388,413 - 63,388,509UniSTS
Cytogenetic Map5C3.1UniSTS
RH126107  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38566,080,244 - 66,080,473UniSTSGRCm38
MGSCv37566,471,483 - 66,471,712UniSTSGRCm37
Celera563,376,624 - 63,376,853UniSTS
Cytogenetic Map5C3.1UniSTS
cM Map539.0UniSTS
Whitehead/MRC_RH5962.94UniSTS
RH126336  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38566,096,020 - 66,096,229UniSTSGRCm38
MGSCv37566,487,259 - 66,487,468UniSTSGRCm37
Celera563,392,315 - 63,392,524UniSTS
Cytogenetic Map5C3.1UniSTS
cM Map539.0UniSTS
Whitehead/MRC_RH5956.29UniSTS
D5Ertd700e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38566,025,550 - 66,025,792UniSTSGRCm38
MGSCv37566,416,789 - 66,417,031UniSTSGRCm37
Celera563,321,415 - 63,321,657UniSTS
Cytogenetic Map5C3.1UniSTS
cM Map539.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001127382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_139065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_178446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006503956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006503962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC115293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC132284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC163642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC037372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC112902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE626286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY315501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY380934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY551709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ210661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ229698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000094756   ⟹   ENSMUSP00000092348
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl566,175,945 - 66,308,421 (-)Ensembl
GRCm38.p6 Ensembl566,018,602 - 66,151,078 (-)Ensembl
RefSeq Acc Id: ENSMUST00000094757   ⟹   ENSMUSP00000092349
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl566,173,899 - 66,238,343 (-)Ensembl
GRCm38.p6 Ensembl566,016,556 - 66,081,000 (-)Ensembl
RefSeq Acc Id: ENSMUST00000113724   ⟹   ENSMUSP00000109353
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl566,176,328 - 66,238,442 (-)Ensembl
GRCm38.p6 Ensembl566,018,985 - 66,081,099 (-)Ensembl
RefSeq Acc Id: ENSMUST00000113726   ⟹   ENSMUSP00000109355
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl566,173,892 - 66,255,534 (-)Ensembl
GRCm38.p6 Ensembl566,016,549 - 66,098,191 (-)Ensembl
RefSeq Acc Id: ENSMUST00000167950   ⟹   ENSMUSP00000128016
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl566,173,900 - 66,309,267 (-)Ensembl
GRCm38.p6 Ensembl566,016,557 - 66,151,924 (-)Ensembl
RefSeq Acc Id: ENSMUST00000200775   ⟹   ENSMUSP00000144325
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl566,175,945 - 66,308,421 (-)Ensembl
GRCm38.p6 Ensembl566,018,602 - 66,151,078 (-)Ensembl
RefSeq Acc Id: ENSMUST00000200852   ⟹   ENSMUSP00000144505
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl566,184,128 - 66,211,895 (-)Ensembl
GRCm38.p6 Ensembl566,026,785 - 66,054,552 (-)Ensembl
RefSeq Acc Id: ENSMUST00000201311
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl566,184,371 - 66,239,333 (-)Ensembl
GRCm38.p6 Ensembl566,027,028 - 66,081,990 (-)Ensembl
RefSeq Acc Id: ENSMUST00000201544   ⟹   ENSMUSP00000144122
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl566,173,892 - 66,330,461 (-)Ensembl
GRCm38.p6 Ensembl566,016,549 - 66,173,118 (-)Ensembl
RefSeq Acc Id: ENSMUST00000201561   ⟹   ENSMUSP00000144112
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl566,184,583 - 66,308,666 (-)Ensembl
GRCm38.p6 Ensembl566,027,240 - 66,151,323 (-)Ensembl
RefSeq Acc Id: ENSMUST00000201605
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl566,203,437 - 66,309,131 (-)Ensembl
GRCm38.p6 Ensembl566,046,094 - 66,151,788 (-)Ensembl
RefSeq Acc Id: ENSMUST00000201670
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl566,203,552 - 66,309,125 (-)Ensembl
GRCm38.p6 Ensembl566,046,209 - 66,151,782 (-)Ensembl
RefSeq Acc Id: ENSMUST00000202700   ⟹   ENSMUSP00000144287
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl566,184,563 - 66,238,327 (-)Ensembl
GRCm38.p6 Ensembl566,027,220 - 66,080,984 (-)Ensembl
RefSeq Acc Id: ENSMUST00000202794
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl566,182,885 - 66,308,299 (-)Ensembl
GRCm38.p6 Ensembl566,025,542 - 66,150,956 (-)Ensembl
RefSeq Acc Id: NM_001127382   ⟹   NP_001120854
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39566,173,892 - 66,309,297 (-)NCBI
GRCm38566,016,549 - 66,151,954 (-)NCBI
MGSCv37566,407,796 - 66,543,163 (-)RGD
Celera563,312,432 - 63,447,038 (-)NCBI
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001291226   ⟹   NP_001278155
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39566,173,892 - 66,308,321 (-)NCBI
GRCm38566,016,549 - 66,150,978 (-)NCBI
Celera563,312,432 - 63,447,038 (-)NCBI
Sequence:
RefSeq Acc Id: NM_139065   ⟹   NP_620704
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39566,173,892 - 66,255,522 (-)NCBI
GRCm38566,016,549 - 66,098,179 (-)NCBI
MGSCv37566,407,796 - 66,543,163 (-)RGD
Celera563,312,432 - 63,447,038 (-)NCBI
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_178446   ⟹   NP_848541
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39566,173,892 - 66,308,321 (-)NCBI
GRCm38566,016,549 - 66,150,978 (-)NCBI
MGSCv37566,407,796 - 66,543,163 (-)RGD
Celera563,312,432 - 63,447,038 (-)NCBI
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006503956   ⟹   XP_006504019
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39566,173,898 - 66,238,379 (-)NCBI
GRCm38566,016,555 - 66,081,036 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006503962   ⟹   XP_006504025
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39566,173,898 - 66,309,292 (-)NCBI
GRCm38566,016,555 - 66,151,949 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254507   ⟹   XP_030110367
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39566,173,897 - 66,309,203 (-)NCBI
GRCm38566,016,554 - 66,151,860 (-)NCBI
Sequence:
RefSeq Acc Id: NP_848541   ⟸   NM_178446
- Peptide Label: isoform a
- UniProtKB: Q3UQC7 (UniProtKB/Swiss-Prot),   Q8BZE8 (UniProtKB/Swiss-Prot),   Q91WT8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_620704   ⟸   NM_139065
- Peptide Label: isoform a
- UniProtKB: Q3UQC7 (UniProtKB/Swiss-Prot),   Q8BZE8 (UniProtKB/Swiss-Prot),   Q91WT8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001120854   ⟸   NM_001127382
- Peptide Label: isoform a
- UniProtKB: Q3UQC7 (UniProtKB/Swiss-Prot),   Q8BZE8 (UniProtKB/Swiss-Prot),   Q91WT8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006504025   ⟸   XM_006503962
- Peptide Label: isoform X2
- UniProtKB: D3YXZ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504019   ⟸   XM_006503956
- Peptide Label: isoform X1
- UniProtKB: Q3UQC7 (UniProtKB/Swiss-Prot),   Q8BZE8 (UniProtKB/Swiss-Prot),   Q91WT8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001278155   ⟸   NM_001291226
- Peptide Label: isoform b
- UniProtKB: D3YXZ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030110367   ⟸   XM_030254507
- Peptide Label: isoform X1
- UniProtKB: Q91WT8 (UniProtKB/Swiss-Prot),   Q3UQC7 (UniProtKB/Swiss-Prot),   Q8BZE8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000144287   ⟸   ENSMUST00000202700
RefSeq Acc Id: ENSMUSP00000109355   ⟸   ENSMUST00000113726
RefSeq Acc Id: ENSMUSP00000109353   ⟸   ENSMUST00000113724
RefSeq Acc Id: ENSMUSP00000128016   ⟸   ENSMUST00000167950
RefSeq Acc Id: ENSMUSP00000092348   ⟸   ENSMUST00000094756
RefSeq Acc Id: ENSMUSP00000092349   ⟸   ENSMUST00000094757
RefSeq Acc Id: ENSMUSP00000144112   ⟸   ENSMUST00000201561
RefSeq Acc Id: ENSMUSP00000144122   ⟸   ENSMUST00000201544
RefSeq Acc Id: ENSMUSP00000144505   ⟸   ENSMUST00000200852
RefSeq Acc Id: ENSMUSP00000144325   ⟸   ENSMUST00000200775
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q91WT8-F1-model_v2 AlphaFold Q91WT8 1-590 view protein structure

Promoters
RGD ID:6886796
Promoter ID:EPDNEW_M6849
Type:multiple initiation site
Name:Rbm47_1
Description:Mus musculus RNA binding motif protein 47 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M6850  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38566,150,927 - 66,150,987EPDNEW
RGD ID:6886798
Promoter ID:EPDNEW_M6850
Type:multiple initiation site
Name:Rbm47_2
Description:Mus musculus RNA binding motif protein 47 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M6849  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38566,151,674 - 66,151,734EPDNEW
RGD ID:6849184
Promoter ID:MM_XEF:5443
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Kidney
Transcripts:NM_001142027
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36566,417,584 - 66,418,084 (-)MPROMDB
RGD ID:6838201
Promoter ID:MM_KWN:42415
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   Kidney,   Liver
Transcripts:OTTMUST00000052915
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36566,445,519 - 66,446,019 (-)MPROMDB
RGD ID:6838199
Promoter ID:MM_KWN:42418
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   Liver,   Lung
Transcripts:ENSMUST00000113724,   OTTMUST00000052907
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36566,472,181 - 66,473,007 (-)MPROMDB
RGD ID:6838200
Promoter ID:MM_KWN:42419
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   Kidney,   Liver
Transcripts:ENSMUST00000094756
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36566,488,986 - 66,489,607 (-)MPROMDB
RGD ID:6838203
Promoter ID:MM_KWN:42420
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Liver,   Lung
Transcripts:NM_001127382,   OTTMUST00000052908,   OTTMUST00000052911,   OTTMUST00000052912,   OTTMUST00000052913,   OTTMUST00000052914,   UC008XON.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36566,542,071 - 66,542,837 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2384294 AgrOrtholog
Ensembl Genes ENSMUSG00000070780 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000094756 ENTREZGENE
  ENSMUST00000094756.11 UniProtKB/TrEMBL
  ENSMUST00000094757 ENTREZGENE
  ENSMUST00000094757.9 UniProtKB/Swiss-Prot
  ENSMUST00000113724.6 UniProtKB/Swiss-Prot
  ENSMUST00000113726 ENTREZGENE
  ENSMUST00000113726.8 UniProtKB/Swiss-Prot
  ENSMUST00000167950 ENTREZGENE
  ENSMUST00000167950.8 UniProtKB/Swiss-Prot
  ENSMUST00000200775 ENTREZGENE
  ENSMUST00000200775.4 UniProtKB/Swiss-Prot
  ENSMUST00000200852.4 UniProtKB/TrEMBL
  ENSMUST00000201544.4 UniProtKB/Swiss-Prot
  ENSMUST00000202700.4 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro HnRNP_R/Q_splicing_fac UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBM47_RRM1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBM47_RRM2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBM47_RRM3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:245945 UniProtKB/Swiss-Prot
MGD MGI:2384294 ENTREZGENE
NCBI Gene 245945 ENTREZGENE
PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR21245:SF6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rbm47 PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3YXZ5 ENTREZGENE, UniProtKB/TrEMBL
  D3Z113_MOUSE UniProtKB/TrEMBL
  D3Z5E3_MOUSE UniProtKB/TrEMBL
  Q3UQC7 ENTREZGENE
  Q8BZE8 ENTREZGENE
  Q91WT8 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3UQC7 UniProtKB/Swiss-Prot
  Q8BZE8 UniProtKB/Swiss-Prot