Gm5622 (predicted gene 5622) - Rat Genome Database

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Gene: Gm5622 (predicted gene 5622) Mus musculus
Analyze
Symbol: Gm5622
Name: predicted gene 5622
RGD ID: 1621874
MGI Page MGI
Description:
Type: protein-coding
RefSeq Status: PREDICTED
Previously known as: EG434459; hypothetical protein LOC434459; uncharacterized protein LOC434459
Related Pseudogenes: Gm8065  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391451,790,247 - 51,900,410 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1451,790,247 - 51,900,410 (+)EnsemblGRCm39 Ensembl
GRCm381451,552,790 - 51,662,953 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1451,552,790 - 51,662,953 (+)EnsemblGRCm38mm10GRCm38
MGSCv371452,172,465 - 52,282,628 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361450,474,741 - 50,584,904 (+)NCBIMGSCv36mm8
Celera1447,859,124 - 47,859,477 (+)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1426.57NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Variants

.
Variants in Gm5622
3936 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:167
Count of miRNA genes:149
Interacting mature miRNAs:157
Transcripts:ENSMUST00000096170
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301372Sluc13_msusceptibility to lung cancer 13 (mouse)Not determined141882760452827726Mouse
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
27226744Metcl6_mmetatarsal-calcaneal length 6, 5 week (mouse)143032195752937457Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
27226727Tibl21_mtibia length 21, 16 week (mouse)143412195752937457Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
4141484Hcbip1_mhexachlorobenzene induced porphyria 1 (mouse)Not determined4733525059962593Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
4142310Carg1_mCandida albicans resistance gene 1 (mouse)Not determined5138245954461655Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000096170   ⟹   ENSMUSP00000093884
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1451,790,247 - 51,900,410 (+)Ensembl
GRCm38.p6 Ensembl1451,552,790 - 51,662,953 (+)Ensembl
RefSeq Acc Id: NM_001013816   ⟹   NP_001013838
RefSeq Status: PREDICTED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391451,790,247 - 51,900,410 (+)NCBI
GRCm381451,552,790 - 51,662,953 (+)NCBI
MGSCv371452,172,465 - 52,282,628 (+)RGD
Celera1447,859,124 - 47,859,477 (+)RGD
cM Map14 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001013838 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH49649 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000093884
  ENSMUSP00000093884.5
Reference Protein Sequences
RefSeq Acc Id: NP_001013838   ⟸   NM_001013816
- UniProtKB: Q810Q0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000093884   ⟸   ENSMUST00000096170
Protein Domains
Disks large homolog 5 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q810Q0-F1-model_v2 AlphaFold Q810Q0 1-167 view protein structure

Promoters
RGD ID:8682160
Promoter ID:EPDNEW_M19111
Type:single initiation site
Name:Gm5622_1
Description:Mus musculus predicted gene 5622 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381451,552,828 - 51,552,888EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000079244 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000096170 ENTREZGENE
  ENSMUST00000096170.5 UniProtKB/TrEMBL
InterPro DUF622 UniProtKB/TrEMBL
KEGG Report mmu:434459 UniProtKB/TrEMBL
MGD MGI:3646060 ENTREZGENE
NCBI Gene 434459 ENTREZGENE
PANTHER 2610042L04RIK PROTEIN-RELATED UniProtKB/TrEMBL
  SPEER/SPETEX UniProtKB/TrEMBL
Pfam DUF622 UniProtKB/TrEMBL
PhenoGen Gm5622 PhenoGen
UniProt Q810Q0 ENTREZGENE, UniProtKB/TrEMBL