Vmn2r48 (vomeronasal 2, receptor 48) - Rat Genome Database

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Gene: Vmn2r48 (vomeronasal 2, receptor 48) Mus musculus
Analyze
No known orthologs.
Symbol: Vmn2r48
Name: vomeronasal 2, receptor 48
RGD ID: 1621809
MGI Page MGI
Description: Predicted to enable G protein-coupled receptor activity. Predicted to be active in plasma membrane.
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: EG625580; vomeronasal receptor Vmn2r48
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3979,661,551 - 9,687,512 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl79,661,551 - 9,687,512 (-)EnsemblGRCm39 Ensembl
GRCm3879,927,624 - 9,953,585 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl79,927,624 - 9,953,585 (-)EnsemblGRCm38mm10GRCm38
MGSCv37710,512,973 - 10,538,934 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3678,802,517 - 8,828,502 (-)NCBIMGSCv36mm8
Cytogenetic Map7A1NCBI
cM Map76.14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:17382427   PMID:21873635  


Genomics

Variants

.
Variants in Vmn2r48
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:33
Count of miRNA genes:33
Interacting mature miRNAs:33
Transcripts:ENSMUST00000165611
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301177Vent3_mventricular size 3 (mouse)Not determined7120511925Mouse
10054067Sle20_msystematic lupus erythematosus susceptibility 20 (mouse)Not determined7120511925Mouse
1302188Lxw6_mlupus BXSB x NZW 6 (mouse)Not determined7121698146Mouse
12904941Edlmmq6_mextensor digitorum longus muscle mass QTL 6 (mouse)7121821047Mouse
12904948Tammq5_mtibialis anterior muscle mass QTL 5 (mouse)7121821047Mouse
12904953Gmmq5_mgastrocnemius muscle mass QTL 5 (mouse)7121821047Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1302115Abhr3_mallergen-induced bronchial hyperresponsiveness 3 (mouse)Not determined7331599616637423Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7335204824879418Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25394569Skmw57_mskeletal muscle weight 57, gastroc (mouse)7458046916687861Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000165611   ⟹   ENSMUSP00000130631
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl79,661,551 - 9,687,512 (-)Ensembl
GRCm38.p6 Ensembl79,927,624 - 9,953,585 (-)Ensembl
RefSeq Acc Id: NM_001105152   ⟹   NP_001098622
RefSeq Status: INFERRED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3979,661,551 - 9,687,512 (-)NCBI
GRCm3879,927,624 - 9,953,585 (-)ENTREZGENE
MGSCv37710,512,973 - 10,538,934 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017322435   ⟹   XP_017177924
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3979,661,551 - 9,687,503 (-)NCBI
GRCm3879,927,624 - 9,953,576 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001098622 (Get FASTA)   NCBI Sequence Viewer  
  XP_017177924 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000130631
  ENSMUSP00000130631.2
RefSeq Acc Id: NP_001098622   ⟸   NM_001105152
- UniProtKB: E9Q5D8 (UniProtKB/TrEMBL),   O35202 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017177924   ⟸   XM_017322435
- Peptide Label: isoform X1
- UniProtKB: O35202 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000130631   ⟸   ENSMUST00000165611
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9Q5D8-F1-model_v2 AlphaFold E9Q5D8 1-855 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3647749 AgrOrtholog
Ensembl Genes ENSMUSG00000095914 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000165611 ENTREZGENE
  ENSMUST00000165611.2 UniProtKB/TrEMBL
Gene3D-CATH 2.10.50.30 UniProtKB/TrEMBL
  3.40.50.2300 UniProtKB/TrEMBL
InterPro ANF_lig-bd_rcpt UniProtKB/TrEMBL
  GPCR_3 UniProtKB/TrEMBL
  GPCR_3_9-Cys_dom UniProtKB/TrEMBL
  GPCR_3_9-Cys_sf UniProtKB/TrEMBL
  GPCR_3_C UniProtKB/TrEMBL
  GPCR_3_Ca_sens_rcpt-rel UniProtKB/TrEMBL
  GPCR_3_vmron_rcpt_2 UniProtKB/TrEMBL
  Peripla_BP_I UniProtKB/TrEMBL
KEGG Report mmu:625580 UniProtKB/TrEMBL
MGD MGI:3647749 ENTREZGENE
NCBI Gene 625580 ENTREZGENE
PANTHER PTHR24061 UniProtKB/TrEMBL
  VOMERONASAL 2, RECEPTOR 29-RELATED UniProtKB/TrEMBL
Pfam 7tm_3 UniProtKB/TrEMBL
  ANF_receptor UniProtKB/TrEMBL
  NCD3G UniProtKB/TrEMBL
PhenoGen Vmn2r48 PhenoGen
PRINTS GPCRMGR UniProtKB/TrEMBL
  VOMERONASL2R UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F3_4 UniProtKB/TrEMBL
Superfamily-SCOP SSF53822 UniProtKB/TrEMBL
UniProt E9Q5D8 ENTREZGENE, UniProtKB/TrEMBL
  O35202 ENTREZGENE