Zscan4e (zinc finger and SCAN domain containing 4E) - Rat Genome Database

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Gene: Zscan4e (zinc finger and SCAN domain containing 4E) Mus musculus
Analyze
No known orthologs.
Symbol: Zscan4e
Name: zinc finger and SCAN domain containing 4E
RGD ID: 1621740
MGI Page MGI
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human ZSCAN4 (zinc finger and SCAN domain containing 4).
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: EG665848
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39711,040,296 - 11,044,609 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl711,039,241 - 11,044,609 (-)EnsemblGRCm39 Ensembl
GRCm38711,306,369 - 11,310,682 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl711,306,378 - 11,310,682 (-)EnsemblGRCm38mm10GRCm38
MGSCv37711,891,727 - 11,896,031 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36710,181,319 - 10,185,564 (-)NCBIMGSCv36mm8
Cytogenetic Map7A1NCBI
cM Map76.94NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
triptonide  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17553482   PMID:20336070   PMID:21873635   PMID:27681430  


Genomics

Variants

.
Variants in Zscan4e
93 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:123
Count of miRNA genes:121
Interacting mature miRNAs:121
Transcripts:ENSMUST00000166753
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301177Vent3_mventricular size 3 (mouse)Not determined7120511925Mouse
10054067Sle20_msystematic lupus erythematosus susceptibility 20 (mouse)Not determined7120511925Mouse
1302188Lxw6_mlupus BXSB x NZW 6 (mouse)Not determined7121698146Mouse
12904941Edlmmq6_mextensor digitorum longus muscle mass QTL 6 (mouse)7121821047Mouse
12904948Tammq5_mtibialis anterior muscle mass QTL 5 (mouse)7121821047Mouse
12904953Gmmq5_mgastrocnemius muscle mass QTL 5 (mouse)7121821047Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1302115Abhr3_mallergen-induced bronchial hyperresponsiveness 3 (mouse)Not determined7331599616637423Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7335204824879418Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25394569Skmw57_mskeletal muscle weight 57, gastroc (mouse)7458046916687861Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1357699Nhdlq6_mnon-HDL QTL 6 (mouse)Not determined7998886743988984Mouse
1558893Spir1_mStreptococcus pneumoniae infection resistance 1 (mouse)Not determined71030579844305936Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000166753   ⟹   ENSMUSP00000147491
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl711,039,241 - 11,044,586 (-)Ensembl
GRCm38.p6 Ensembl711,306,426 - 11,310,659 (-)Ensembl
RefSeq Acc Id: ENSMUST00000210521   ⟹   ENSMUSP00000147356
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl711,040,305 - 11,044,609 (-)Ensembl
GRCm38.p6 Ensembl711,306,378 - 11,310,682 (-)Ensembl
RefSeq Acc Id: ENSMUST00000249317   ⟹   ENSMUSP00000159691
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl711,039,241 - 11,044,609 (-)Ensembl
RefSeq Acc Id: ENSMUST00000249318
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl711,039,245 - 11,044,607 (-)Ensembl
RefSeq Acc Id: NM_001161802   ⟹   NP_001155274
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38711,306,352 - 11,310,685 (-)NCBI
MGSCv37711,891,727 - 11,896,031 (-)RGD
cM Map7 ENTREZGENE
RefSeq Acc Id: XM_006540292   ⟹   XP_006540355
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38711,306,352 - 11,310,685 (-)NCBI
Protein Sequences
Ensembl Protein ENSMUSP00000147491.2
  ENSMUSP00000159691.1
Reference Protein Sequences
RefSeq Acc Id: NP_001155274   ⟸   NM_001161802
RefSeq Acc Id: XP_006540355   ⟸   XM_006540292
RefSeq Acc Id: ENSMUSP00000147491   ⟸   ENSMUST00000166753
RefSeq Acc Id: ENSMUSP00000147356   ⟸   ENSMUST00000210521
RefSeq Acc Id: ENSMUSP00000159691   ⟸   ENSMUST00000249317
Protein Domains
C2H2-type   SCAN box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A1B0GRE8-F1-model_v2 AlphaFold A0A1B0GRE8 1-505 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3643613 AgrOrtholog
Ensembl Genes ENSMUSG00000095936 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000166753.5 UniProtKB/TrEMBL
  ENSMUST00000249317.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.4020.10 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro SCAN_dom UniProtKB/TrEMBL
  SCAN_sf UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
MGD MGI:3643613 ENTREZGENE
NCBI Gene 665848 ENTREZGENE
PANTHER ZINC FINGER AND SCAN DOMAIN-CONTAINING UniProtKB/TrEMBL
  ZINC FINGER AND SCAN DOMAIN-CONTAINING PROTEIN 4 UniProtKB/TrEMBL
Pfam SCAN UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PhenoGen Zscan4e PhenoGen
PROSITE SCAN_BOX UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART SCAN UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Retrovirus capsid dimerization domain-like UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A1B0GRE8_MOUSE UniProtKB/TrEMBL