Ackr1 (atypical chemokine receptor 1 (Duffy blood group)) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Ackr1 (atypical chemokine receptor 1 (Duffy blood group)) Mus musculus
Analyze
Symbol: Ackr1
Name: atypical chemokine receptor 1 (Duffy blood group)
RGD ID: 1621633
MGI Page MGI
Description: Predicted to enable C-C chemokine binding activity. Acts upstream of or within inflammatory response and regulation of chemokine production. Predicted to be located in endosome and membrane. Is expressed in several structures, including genitourinary system; hemolymphoid system; lung; nervous system; and sensory organ. Human ortholog(s) of this gene implicated in Plasmodium vivax malaria and malaria. Orthologous to human ACKR1 (atypical chemokine receptor 1 (Duffy blood group)).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AA162249; atypical chemokine receptor 1; CCBP; CCBP1; CD234; Da; Darc; Dfy; Duffy antigen receptor for chemokines; Duffy antigen/chemokine receptor; Duffy blood group, chemokine receptor; ESTM3; ESTM35; FY; glycoprotein D; GPD
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391173,159,457 - 173,161,079 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1173,159,453 - 173,161,317 (-)EnsemblGRCm39 Ensembl
GRCm381173,331,886 - 173,333,503 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1173,331,886 - 173,333,750 (-)EnsemblGRCm38mm10GRCm38
MGSCv371175,262,017 - 175,263,634 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361175,168,486 - 175,170,119 (-)NCBIMGSCv36mm8
Celera1176,180,941 - 176,182,560 (-)NCBICelera
Cytogenetic Map1H3NCBI
cM Map180.33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
endosome  (IEA)
membrane  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Duffy antigen / receptor for chemokines correlates with inflammatory reaction in rats with venous hypertension: implication for the pathogenesis of primary chronic venous disease. Huang W, etal., Vasa. 2014 Jan;43(1):47-54. doi: 10.1024/0301-1526/a000327.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9314499   PMID:10051400   PMID:10349636   PMID:10520743   PMID:10757794   PMID:10961863   PMID:11042159   PMID:11076861   PMID:11132158   PMID:11217851   PMID:11444905   PMID:11781390  
PMID:11929753   PMID:12466851   PMID:12477932   PMID:12646177   PMID:12697152   PMID:12734373   PMID:15226823   PMID:15278442   PMID:15489334   PMID:15597075   PMID:16026622   PMID:16386320  
PMID:16394268   PMID:16602821   PMID:16943797   PMID:17114483   PMID:17416748   PMID:17942909   PMID:17955335   PMID:18287559   PMID:18524950   PMID:18554416   PMID:19064726   PMID:19498001  
PMID:19499525   PMID:20061440   PMID:20643340   PMID:21267068   PMID:21873635   PMID:23283724   PMID:24146983   PMID:24625696   PMID:24997773   PMID:25858253   PMID:26467254   PMID:26996598  
PMID:27376530   PMID:28471517   PMID:28526034   PMID:28553950   PMID:29341885   PMID:29899689   PMID:29997285   PMID:30446388   PMID:30799265   PMID:31076525   PMID:33051210   PMID:34033752  
PMID:34321999   PMID:34524684   PMID:35803223  


Genomics

Comparative Map Data
Ackr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391173,159,457 - 173,161,079 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1173,159,453 - 173,161,317 (-)EnsemblGRCm39 Ensembl
GRCm381173,331,886 - 173,333,503 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1173,331,886 - 173,333,750 (-)EnsemblGRCm38mm10GRCm38
MGSCv371175,262,017 - 175,263,634 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361175,168,486 - 175,170,119 (-)NCBIMGSCv36mm8
Celera1176,180,941 - 176,182,560 (-)NCBICelera
Cytogenetic Map1H3NCBI
cM Map180.33NCBI
ACKR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381159,204,875 - 159,206,500 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1159,204,875 - 159,206,500 (+)EnsemblGRCh38hg38GRCh38
GRCh371159,174,665 - 159,176,290 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361157,441,134 - 157,442,914 (+)NCBINCBI36Build 36hg18NCBI36
Build 341155,987,582 - 155,989,361NCBI
Celera1132,244,749 - 132,246,528 (+)NCBICelera
Cytogenetic Map1q23.2NCBI
HuRef1130,530,942 - 130,533,428 (+)NCBIHuRef
CHM1_11160,569,233 - 160,571,720 (+)NCBICHM1_1
T2T-CHM13v2.01158,341,901 - 158,343,525 (+)NCBIT2T-CHM13v2.0
Ackr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81388,314,735 - 88,316,354 (-)NCBIGRCr8
mRatBN7.21385,782,396 - 85,784,015 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1385,782,398 - 85,783,983 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1388,280,493 - 88,282,115 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01389,680,769 - 89,682,391 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01386,865,497 - 86,867,119 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01391,827,310 - 91,828,875 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01396,341,756 - 96,345,047 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41389,534,621 - 89,536,179 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1385,386,251 - 85,389,650 (-)NCBICelera
Cytogenetic Map13q24NCBI
Ackr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546810,995,941 - 11,001,094 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546810,994,372 - 10,997,434 (+)NCBIChiLan1.0ChiLan1.0
ACKR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2190,648,921 - 90,652,222 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1190,386,157 - 90,389,458 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01134,554,406 - 134,557,386 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11138,352,086 - 138,354,733 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1138,352,086 - 138,354,733 (+)Ensemblpanpan1.1panPan2
ACKR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13822,762,584 - 22,765,330 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3822,758,013 - 22,763,958 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3822,775,538 - 22,777,427 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03822,886,250 - 22,888,134 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3822,886,254 - 22,887,680 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13822,650,929 - 22,652,810 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03823,186,096 - 23,187,980 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03823,616,605 - 23,618,488 (-)NCBIUU_Cfam_GSD_1.0
Ackr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050585,455,886 - 5,459,211 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367401,295,319 - 1,296,812 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367401,295,299 - 1,298,441 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACKR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl491,224,139 - 91,225,850 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1491,224,089 - 91,225,610 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2499,221,386 - 99,222,907 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACKR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1204,742,326 - 4,746,615 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660383,888,960 - 3,891,604 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ackr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247942,120,786 - 2,122,232 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247942,055,917 - 2,124,815 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ackr1
12 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:60
Count of miRNA genes:59
Interacting mature miRNAs:60
Transcripts:ENSMUST00000038227
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300777Chol10_mcholesterol 10 (mouse)Not determined9147875502181875616Mouse
10054490Opefa_mopen field activity (mouse)Not determined1153712853187712853Mouse
10412205Bbaa30_mB.burgdorferi-associated arthritis 30 (mouse)Not determined1169038741174456436Mouse
12880426V25Dq2_mvitamin D inactive form serum level QTL 2 (mouse)1172532197195154279Mouse
1301339Hdlq15_mHDL QTL 15 (mouse)Not determined1165873675195154279Mouse
1300696Bpq2_mblood pressure QTL 2 (mouse)Not determined1139602037173602216Mouse
10766456Sle21_msystematic lupus erythematosus susceptibility 21 (mouse)1155831765189831892Mouse
13207571Tcq11_mtotal cholesterol QTL 11 (mouse)1169137569179647565Mouse
1301016Szs1_mseizure susceptibility 1 (mouse)Not determined1170878743174456436Mouse
4142159Nba2_mNew Zealand Black autoimmunity 2 (mouse)Not determined151835111185835280Mouse
4141245Cq2_mcholesterol QTL 2 (mouse)Not determined1157456299191456436Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112008822175468938Mouse
1301189Lmr8_mleishmaniasis resistance 8 (mouse)Not determined1156602037189303617Mouse
1300934Cfbw1_mcystic fibrosis body weight 1 (mouse)Not determined1145145207179145325Mouse
11059557Lmr20a_mleishmaniasis resistance 20a (mouse)1158468817192468938Mouse
4141532Bmd1b_mbone mineral density 1b (mouse)Not determined1172526796173232986Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128727737181327565Mouse
1558802Skmw6_mskeletal muscle weight 6 (mouse)Not determined1167954584195154279Mouse
4141878Qrr1_mQTL rich region on chromosome 1 (mouse)Not determined170878743175320066Mouse
10054270Nba10_mNew Zealand Black autoimmunity 10 (mouse)Not determined1152794822186438620Mouse
12910521Scgq1_mspontaneous crescentic glomerulonephritis QTL 1 (mouse)1156602037176262693Mouse
1300745Gvhd1_mgraft-versus-host disease 1 (mouse)Not determined1157456299191456436Mouse
1301132Mors1_mmodifier of obesity related sterility 1 (mouse)Not determined1170379500195154279Mouse
1302158Fembrs5_mfemur breaking strength 5 (mouse)Not determined1167462514195154279Mouse
1301251Scc3_mcolon tumor susceptibility 3 (mouse)Not determined1168213823195154279Mouse
1300727Mptp1_mMPTP sensitivity 1 (mouse)Not determined1171632048192681050Mouse
4141160Cq1_mcholesterol QTL 1 (mouse)Not determined1139452188173452308Mouse
1300823Ath9_matherosclerosis 9 (mouse)Not determined1160112768194112883Mouse
10043963Obq25_mobesity QTL 25 (mouse)Not determined1154410512188410512Mouse
1301596Elnt_mescape latencies during navigation task (mouse)Not determined1162145207194111528Mouse
4142014Wbcq5_mwhite blood cell quantitative locus 5 (mouse)Not determined1141095010175095156Mouse
4142149Ctex_mCtla4 expression QTL (mouse)Not determined1153557406175468938Mouse
1301602Bslm4_mbasal locomotor activity 4 (mouse)Not determined1157456299191456436Mouse
1301202Yaa4_mY-linked autoimmune acceleration 4 (mouse)Not determined1158468817192468938Mouse
11059558Lmr20c_mleishmaniasis resistance 20c (mouse)1158468817192468938Mouse
11533913Rd6m1_mretinal degeneration 6 modifier 1 (mouse)1141233173175233272Mouse
1302132Pbw1_mpentobarbital withdrawal QTL 1 (mouse)Not determined1155831765189831892Mouse
1301710Bmd5_mbone mineral density 5 (mouse)Not determined1139602037173602216Mouse
13207587Mwmlpt1_mMorris water maze latency to platform, training, 1 (mouse)1169597438173397435Mouse
1357889Lprq3_mlipoprotein QTL 3 (mouse)Not determined1152038741186038913Mouse
13464138Hdlq107_mHDL QTL 107 (mouse)1152132744186132744Mouse
12904957Gmmq1_mgastrocnemius muscle mass QTL 1 (mouse)1155002940189002940Mouse
11049575Lmr8b_mleishmaniasis resistance 8b (mouse)1172303451195154279Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
11049576Lmr8a_mleishmaniasis resistance 8a (mouse)1139602037173602216Mouse
1300571Opfa_mopen field activity (mouse)Not determined1144531347178531592Mouse
4141149Hbnr4_mHeligmosomoides bakeri nematode resistance 4 (mouse)Not determined147125258188983224Mouse
10043899Hdlq99_mHDL QTL 99 (mouse)Not determined1147875502181875616Mouse
1301619Cafq1_mcaffeine metabolism QTL 1 (mouse)Not determined1155716221189716369Mouse
1301467Pcir1_mperiosteal circumference 1 (mouse)Not determined1141233173175233272Mouse
4142182Shali5_msurvival time to hyperoxic acute lung injury 5 (mouse)Not determined155582237185994196Mouse
12880429V25Dq1_mvitamin D inactive form serum level QTL 1 (mouse)1172632197195154279Mouse
11537365Cnes4_mC. neoformans susceptibility locus 4 (mouse)1144449142178449142Mouse
1301301Sle1_msystemic lupus erythmatosus susceptibility 1 (mouse)Not determined1152038741186038913Mouse
11251722Ewc1_methanol withdrawal and consumption 1 (mouse)1152132744186132744Mouse
1301122Cd8mts1_mCD8 T memory cell subset 1 (mouse)Not determined1155831765189831892Mouse
1301652Cpfd2_mcerebellum pattern fissures (mouse)Not determined1172303451195154279Mouse
1559024Zit1_mzinc induced tolerance 1 (mouse)Not determined1167462514195154279Mouse
1301894Skull2_mskull morphology 2 (mouse)Not determined1139602037173602216Mouse
1301932Ssta2_msusceptibility to Salmonella typhimurium antigens 2 (mouse)Not determined1155716221189716369Mouse
1301134Bmd1_mbone mineral density 1 (mouse)Not determined1156602037189303617Mouse
13207591Mwmlpa1_mMorris water maze latency to platform, all, 1 (mouse)1169797438173297435Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1357493Lgaq3_mlate growth adjusted QTL 3 (mouse)Not determined1150193673188359312Mouse
4141554Cfmq1_mcystic fibrosis modifier QTL 1 (mouse)Not determined1152038741186038913Mouse
10412074Nhdlt1_mnon-HDL cholesterol and triglyceride levels 1 (mouse)Not determined1153675990187676105Mouse
38456001Lick1_mlick rate 1, water (mouse)1170397438173397435Mouse
4142389Scfr1_mstem cell frequency regulator 1 (mouse)Not determined171632048189303617Mouse
12791001Aath6_maortic arch atherosclerosis 6 (mouse)1147219390181219390Mouse
1357618Splq5_mspleen weight QTL 5 (mouse)Not determined1150193673188359312Mouse
4141346Skmw12_mskeletal muscle weight 12 (mouse)Not determined150756737184756922Mouse
1300948Fglu2_mfasting glucose 2 (mouse)Not determined1157456299191456436Mouse
1357854Sle16_msystematic lupus erythematosus susceptibility 16 (mouse)Not determined1169038741177377587Mouse
1357485Lgq4_mlate growth QTL 4 (mouse)Not determined1150193673188359312Mouse
1301025Lbw7_mlupus NZB x NZW 7 (mouse)Not determined1152038741186038913Mouse
1301333Mop3_mmorphine preference 3 (mouse)Not determined1167756737189303617Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
12904944Tammq1_mtibialis anterior muscle mass QTL 1 (mouse)1155002940189002940Mouse
12790988Phdlc5_mplasma HDL cholesterol 5 (mouse)9160097157194097157Mouse
12792983Liq1_mlimb inflammation QTL 1 (mouse)1167586086191225397Mouse
12904936Edlmmq1_mextensor digitorum longus muscle mass QTL 1 (mouse)1155002940189002940Mouse
38456000Lick2_mlick rate 2, sucralose (mouse)1170397438173397435Mouse
1301431Pcho1_mplasma cholesterol 1 (mouse)Not determined1159262573193262693Mouse
4141483Femwf7_mfemur work to failure 7 (mouse)Not determined167462514195154279Mouse
10043863Swrl5_mSWR lupus locus 5 (mouse)Not determined1172303451195154279Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1301385Radpf2_mradiation pulmonary fibrosis 2 (mouse)Not determined1147125258182873798Mouse
12790984Pcho7_mplasma cholesterol 7 (mouse)1147219390181219390Mouse
10045887Cplaq13_mcircadian period of locomotor activity 13 (mouse)Not determined1172831765181400659Mouse
4141233Femwf12_mfemur work to failure 12 (mouse)Not determined141233173175233272Mouse
1301614Cgnz1_mchronic glomerulonephritis in NZM 1 (mouse)Not determined1152038741186038913Mouse
4141165Bglu3_mblood glucose level 3 (mouse)Not determined155831765189831892Mouse
1301523Ccrs1_mcorpus callosum hemisphere surface size 1 (mouse)Not determined1139602037173602216Mouse
4141244Bmd5c_mbone mineral density 5c (mouse)Not determined155526796189526897Mouse
12790996Aath2_maortic arch atherosclerosis 2 (mouse)1145077630179077630Mouse
10402498Lmr20_mleishmaniasis resistance 20 (mouse)Not determined1158468817192468938Mouse
1300842Sle9_msystematic lupus erythematosus susceptibility 9 (mouse)Not determined1158468817192468938Mouse
1301191Stia1_mserum transfer induced arthritis 1 (mouse)Not determined1141233173175233272Mouse
1300888Berr1_mberghei resistance locus 1 (mouse)Not determined1164143227190534272Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
11081167Tir8_mtrypanosome infection response 8 (mouse)1155716221189716369Mouse
1301866Cplaq3_mcircadian period of locomotor activity 3 (mouse)Not determined1155721528189722608Mouse
1301632Bw8q1_mbody weight at 8 weeks QTL 1 (mouse)Not determined1161201261195154279Mouse
1302193Cpfd1_mcerebellum pattern fissures (mouse)Not determined1139602037173602216Mouse
10054271Nba9_mNew Zealand Black autoimmunity 9 (mouse)Not determined1155525623189527533Mouse
1301216Cbm1_mcerebellum weight 1 (mouse)Not determined1157456299191456436Mouse
1357602Vtbt2_mvertebral trabecular bone trait 2 (mouse)Not determined1139602037173602216Mouse
1558720Bpq8_mblood pressure QTL 8 (mouse)Not determined1143284665177284803Mouse
1301565Mnotch_mmodifier of Notch (mouse)Not determined1157456299191456436Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301151Hdlq14_mHDL QTL 14 (mouse)Not determined1142489543176489734Mouse
1301309Emo1_memotionality 1 (mouse)Not determined1162977097185994196Mouse
1300740Tne1_mtotal number errors (mouse)Not determined1139602037173602216Mouse
1300969Sluc5_msusceptibility to lung cancer 5 (mouse)Not determined1151186243185186402Mouse
11059556Lmr20b_mleishmaniasis resistance 20b (mouse)1158468817192468938Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160097157194097157Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117527730179827565Mouse
1300732Melm2_mmelanoma modifier 2 (mouse)Not determined1157456299191456436Mouse
1357732Tbbmd1_mtotal body bone mineral density 1 (mouse)Not determined1171983110195154279Mouse

Markers in Region
AF016697  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381173,331,822 - 173,331,901UniSTSGRCm38
MGSCv371175,261,953 - 175,262,032UniSTSGRCm37
Celera1176,180,877 - 176,180,956UniSTS
Cytogenetic Map1H3UniSTS
cM Map194.0UniSTS
Whitehead/MRC_RH12178.28UniSTS
Darc  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381173,332,831 - 173,333,483UniSTSGRCm38
MGSCv371175,262,620 - 175,263,553UniSTSGRCm37
Celera1176,181,886 - 176,182,540UniSTS
Cytogenetic Map1H3UniSTS
cM Map194.0UniSTS
AA162249  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381173,332,053 - 173,332,218UniSTSGRCm38
MGSCv371175,262,184 - 175,262,349UniSTSGRCm37
Celera1176,181,108 - 176,181,273UniSTS
Cytogenetic Map1H3UniSTS
cM Map194.4UniSTS
cM Map194.0UniSTS
Darc  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381173,332,489 - 173,333,422UniSTSGRCm38
MGSCv371175,262,620 - 175,263,553UniSTSGRCm37
Celera1176,181,544 - 176,182,479UniSTS
Cytogenetic Map1H3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_010045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB039074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB039076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB039077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB039078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB039079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB039080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB039081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB039082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC084073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC087781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF016584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF016697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF109159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY289754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY291295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC005583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U88431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000038227   ⟹   ENSMUSP00000045134
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1173,159,457 - 173,161,069 (-)Ensembl
GRCm38.p6 Ensembl1173,331,890 - 173,333,502 (-)Ensembl
RefSeq Acc Id: ENSMUST00000194046   ⟹   ENSMUSP00000141765
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1173,159,459 - 173,161,240 (-)Ensembl
GRCm38.p6 Ensembl1173,331,892 - 173,333,673 (-)Ensembl
RefSeq Acc Id: ENSMUST00000194298
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1173,159,453 - 173,161,317 (-)Ensembl
GRCm38.p6 Ensembl1173,331,886 - 173,333,750 (-)Ensembl
RefSeq Acc Id: NM_010045   ⟹   NP_034175
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391173,159,457 - 173,161,079 (-)NCBI
GRCm381173,331,886 - 173,333,503 (-)ENTREZGENE
MGSCv371175,262,017 - 175,263,634 (-)RGD
Celera1176,180,941 - 176,182,560 (-)RGD
cM Map1 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_034175   ⟸   NM_010045
- UniProtKB: A0A0R4J0J4 (UniProtKB/TrEMBL),   Q7TSL2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000141765   ⟸   ENSMUST00000194046
RefSeq Acc Id: ENSMUSP00000045134   ⟸   ENSMUST00000038227

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9QUI6-F1-model_v2 AlphaFold Q9QUI6 1-334 view protein structure

Promoters
RGD ID:6875794
Promoter ID:EPDNEW_M1348
Type:initiation region
Name:Ackr1_1
Description:Mus musculus atypical chemokine receptor 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381173,333,512 - 173,333,572EPDNEW
RGD ID:6817584
Promoter ID:MM_KWN:2950
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ENSMUST00000038227
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361175,263,961 - 175,264,461 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1097689 AgrOrtholog
Ensembl Genes ENSMUSG00000037872 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000038227 ENTREZGENE
  ENSMUST00000038227.6 UniProtKB/TrEMBL
  ENSMUST00000194046.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Duffy_chemokine_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:13349 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1097689 ENTREZGENE
NCBI Gene 13349 ENTREZGENE
PANTHER ATYPICAL CHEMOKINE RECEPTOR 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR14181 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ackr1 PhenoGen
PRINTS DUFFYANTIGEN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0A6YWZ3_MOUSE UniProtKB/TrEMBL
  A0A0R4J0J4 ENTREZGENE, UniProtKB/TrEMBL
  ACKR1_MOUSE UniProtKB/Swiss-Prot
  Q53ZP8_MOUSE UniProtKB/TrEMBL
  Q7TSL2 ENTREZGENE, UniProtKB/TrEMBL
  Q9QUI6 ENTREZGENE
UniProt Secondary O35970 UniProtKB/Swiss-Prot
  Q91VB6 UniProtKB/Swiss-Prot
  Q920X0 UniProtKB/Swiss-Prot
  Q920X1 UniProtKB/Swiss-Prot
  Q920X2 UniProtKB/Swiss-Prot
  Q920X3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-05-07 Ackr1  atypical chemokine receptor 1 (Duffy blood group)  Darc  Duffy blood group, chemokine receptor  Symbol and/or name change 5135510 APPROVED