Snora65 (small nucleolar RNA, H/ACA box 65) - Rat Genome Database

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Gene: Snora65 (small nucleolar RNA, H/ACA box 65) Mus musculus
Analyze
Symbol: Snora65
Name: small nucleolar RNA, H/ACA box 65
RGD ID: 1621410
MGI Page MGI
Description: Predicted to be part of sno(s)RNA-containing ribonucleoprotein complex.
Type: snorna
RefSeq Status: VALIDATED
Previously known as: MBII-3; MBII-351; Rnu; Rnu65
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39232,853,313 - 32,853,430 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl232,853,303 - 32,853,432 (+)EnsemblGRCm39 Ensembl
GRCm38232,963,301 - 32,963,418 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl232,963,291 - 32,963,420 (+)EnsemblGRCm38mm10GRCm38
MGSCv37232,818,821 - 32,818,938 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36232,785,464 - 32,786,063 (+)NCBIMGSCv36mm8
Celera232,670,283 - 32,670,400 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map222.09NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11387227   PMID:11812828  


Genomics

Comparative Map Data
Snora65
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39232,853,313 - 32,853,430 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl232,853,303 - 32,853,432 (+)EnsemblGRCm39 Ensembl
GRCm38232,963,301 - 32,963,418 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl232,963,291 - 32,963,420 (+)EnsemblGRCm38mm10GRCm38
MGSCv37232,818,821 - 32,818,938 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36232,785,464 - 32,786,063 (+)NCBIMGSCv36mm8
Celera232,670,283 - 32,670,400 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map222.09NCBI
SNORA65
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389127,448,502 - 127,448,637 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9127,448,501 - 127,448,630 (-)EnsemblGRCh38hg38GRCh38
GRCh379130,210,781 - 130,210,916 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369129,250,602 - 129,250,737 (-)NCBINCBI36Build 36hg18NCBI36
Build 349127,290,334 - 127,290,470NCBI
Celera9100,861,656 - 100,861,791 (-)NCBICelera
Cytogenetic Map9q33.3NCBI
HuRef999,826,765 - 99,826,900 (-)NCBIHuRef
CHM1_19130,362,076 - 130,362,211 (-)NCBICHM1_1
T2T-CHM13v2.09139,655,451 - 139,655,586 (-)NCBIT2T-CHM13v2.0
Snora65
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8336,663,472 - 36,663,601 (+)NCBIGRCr8
mRatBN7.2316,265,801 - 16,265,930 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl316,265,801 - 16,265,930 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map3p11NCBI
LOC119873489
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha955,090,205 - 55,090,334 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0956,819,306 - 56,819,435 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1955,579,017 - 55,579,146 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0955,894,060 - 55,894,189 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0955,984,782 - 55,984,911 (+)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Snora65
3 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:131
Count of miRNA genes:128
Interacting mature miRNAs:131
Transcripts:ENSMUST00000083190
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2767911541679261Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2823629642236396Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2830805142308240Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2938444643384575Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2938444643384575Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21421456748214713Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22112972555129871Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2112972555129871Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22368914557689269Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22459001254890012Mouse
8552705Cia25_mcollagen induced arthritis 25 (mouse)Not determined22467911533523172Mouse
8552706Cia24_mcollagen induced arthritis QTL 24 (mouse)Not determined22467911533523172Mouse
12792980Fbmd1_mfemoral bone mineral density 1, females only (mouse)22503449245034492Mouse
4142130Pgis2_mproteoglycan induced spondylitis 2 (mouse)Not determined22530805156971811Mouse
12904005Cfq2_mconditioned fear QTL 2 (mouse)22702264256396228Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse
14746979Manh51_mmandible shape 51 (mouse)22896112962961129Mouse
14746997Mancz2_mmandible centroid size 2 (mouse)22896112962961129Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
12904008Cfq6_mconditioned fear QTL 6 (mouse)23120303544508204Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000083190
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl232,853,303 - 32,853,432 (+)Ensembl
GRCm38.p6 Ensembl232,963,291 - 32,963,420 (+)Ensembl
RefSeq Acc Id: NR_002898
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39232,853,313 - 32,853,430 (+)NCBI
GRCm38232,963,301 - 32,963,418 (+)ENTREZGENE
MGSCv37232,818,821 - 32,818,938 (+)RGD
Celera232,670,283 - 32,670,400 (+)RGD
cM Map2 ENTREZGENE
Sequence:
Promoters
RGD ID:6832801
Promoter ID:MM_KWN:28775
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   Lung,   MEF_B4,   MEF_B6
Transcripts:NR_002898,   OTTMUST00000029960
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36232,818,396 - 32,819,302 (+)MPROMDB
RGD ID:6877066
Promoter ID:EPDNEW_M1979
Type:single initiation site
Name:Snora65_1
Description:Mus musculus small nucleolar RNA, H/ACA box 65 , small nucleolarRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38232,963,285 - 32,963,345EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000065124 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083190 ENTREZGENE
MGD MGI:2148176 ENTREZGENE
NCBI Gene 104367 ENTREZGENE
PhenoGen Snora65 PhenoGen
RNAcentral URS0000E60AA2 RNACentral