Ccdc117 (coiled-coil domain containing 117)

Gene: Ccdc117 (coiled-coil domain containing 117) Mus musculus

Analyze

Symbol:

Ccdc117

Name:

coiled-coil domain containing 117

RGD ID:

1620675

MGI Page

MGI

Description:

Predicted to be involved in positive regulation of DNA repair and positive regulation of cell population proliferation. Predicted to be located in mitotic spindle. Is expressed in several structures, including branchial arch; central nervous system; heart; and mesenchyme derived from splanchnopleure. Orthologous to human CCDC117 (coiled-coil domain containing 117).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

1110004K02Rik; 1700026O03Rik; AU018638; AU042822; AV173073; BC018601; coiled-coil domain-containing protein 117; MGC30640; RP23-288K19.5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	5,478,887 - 5,492,217 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	5,478,887 - 5,492,187 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	5,528,887 - 5,542,217 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	5,528,887 - 5,542,187 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	5,428,890 - 5,442,220 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	5,428,890 - 5,442,158 (-)	NCBI		MGSCv36	mm8
Celera	11	6,021,879 - 6,035,212 (-)	NCBI		Celera
Cytogenetic Map	11	A1	NCBI
cM Map	11	3.61	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Breast Cancer, Familial (ISO)

vestibular schwannomatosis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (EXP)

1,2-dimethylhydrazine (EXP)

1,3-dinitrobenzene (ISO)

2,3',4,4',5-Pentachlorobiphenyl (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (ISO)

2-methylcholine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4-hydroxyphenyl retinamide (EXP)

acetamide (ISO)

acrylamide (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (EXP,ISO)

Benzo[k]fluoranthene (EXP)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (EXP)

choline (EXP)

cisplatin (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

epoxiconazole (EXP)

ethyl methanesulfonate (ISO)

fenthion (EXP)

folic acid (EXP)

FR900359 (ISO)

gallic acid (ISO)

gentamycin (ISO)

indometacin (ISO)

L-methionine (EXP)

lead diacetate (EXP)

leflunomide (ISO)

methamphetamine (ISO)

methyl methanesulfonate (ISO)

ozone (EXP)

paracetamol (EXP)

pentachlorophenol (EXP)

perfluorooctane-1-sulfonic acid (EXP)

phenobarbital (EXP,ISO)

resveratrol (EXP,ISO)

SCH 23390 (ISO)

silicon dioxide (EXP)

succimer (EXP)

testosterone (ISO)

tetrachloromethane (EXP)

thioacetamide (ISO)

titanium dioxide (EXP)

triphenyl phosphate (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of cell population proliferation (ISO)

positive regulation of DNA repair (ISO)

Cellular Component

cytoplasm (IEA)

cytoskeleton (IEA)

mitotic spindle (ISO)

nucleus (IEA)

Molecular Function

molecular_function (ND)

protein binding (ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal auditory brainstem response (IEA)

increased circulating alkaline phosphatase level (IEA)

increased grip strength (IEA)

increased startle reflex (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10349636	PMID:10725249	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:15489334	PMID:16141072	PMID:16141073	PMID:16751776
PMID:16778019	PMID:21267068	PMID:30742009	PMID:38355793

Genomics

Comparative Map Data

Ccdc117
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	5,478,887 - 5,492,217 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	5,478,887 - 5,492,187 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	5,528,887 - 5,542,217 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	5,528,887 - 5,542,187 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	5,428,890 - 5,442,220 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	5,428,890 - 5,442,158 (-)	NCBI		MGSCv36	mm8
Celera	11	6,021,879 - 6,035,212 (-)	NCBI		Celera
Cytogenetic Map	11	A1	NCBI
cM Map	11	3.61	NCBI

CCDC117
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	28,772,695 - 28,789,301 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	28,772,674 - 28,789,301 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	29,168,683 - 29,185,289 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	27,498,707 - 27,515,278 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	22	12,968,632 - 12,985,253 (+)	NCBI		Celera
Cytogenetic Map	22	q12.1	NCBI
HuRef	22	12,133,904 - 12,150,198 (+)	NCBI		HuRef
CHM1_1	22	29,127,700 - 29,144,317 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	22	29,234,314 - 29,250,593 (+)	NCBI		T2T-CHM13v2.0

Ccdc117
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	84,614,282 - 84,623,648 (-)	NCBI		GRCr8
mRatBN7.2	14	80,399,236 - 80,409,824 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	80,400,294 - 80,409,659 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	84,802,537 - 84,811,906 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	86,042,655 - 86,052,024 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	82,491,973 - 82,501,342 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	85,763,396 - 85,772,762 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	85,763,397 - 85,772,762 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	86,433,499 - 86,442,865 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	86,161,551 - 86,170,917 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	14	79,285,994 - 79,295,359 (-)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

Ccdc117
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955455	3,019,710 - 3,034,559 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955455	3,019,373 - 3,034,891 (+)	NCBI	ChiLan1.0	ChiLan1.0

CCDC117
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	38,771,371 - 38,820,588 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	41,470,110 - 41,519,333 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	9,841,876 - 9,891,088 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	27,544,719 - 27,593,279 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	27,544,719 - 27,561,144 (+)	Ensembl	panpan1.1		panPan2

CCDC117
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	22,145,773 - 22,158,835 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	22,145,775 - 22,156,449 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	22,017,391 - 22,030,425 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	22,519,163 - 22,532,191 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	22,519,113 - 22,532,188 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	22,229,499 - 22,242,525 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	22,492,908 - 22,505,980 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	22,555,725 - 22,568,801 (+)	NCBI		UU_Cfam_GSD_1.0

Ccdc117
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	112,982,165 - 112,994,275 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936657	2,876,408 - 2,888,566 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936657	2,876,417 - 2,888,542 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC117
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	45,995,586 - 46,008,290 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	45,995,628 - 46,008,290 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

CCDC117
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	11,650,223 - 11,665,354 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	11,650,243 - 11,666,009 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	114,488,416 - 114,503,648 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccdc117
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	5,103,407 - 5,120,336 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624747	5,103,502 - 5,119,726 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ccdc117
547 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	784
Count of miRNA genes:	450
Interacting mature miRNAs:	537
Transcripts:	ENSMUST00000020776
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301765	Skull15_m	skull morphology 15 (mouse)			Not determined		11	1	25976374	Mouse
1300768	Tshp9_m	tooth shape 9 (mouse)			Not determined		11	1	25976374	Mouse
1300599	Cocrb11_m	cocaine related behavior 11 (mouse)			Not determined		11	2670355	36671472	Mouse
1300661	Lmr6_m	leishmaniasis resistance 6 (mouse)			Not determined		11	1	25976374	Mouse
1357722	Vtbt11_m	vertebral trabecular bone trait 11 (mouse)			Not determined		11	1	23880487	Mouse
10044008	Hbnr15_m	Heligmosomoides bakeri nematode resistance 15 (mouse)			Not determined		11	227052	34227232	Mouse
10053676	Eae44a_m	experimental allergic encephalomyelitis susceptibility 44a (mouse)			Not determined		11	4507896	21379532	Mouse
27226735	Metcl16_m	metatarsal-calcaneal length 16, 16 week (mouse)					11	5250000	35090827	Mouse
27095914	Pglq16_m	pelvic girdle length QTL 16, 16 week (mouse)					11	3250000	18150000	Mouse
27095919	Pglq10_m	pelvic girdle length QTL 10, 10 week (mouse)					11	3250000	18450000	Mouse
27226798	Scvln18_m	sacral vertebrae length 2, 16 week (mouse)					11	3250000	60690826	Mouse
26884446	Sklq10_m	skull length QTL 10, 10 week (mouse)					11	3250000	62890826	Mouse
26884453	Sklq16_m	skull length QTL 16, 16 week (mouse)					11	3250000	72690826	Mouse
27095909	Scvln6_m	sacral vertebrae length 2, 5 week (mouse)					11	3250000	44090827	Mouse
27095904	Scvln12_m	sacral vertebrae length 2, 10 week (mouse)					11	3250000	34495048	Mouse
27095925	Pglq5_m	pelvic girdle length QTL 5, 5 week (mouse)					11	3250000	19750000	Mouse
13208559	Wght10_m	weight 10 (mouse)					11	3950000	88890826	Mouse
13208558	Lgth12_m	body length 12 (mouse)					11	3950000	94890826	Mouse
27226741	Metcl5_m	metatarsal-calcaneal length 5, 5 week (mouse)					11	4650000	46290827	Mouse

Markers in Region

AV173073

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	11	5,530,033 - 5,530,122	UniSTS	GRCm38
MGSCv37	11	5,430,036 - 5,430,125	UniSTS	GRCm37
Celera	11	6,023,025 - 6,023,114	UniSTS
Cytogenetic Map	11	A1	UniSTS
Whitehead/MRC_RH	11	27.98	UniSTS

UniSTS:236513

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	11	5,528,969 - 5,529,059	UniSTS	GRCm38
MGSCv37	11	5,428,972 - 5,429,062	UniSTS	GRCm37
Celera	11	6,021,961 - 6,022,051	UniSTS
Cytogenetic Map	11	A1	UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_134033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK003430	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL662876	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC003203	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC008541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC018601	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC034558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC059888	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BQ768997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466574	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ562409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ566098	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ690414	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ698855	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000020776 ⟹ ENSMUSP00000020776

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	5,478,887 - 5,492,187 (-)	Ensembl
GRCm38.p6 Ensembl	11	5,528,887 - 5,542,187 (-)	Ensembl

RefSeq Acc Id:

NM_134033 ⟹ NP_598794

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	5,478,887 - 5,492,217 (-)	NCBI
GRCm38	11	5,528,887 - 5,542,217 (-)	ENTREZGENE
MGSCv37	11	5,428,890 - 5,442,220 (-)	RGD
Celera	11	6,021,879 - 6,035,212 (-)	RGD
cM Map	11		ENTREZGENE

Sequence:

show sequence

TCTCTGGGCGGTCCGGAGTGGAGGGTTCTAGAAGGCGTGAGGTTGGGGGGCCGAAGAGGGCTCA
GAGGCAGGTAATCGTGGGTAGCGTTGGTGGCGGCCACTGCGGAGTCTGGGAAAACGAACGACTG
GGGTCGCGGACGCAGCCTCGTCTGGAAAGCCATGGCAGCCCTCGGCCGGCCCTTCAGCGGCCTC
CCTCTGAGCGGCAGCGCGGACTTCCTGCAGCCGCCACCGGCCTTCGCGGGCCGGGCCTTCCCGC
CAGGAGCCGCCGGCCATGACCTGGCCCCGCGGCCCGGTGTCCGCGGCGCGCCGAGCAGCCCGGG
CGGGAGAACAGCGCGCGGACGTGTTTCCATTCACTGTAGAAAGAAACACAAGCGGTTGGCGGAG
GATGATGAGTGTCCAGTAAGAAAGAAACGACTGACTGAAGCTGAACTCGGTGCAGTTACTGATG
AATGGGCTCTCGGCGCACATCAGGGAAGAGAAGGTCATGGGGTAAACACGTGTCCTAGCAGCCT
TTCTATGCCCAGCATGCTAGATGTGGTCTGTGAGGAAATGGATCAGACAACTGGAGAACCACAG
TGTGAAGTCGCCCGAAGGCGGCTGCAAGAGATTGAGGACAGGATAATTGACGAAGATGAAGAGG
TTGAAAGTGACAGAAATGTTAGCCACCTCCCAAGTCTTGTCCTTTCTGACACCATGAAAACGGG
TTTGAAGAGGGAATTTGATGAAGTCTTCACAAAGAGGATGATTGAGTCTATGAGCCGTCCTTCT
ATGGAGCTTGTGCTCTGGAAACCTCTCCCTGAACTCCTTCCTGAGAAGCCAAAGCCATCATCTA
GCCCTAAGAACTACAGGAGAGAGAGCCAAGCAAAGCACGCAGCTCCGGGCACTGCGTTCCCACA
GAGGACTGAAGGGTTGCTGGAACCTCAGTGCGCAGACGCGCCGCTTTACCGTAGTCTGGAGGCA
GCTACTAGCACAGAGGAGGAGATGGAGCTCTAGACACCCGTTCTGCTCTAACTTGACAAGTCGG
AGAAGGCTCCTGCGTTCAGAAATGAGCCTGCCTGCAGAGTATAGGGGCCTGAAAGTTTTATGAA
ACGGGTGTAATATCTCCTCTGCCTGTGACTTGGGTGGGACTGTCATTGTGGGTAGCCATTTATT
GAATTCAACTTTTTGCCAAGGAAGCTTATCTCAAGGGAAATGCAGTTTTTTAATAGGCTTATCC
AGGAAATGTTACAGTCTCTTTAACGACAGCTATAGATGCTGGATGTGTTCCGATGACTTAGGTC
ATGTCACATTGTTGAAGCCATTCATTCTTGAGATGATTCTGTACAGGAGTGCTCCTAATCGCCA
CTGCACCCTAATTGCTGAGTCATGTGCTGAGCTACTTGTAGTGGTCACTGTACACGTGGGGCTC
GGGAGGGAAGAGAGCAGGACTTGTCTCTTGTGAAGGAATGGAACAAGCAAAGAAACTTGTGTTG
GTGTCAGGTTGGTGTAGCTGGATCACCCAAGTAGTAGCCCTTGATCTCCTTTCATGACGGATAG
GCTCAGTTAGTCAGGAATGTTTACACCTCAGTTAACTTCAGTGATTGACTTAAAGACTGGGAGG
TATATTGCCTGTGAGAGAAATGTCTTTTCATGAATCCTAAGGACATGCTGTGTCAGCTAAACCT
ACAATTGATTGCTTCTAGAGTTTAAAAAGGGAAAGTTGTGCTTGTATTTGCAAGTTGAATTTTT
TTAATGTTGGTTCCAAAAACAGTGAATTAGCTGAAAAGAAATGGAGAAGTGTCTTGGAGATTTA
CTGAAATAGCTAATTGTCAGGTGCTTAAGCTTTTGTGCAGTAAGCCTAAAAGTTAGCAGAAGAT
GGCCTCCTGCCAGCAGGAAATCTTTACCCTTTAGTACCCGAACCAGTCTCAAGGTGTTCTTTGG
AAATAACCAGGGTTAAAGTTTTTAATTTCTCAGGAAGAGCTCTTCAGCATGGCAGGACGTGTAA
TGAGGGCTTTCGCAAGTCCTTCAGCGCTGCAGAGCAGTAAGCTATCCATCCAGTGAGTGTGGCG
GCTCTTTCTACAGCTGAACTCCTCCTCAGTTGAGTTTTCAGTTTCTGGCTTGCTTCTCCCTTTG
TATAGGGGAGAACAGAGAAGAGGTTTATGCTGAGGGGGGGTGACTTTTTAGAAACGTAGCTTCT
TGGCGTTTTGCAACCCATGCTGGCCTCCCTCCTGCAGATGGCATAGGAGTCCGTCTGTCTTTGG
ACTGTCTCCTCTGCTGTTGTTCCTGCTCTCTCCGTTTCTGTCTAGATGTCAGGAAAAGGTTTAA
TGTTTAATATTTAAACAAAATATTTATATCTACACAATAAAGTTAATCAACCTTCAAACCAGTC
TTGAAGCCAGCTACTTGTTTCTTCATCTCAGACTCCTAGGGGAATGAAAGCTGTCTTCTGTGAA
TGTGCAAGGGTTTGGCTCGTGTCATTTGAAAACTCCTGGCTTATCTAATGGGACCAGCTTGTGA
AGTTTATAGCCTTAAAGAAATCTCTGTGCTAAGTTTTAGAACAGTTTAGAACCATGCAGGGATG
CCGAGAGTCTGGAGTTAGCCCAGTGTTAGGGTAGGAAGGTAGTGGCAGCTTTCCAAAGGGCCTA
AAACACCAGGACTGCCTCTGTGAAAGGCCCGAGTGGCTTTGATGCAGTTGGTAACCACTTGAGA
GCAGAGATGTCTTAACTTGTCAGGAGTCCTTACCTGACATGACCCTGTTTCAACAGGAAAGTAG
ATGTTTTGTGCTCCTTTTTGGATTTTATCTTCTTGCACATGTTTGTACAGAAATCACCTTCATC
CTTGTGGTGCTTACACACACCCAGTTGTCTCCACAGCTCTGATACCTTTGCCTTCTGTTCTCCT
CTCTAGCATAAGACTTTGGCTTCTGCCTTAAGGTTTTCCTAAGGAATTAACAGGTCTTTTCATC
TTGTATAGTTTTTACAGTGTGAATCCAACATTGGCTCAGTATGCTAATGTGACAGTCAACAGTT
ATCTAAAGCAGGTGAGCTCTGATGAACAAATGTATTTTCAGTGAGTCTGAGTCGGGTGTATGTG
GGTTTTTTGGTTCTTGGCTTGGGGCTTTTTGTTGTTGTTGTTCTTAATAATATGAGAATCCAGT
TCTCATGACAAGAACCAGTTTAAAAACTGCTCGTTCTTAAAAAGGTAAAACTAAGATTTAGAAA
CAAGGCAGGCCTTAGAGCCGAGGGAGACTATTAGGCAGCAGGCCAAACCACTCTGGCCCTGGAG
CCGCCTTTGTTAACAGCAACAAGAATGCTGCAGTGCTACAACGTGCTGGAAGATGTGTCAGATT
TGCTTTAAAGATGAGAATCTGGTGTTTCTGTACTTTATTATTTTCAATAAAACTCAATGTTTTG
AACTTTTAAAAAAAAAAAAAAAAAAA

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Protein Sequences


Protein RefSeqs	NP_598794	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH03203	(Get FASTA)	NCBI Sequence Viewer
	AAH34558	(Get FASTA)	NCBI Sequence Viewer
	AAH59888	(Get FASTA)	NCBI Sequence Viewer
	EDL40535	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000020776
	ENSMUSP00000020776.5
GenBank Protein	Q6PB51	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_598794 ⟸ NM_134033

- UniProtKB:

Q8K217 (UniProtKB/Swiss-Prot), Q99LL1 (UniProtKB/Swiss-Prot), Q6PB51 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MAALGRPFSGLPLSGSADFLQPPPAFAGRAFPPGAAGHDLAPRPGVRGAPSSPGGRTARGRVSI
HCRKKHKRLAEDDECPVRKKRLTEAELGAVTDEWALGAHQGREGHGVNTCPSSLSMPSMLDVVC
EEMDQTTGEPQCEVARRRLQEIEDRIIDEDEEVESDRNVSHLPSLVLSDTMKTGLKREFDEVFT
KRMIESMSRPSMELVLWKPLPELLPEKPKPSSSPKNYRRESQAKHAAPGTAFPQRTEGLLEPQC
ADAPLYRSLEAATSTEEEMEL

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RefSeq Acc Id:

ENSMUSP00000020776 ⟸ ENSMUST00000020776

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6PB51-F1-model_v2	AlphaFold	Q6PB51	1-277	view protein structure

Promoters

RGD ID:

6820547

Promoter ID:

MM_KWN:6297

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

OTTMUST00000011375

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	11	5,441,996 - 5,442,496 (-)	MPROMDB

RGD ID:

8673844

Promoter ID:

EPDNEW_M14953

Type:

initiation region

Name:

Ccdc117_1

Description:

Mus musculus coiled-coil domain containing 117 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	11	5,542,154 - 5,542,214	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:2144383	AgrOrtholog
Ensembl Genes	ENSMUSG00000020482	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000020776	ENTREZGENE
	ENSMUST00000020776.5	UniProtKB/Swiss-Prot
InterPro	CCDC117	UniProtKB/Swiss-Prot
KEGG Report	mmu:104479	UniProtKB/Swiss-Prot
MGD	MGI:2144383	ENTREZGENE
NCBI Gene	104479	ENTREZGENE
PANTHER	COILED-COIL DOMAIN-CONTAINING PROTEIN 117	UniProtKB/Swiss-Prot
	PTHR36128	UniProtKB/Swiss-Prot
Pfam	CCDC117	UniProtKB/Swiss-Prot
PhenoGen	Ccdc117	PhenoGen
UniProt	CC117_MOUSE	UniProtKB/Swiss-Prot, ENTREZGENE
	Q8K217	ENTREZGENE
	Q99LL1	ENTREZGENE
UniProt Secondary	Q8K217	UniProtKB/Swiss-Prot
	Q99LL1	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Mammalian Phenotype