Hdac10 (histone deacetylase 10) - Rat Genome Database

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Gene: Hdac10 (histone deacetylase 10) Mus musculus
Analyze
Symbol: Hdac10
Name: histone deacetylase 10
RGD ID: 1620648
MGI Page MGI
Description: Predicted to enable histone deacetylase activity and histone deacetylase binding activity. Predicted to be involved in several processes, including positive regulation of mismatch repair; regulation of gene expression; and spermidine deacetylation. Predicted to act upstream of or within chromatin remodeling. Predicted to be located in cytosol and nucleoplasm. Predicted to be part of histone deacetylase complex. Is expressed in several structures, including alimentary system; eye; genitourinary system; immune system; and nervous system. Orthologous to human HDAC10 (histone deacetylase 10).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AW548891; Hd10; polyamine deacetylase HDAC10
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391589,007,506 - 89,012,903 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1589,007,510 - 89,012,903 (-)EnsemblGRCm39 Ensembl
GRCm381589,123,303 - 89,128,700 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1589,123,307 - 89,128,700 (-)EnsemblGRCm38mm10GRCm38
MGSCv371588,953,733 - 88,959,130 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361588,951,071 - 88,956,393 (-)NCBIMGSCv36mm8
Celera1591,251,865 - 91,257,263 (-)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1544.64NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Physical and functional HAT/HDAC interplay regulates protein acetylation balance. Peserico A and Simone C, J Biomed Biotechnol. 2011;2011:371832. doi: 10.1155/2011/371832. Epub 2010 Dec 5.
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11677242   PMID:12466851   PMID:12477932   PMID:15489334   PMID:16141072   PMID:16141073   PMID:16602821  
PMID:18824292   PMID:18926829   PMID:20059953   PMID:20211142   PMID:21267068   PMID:21731673   PMID:21873635   PMID:24194600   PMID:25011550   PMID:27626380   PMID:28028172   PMID:29617656  
PMID:31949209   PMID:32540961   PMID:34321999   PMID:36538592  


Genomics

Comparative Map Data
Hdac10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391589,007,506 - 89,012,903 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1589,007,510 - 89,012,903 (-)EnsemblGRCm39 Ensembl
GRCm381589,123,303 - 89,128,700 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1589,123,307 - 89,128,700 (-)EnsemblGRCm38mm10GRCm38
MGSCv371588,953,733 - 88,959,130 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361588,951,071 - 88,956,393 (-)NCBIMGSCv36mm8
Celera1591,251,865 - 91,257,263 (-)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1544.64NCBI
HDAC10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382250,245,183 - 50,251,265 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2250,245,183 - 50,251,405 (-)EnsemblGRCh38hg38GRCh38
GRCh372250,683,612 - 50,689,694 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362249,025,739 - 49,031,941 (-)NCBINCBI36Build 36hg18NCBI36
Build 342248,986,071 - 48,992,271NCBI
Celera2234,558,514 - 34,564,737 (-)NCBICelera
Cytogenetic Map22q13.33NCBI
HuRef2233,581,335 - 33,587,801 (-)NCBIHuRef
CHM1_12250,642,365 - 50,648,588 (-)NCBICHM1_1
T2T-CHM13v2.02250,752,185 - 50,758,268 (-)NCBIT2T-CHM13v2.0
Hdac10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87122,078,768 - 122,084,457 (-)NCBIGRCr8
mRatBN7.27120,199,126 - 120,205,850 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7120,199,129 - 120,204,228 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7121,950,152 - 121,955,255 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07124,176,317 - 124,181,420 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07124,139,323 - 124,144,426 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07130,102,335 - 130,109,036 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7130,102,347 - 130,107,437 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07129,788,051 - 129,794,135 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47127,423,736 - 127,428,838 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17127,459,992 - 127,462,839 (-)NCBI
Celera7116,673,021 - 116,678,123 (-)NCBICelera
Cytogenetic Map7q34NCBI
Hdac10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541333,272,714 - 33,277,686 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541333,272,600 - 33,277,893 (-)NCBIChiLan1.0ChiLan1.0
HDAC10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22360,150,932 - 60,158,556 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12262,837,088 - 62,844,697 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02230,473,753 - 30,481,369 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12249,473,369 - 49,479,251 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2249,473,369 - 49,479,216 (-)Ensemblpanpan1.1panPan2
HDAC10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11016,996,307 - 17,001,365 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1016,995,762 - 17,078,262 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1016,974,507 - 16,979,565 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01017,723,533 - 17,728,591 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1017,722,764 - 17,728,591 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11017,447,560 - 17,452,618 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01017,770,649 - 17,775,707 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01017,902,859 - 17,907,917 (+)NCBIUU_Cfam_GSD_1.0
Hdac10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945562,006 - 567,709 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936629562,022 - 567,822 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936629562,038 - 567,709 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HDAC10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl5439,808 - 445,334 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.15439,142 - 445,337 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25110,662,633 - 110,668,163 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HDAC10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11932,735,091 - 32,741,200 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1932,735,406 - 32,740,817 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604592,613,492 - 92,620,124 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hdac10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624752518,563 - 524,497 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Hdac10
138 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1450
Count of miRNA genes:518
Interacting mature miRNAs:622
Transcripts:ENSMUST00000082197, ENSMUST00000109347, ENSMUST00000128908, ENSMUST00000129398, ENSMUST00000134111, ENSMUST00000138245, ENSMUST00000143465, ENSMUST00000153195
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154216339695497881Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154836339698397881Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155356339689584203Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155711700591117153Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155711700591117153Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156158420095584200Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156316390397163995Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156481182698811946Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156533657899341028Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156552537699525499Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567270698101270847Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570349271104073951Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570349271104073951Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572382669104073951Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573430144104073951Mouse
1301472Pain1_mpain 1 (mouse)Not determined157532084690813185Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577527592104073951Mouse
4142060W3q6_mweight 3 weeks QTL 6 (mouse)Not determined78601103102901704Mouse
1357894Epfpq3_mepididymal fat percentage QTL 3 (mouse)Not determined1578601103102901704Mouse
14928306Manh79_mmandible shape 79 (mouse)1578847557104073951Mouse
12880411V125Dq11_mvitamin D active form serum level QTL 11 (mouse)1578897881104073951Mouse
10402490Dipa5_mdrug induced psychomotor activation 5 (mouse)Not determined1579163411104073951Mouse
4141897Imrfq2_mimmune response to Factor IX QTL 2 (mouse)Not determined79908940104073951Mouse
1301284Cosz3_mcocaine seizure 3 (mouse)Not determined1580313634104073951Mouse
4141902Cia37_mcollagen induced arthritis 37 (mouse)Not determined1580884933104073951Mouse
1300974Pgia9_mproteoglycan induced arthritis 9 (mouse)Not determined1580884933104073951Mouse
4141511Gdcr1_mglycerolphosphate dehydrogenase regulator 1 (mouse)Not determined82615474104073951Mouse
11530037Sluc34a_msusceptibility to lung cancer 34a (mouse)1585896437104073951Mouse
11530038Sluc34b_msusceptibility to lung cancer 34b (mouse)1585896437104073951Mouse
1357614Bmca_mbile mucin accumulation (mouse)Not determined1585896437104073951Mouse
1301918Skull22_mskull morphology 22 (mouse)Not determined1585901546104073951Mouse
1558845Alprf_malcohol preference (mouse)Not determined158734927190274568Mouse
12738413Lfibq10_mliver fibrosis QTL 10 (mouse)158784208589927286Mouse

Markers in Region
AW548891  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381589,123,827 - 89,123,952UniSTSGRCm38
MGSCv371588,954,257 - 88,954,382UniSTSGRCm37
Celera1591,252,389 - 91,252,514UniSTS
Cytogenetic Map15E3UniSTS
Whitehead/MRC_RH15811.97UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001416149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001416150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001416151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001416152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001416153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001416154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001416155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001416156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001416157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001416158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001416159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001416160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001416161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001416162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_199198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_028447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_028448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_028449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_183467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC113069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI448228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC064018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU706947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000082197   ⟹   ENSMUSP00000080832
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,007,510 - 89,012,903 (-)Ensembl
GRCm38.p6 Ensembl1589,123,307 - 89,128,700 (-)Ensembl
RefSeq Acc Id: ENSMUST00000109347   ⟹   ENSMUSP00000104971
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,007,775 - 89,012,651 (-)Ensembl
GRCm38.p6 Ensembl1589,123,572 - 89,128,448 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128908
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,007,512 - 89,012,864 (-)Ensembl
GRCm38.p6 Ensembl1589,123,309 - 89,128,661 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129398
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,007,510 - 89,012,856 (-)Ensembl
GRCm38.p6 Ensembl1589,123,307 - 89,128,653 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134111
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,007,514 - 89,012,882 (-)Ensembl
GRCm38.p6 Ensembl1589,123,311 - 89,128,679 (-)Ensembl
RefSeq Acc Id: ENSMUST00000138245
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,007,877 - 89,009,888 (-)Ensembl
GRCm38.p6 Ensembl1589,123,674 - 89,125,685 (-)Ensembl
RefSeq Acc Id: ENSMUST00000143465
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,007,512 - 89,012,854 (-)Ensembl
GRCm38.p6 Ensembl1589,123,309 - 89,128,651 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153195
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,010,182 - 89,011,693 (-)Ensembl
GRCm38.p6 Ensembl1589,125,979 - 89,127,490 (-)Ensembl
RefSeq Acc Id: NM_001416149   ⟹   NP_001403078
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,007,508 - 89,012,864 (-)NCBI
RefSeq Acc Id: NM_001416150   ⟹   NP_001403079
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,007,508 - 89,012,864 (-)NCBI
RefSeq Acc Id: NM_001416151   ⟹   NP_001403080
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,007,508 - 89,012,864 (-)NCBI
RefSeq Acc Id: NM_001416152   ⟹   NP_001403081
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,007,508 - 89,012,864 (-)NCBI
RefSeq Acc Id: NM_001416153   ⟹   NP_001403082
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,007,508 - 89,012,864 (-)NCBI
RefSeq Acc Id: NM_001416154   ⟹   NP_001403083
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,007,508 - 89,012,864 (-)NCBI
RefSeq Acc Id: NM_001416155   ⟹   NP_001403084
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,007,508 - 89,012,864 (-)NCBI
RefSeq Acc Id: NM_001416156   ⟹   NP_001403085
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,007,508 - 89,012,864 (-)NCBI
RefSeq Acc Id: NM_001416157   ⟹   NP_001403086
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,007,508 - 89,012,864 (-)NCBI
RefSeq Acc Id: NM_001416158   ⟹   NP_001403087
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,007,508 - 89,012,864 (-)NCBI
RefSeq Acc Id: NM_001416159   ⟹   NP_001403088
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,007,508 - 89,012,864 (-)NCBI
RefSeq Acc Id: NM_001416160   ⟹   NP_001403089
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,007,508 - 89,012,864 (-)NCBI
RefSeq Acc Id: NM_001416161   ⟹   NP_001403090
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,007,508 - 89,012,864 (-)NCBI
RefSeq Acc Id: NM_001416162   ⟹   NP_001403091
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,007,508 - 89,012,864 (-)NCBI
RefSeq Acc Id: NM_199198   ⟹   NP_954668
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,007,508 - 89,012,864 (-)NCBI
GRCm381589,123,303 - 89,128,700 (-)ENTREZGENE
MGSCv371588,953,733 - 88,959,130 (-)RGD
Celera1591,251,865 - 91,257,263 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_028447
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,007,506 - 89,012,903 (-)NCBI
GRCm381589,123,303 - 89,128,700 (-)ENTREZGENE
MGSCv371588,953,733 - 88,959,130 (-)RGD
Celera1591,251,865 - 91,257,263 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_028448
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,007,506 - 89,012,903 (-)NCBI
GRCm381589,123,303 - 89,128,700 (-)ENTREZGENE
MGSCv371588,953,733 - 88,959,130 (-)RGD
Celera1591,251,865 - 91,257,263 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_028449
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,007,506 - 89,012,903 (-)NCBI
GRCm381589,123,303 - 89,128,700 (-)ENTREZGENE
MGSCv371588,953,733 - 88,959,130 (-)RGD
Celera1591,251,865 - 91,257,263 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_183467
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,007,508 - 89,012,864 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_954668   ⟸   NM_199198
- Peptide Label: isoform 1
- UniProtKB: G3X9I8 (UniProtKB/Swiss-Prot),   Q6P3E7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000104971   ⟸   ENSMUST00000109347
RefSeq Acc Id: ENSMUSP00000080832   ⟸   ENSMUST00000082197
RefSeq Acc Id: NP_001403090   ⟸   NM_001416161
- Peptide Label: isoform 14
RefSeq Acc Id: NP_001403091   ⟸   NM_001416162
- Peptide Label: isoform 15
RefSeq Acc Id: NP_001403089   ⟸   NM_001416160
- Peptide Label: isoform 13
RefSeq Acc Id: NP_001403087   ⟸   NM_001416158
- Peptide Label: isoform 11
RefSeq Acc Id: NP_001403086   ⟸   NM_001416157
- Peptide Label: isoform 10
RefSeq Acc Id: NP_001403085   ⟸   NM_001416156
- Peptide Label: isoform 9
RefSeq Acc Id: NP_001403081   ⟸   NM_001416152
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001403083   ⟸   NM_001416154
- Peptide Label: isoform 7
RefSeq Acc Id: NP_001403082   ⟸   NM_001416153
- Peptide Label: isoform 6
RefSeq Acc Id: NP_001403079   ⟸   NM_001416150
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001403080   ⟸   NM_001416151
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001403084   ⟸   NM_001416155
- Peptide Label: isoform 8
RefSeq Acc Id: NP_001403078   ⟸   NM_001416149
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001403088   ⟸   NM_001416159
- Peptide Label: isoform 12
Protein Domains
Histone deacetylase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6P3E7-F1-model_v2 AlphaFold Q6P3E7 1-666 view protein structure

Promoters
RGD ID:6826087
Promoter ID:MM_KWN:19396
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Spleen
Transcripts:OTTMUST00000041892
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361588,958,071 - 88,958,571 (-)MPROMDB
RGD ID:6826086
Promoter ID:MM_KWN:19397
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000109347,   ENSMUST00000109348,   NM_199198,   NR_028447,   NR_028448,   NR_028449,   OTTMUST00000041889
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361588,958,849 - 88,959,349 (-)MPROMDB
RGD ID:8684702
Promoter ID:EPDNEW_M20382
Type:multiple initiation site
Name:Hdac10_1
Description:Mus musculus histone deacetylase 10 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381589,128,661 - 89,128,721EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2158340 AgrOrtholog
Ensembl Genes ENSMUSG00000062906 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000082197 ENTREZGENE
  ENSMUST00000082197.12 UniProtKB/Swiss-Prot
  ENSMUST00000109347.2 UniProtKB/TrEMBL
  ENSMUST00000128908 ENTREZGENE
  ENSMUST00000129398 ENTREZGENE
  ENSMUST00000143465 ENTREZGENE
Gene3D-CATH 3.40.800.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro His_deacetylse UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  His_deacetylse_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  His_deacetylse_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ureohydrolase_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:170787 UniProtKB/Swiss-Prot
MGD MGI:2158340 ENTREZGENE
NCBI Gene 170787 ENTREZGENE
PANTHER HISTONE DEACETYLASE HDAC1-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POLYAMINE DEACETYLASE HDAC10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Hist_deacetyl UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Hdac10 PhenoGen
PRINTS HDASUPER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52768 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3Z7T4_MOUSE UniProtKB/TrEMBL
  G3X9I8 ENTREZGENE
  HDA10_MOUSE UniProtKB/Swiss-Prot
  Q05DI9_MOUSE UniProtKB/TrEMBL
  Q3U4U4_MOUSE UniProtKB/TrEMBL
  Q6P3E7 ENTREZGENE
UniProt Secondary G3X9I8 UniProtKB/Swiss-Prot