Srbd1 (S1 RNA binding domain 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Srbd1 (S1 RNA binding domain 1) Mus musculus
Analyze
Symbol: Srbd1
Name: S1 RNA binding domain 1
RGD ID: 1619924
MGI Page MGI
Description: Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Is expressed in olfactory epithelium and thymus primordium. Orthologous to human SRBD1 (S1 RNA binding domain 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI461933; C85414; D530025C17Rik; MGC117756; MGC198776; S1 RNA-binding domain-containing protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391786,292,093 - 86,452,644 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1786,292,093 - 86,452,603 (-)EnsemblGRCm39 Ensembl
GRCm381785,984,665 - 86,145,216 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1785,984,665 - 86,145,175 (-)EnsemblGRCm38mm10GRCm38
MGSCv371786,384,005 - 86,544,515 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361785,892,991 - 85,948,757 (-)NCBIMGSCv36mm8
Celera1790,356,710 - 90,517,663 (-)NCBICelera
Cytogenetic Map17E4NCBI
cM Map1756.51NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:14610273   PMID:16141072   PMID:16141073  
PMID:17967808   PMID:18799693   PMID:21267068   PMID:21677750   PMID:21873635   PMID:26206133   PMID:38355793  


Genomics

Comparative Map Data
Srbd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391786,292,093 - 86,452,644 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1786,292,093 - 86,452,603 (-)EnsemblGRCm39 Ensembl
GRCm381785,984,665 - 86,145,216 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1785,984,665 - 86,145,175 (-)EnsemblGRCm38mm10GRCm38
MGSCv371786,384,005 - 86,544,515 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361785,892,991 - 85,948,757 (-)NCBIMGSCv36mm8
Celera1790,356,710 - 90,517,663 (-)NCBICelera
Cytogenetic Map17E4NCBI
cM Map1756.51NCBI
SRBD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38245,388,680 - 45,611,267 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl245,388,680 - 45,612,165 (-)EnsemblGRCh38hg38GRCh38
GRCh37245,615,819 - 45,838,406 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36245,469,324 - 45,691,907 (-)NCBINCBI36Build 36hg18NCBI36
Celera245,454,104 - 45,676,639 (-)NCBICelera
Cytogenetic Map2p21NCBI
HuRef245,353,674 - 45,576,490 (-)NCBIHuRef
CHM1_1245,547,166 - 45,769,442 (-)NCBICHM1_1
T2T-CHM13v2.0245,393,909 - 45,616,311 (-)NCBIT2T-CHM13v2.0
Srbd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8614,226,551 - 14,417,494 (+)NCBIGRCr8
mRatBN7.268,473,591 - 8,664,544 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl68,475,542 - 8,664,544 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx68,752,432 - 8,941,488 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.069,061,821 - 9,250,883 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.068,589,140 - 8,778,192 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.069,266,559 - 9,459,212 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl69,266,891 - 9,459,188 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.069,187,407 - 9,380,438 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.469,412,281 - 9,600,715 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera68,203,595 - 8,391,774 (+)NCBICelera
Cytogenetic Map6q12NCBI
Srbd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544112,375,565 - 12,606,923 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544112,374,940 - 12,642,295 (-)NCBIChiLan1.0ChiLan1.0
SRBD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21280,784,561 - 81,014,690 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A80,790,401 - 81,018,658 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A45,493,552 - 45,717,823 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A46,424,686 - 46,648,193 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A46,424,686 - 46,641,817 (-)Ensemblpanpan1.1panPan2
SRBD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11047,746,850 - 47,939,124 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1047,721,126 - 47,939,042 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1047,602,280 - 47,794,371 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01048,622,322 - 48,812,070 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1048,595,853 - 48,812,330 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11048,330,577 - 48,519,821 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01048,619,345 - 48,811,568 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01048,802,229 - 48,991,976 (-)NCBIUU_Cfam_GSD_1.0
Srbd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629235,105,621 - 35,316,132 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365086,534,245 - 6,746,142 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365086,534,218 - 6,746,018 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SRBD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl394,909,127 - 95,138,915 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1394,909,053 - 95,133,939 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23101,031,977 - 101,319,820 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SRBD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11461,612,299 - 61,836,002 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1461,612,312 - 61,836,522 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604550,035,373 - 50,257,178 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Srbd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473826,830,682 - 27,077,955 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Srbd1
6418 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:151
Count of miRNA genes:137
Interacting mature miRNAs:143
Transcripts:ENSMUST00000095187
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1357447Heal13_mwound healing/regeneration 13 (mouse)Not determined175710765191107803Mouse
4141758Pstc5_mperiosteal circumference 5 (mouse)Not determined175710765191107803Mouse
4141011Bmd26_mbone mineral density 26 (mouse)Not determined175710765191107803Mouse
1300735Pgia20_mproteoglycan induced arthritis 20 (mouse)Not determined175710765191107803Mouse
12910536Nrq8a_mnoise-induced hearing loss resistant QTL 8a (mouse)175710765191107803Mouse
12910537Nrq8_mnoise-induced hearing loss resistant QTL 8 (mouse)175710765191107803Mouse
4142414Pregq4_mpregnancy QTL 4 (mouse)Not determined175753444793507179Mouse
4141040Hmtb9_mhemostasis and thrombosis rebleeding time 9 (mouse)Not determined5758908991589197Mouse
1301107Scc4_mcolon tumor susceptibility 4 (mouse)Not determined176230101095294699Mouse
11528551Sluc32_msusceptibility to lung cancer 32 (mouse)176230101095294699Mouse
1302017Aliq3_macute lung injury QTL 3 (mouse)Not determined176388554895294699Mouse
1301728Ffal1_mfree fatty acid level 1 (mouse)Not determined176521493895294699Mouse
14928308Manh82_mmandible shape 82 (mouse)176631524395294699Mouse
4142256Nilac12_mnicotine induced locomotor activity 12 (mouse)Not determined176894131995294699Mouse
11039500Ltpr7c_mLeishmania tropica response 7c (mouse)177070119895294699Mouse
11039498Ltpr7b_mLeishmania tropica response 7b (mouse)177070119895294699Mouse
11039499Ltpr7a_mLeishmania tropica response 7a (mouse)177070119895294699Mouse
11039514Ltpr7_mLeishmania tropica response 7 (mouse)177070119895294699Mouse
1357528Nhdlq3_mnon-HDL QTL 3 (mouse)Not determined177339513295294699Mouse
4141195Nilac11_mnicotine induced locomotor activity 11 (mouse)Not determined177339513295294699Mouse
4141697Hbnr3_mHeligmosomoides bakeri nematode resistance 3 (mouse)Not determined7410765193507179Mouse
1357646Axtq3_manxiety QTL 3 (mouse)Not determined177458908990395270Mouse
1357552Aaj4_manxiety in A/J 4 (mouse)Not determined177458908990395270Mouse
14697708Stsl5_mSalmonella typhimurium susceptibility locus 5 (mouse)178080742991407428Mouse

Markers in Region
RH127187  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381785,984,763 - 85,985,012UniSTSGRCm38
MGSCv371786,384,103 - 86,384,352UniSTSGRCm37
Celera1790,356,808 - 90,357,057UniSTS
Cytogenetic Map17E4UniSTS
Whitehead/MRC_RH171052.82UniSTS
D17Mit212  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381786,009,698 - 86,009,800UniSTSGRCm38
MGSCv371786,409,038 - 86,409,140UniSTSGRCm37
Celera1790,381,622 - 90,381,724UniSTS
Cytogenetic Map17E4UniSTS
cM Map1755.7UniSTS
Whitehead Genetic1749.2UniSTS
D17Mit212.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381786,009,801 - 86,009,949UniSTSGRCm38
MGSCv371786,409,141 - 86,409,289UniSTSGRCm37
Celera1790,381,725 - 90,381,873UniSTS
Cytogenetic Map17E4UniSTS
cM Map1755.7UniSTS
cM Map17 UniSTS
Whitehead_YAC17 UniSTS
AI461933  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381785,984,841 - 85,984,989UniSTSGRCm38
MGSCv371786,384,181 - 86,384,329UniSTSGRCm37
Celera1790,356,886 - 90,357,034UniSTS
Cytogenetic Map17E4UniSTS
Whitehead/MRC_RH171054.54UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_030133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011246728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011246730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011246731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017317728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_385394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC154185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC154542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK021298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC100359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC147429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC147430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC172066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC172071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000095187   ⟹   ENSMUSP00000092810
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1786,292,093 - 86,452,603 (-)Ensembl
GRCm38.p6 Ensembl1785,984,665 - 86,145,175 (-)Ensembl
RefSeq Acc Id: ENSMUST00000234595
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1786,365,102 - 86,427,699 (-)Ensembl
GRCm38.p6 Ensembl1786,057,674 - 86,120,271 (-)Ensembl
RefSeq Acc Id: ENSMUST00000234645
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1786,355,403 - 86,365,128 (-)Ensembl
GRCm38.p6 Ensembl1786,047,975 - 86,057,700 (-)Ensembl
RefSeq Acc Id: ENSMUST00000234682   ⟹   ENSMUSP00000157179
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1786,292,375 - 86,347,792 (-)Ensembl
GRCm38.p6 Ensembl1785,984,947 - 86,040,364 (-)Ensembl
RefSeq Acc Id: ENSMUST00000234761   ⟹   ENSMUSP00000157302
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1786,292,093 - 86,347,859 (-)Ensembl
GRCm38.p6 Ensembl1785,984,665 - 86,040,431 (-)Ensembl
RefSeq Acc Id: ENSMUST00000234951   ⟹   ENSMUSP00000157062
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1786,292,375 - 86,347,792 (-)Ensembl
GRCm38.p6 Ensembl1785,984,947 - 86,040,364 (-)Ensembl
RefSeq Acc Id: NM_030133   ⟹   NP_084409
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391786,292,093 - 86,452,603 (-)NCBI
GRCm381785,984,665 - 86,145,175 (-)NCBI
MGSCv371786,384,005 - 86,544,515 (-)RGD
Celera1790,356,710 - 90,517,663 (-)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011246728   ⟹   XP_011245030
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391786,292,093 - 86,452,644 (-)NCBI
GRCm381785,984,665 - 86,145,216 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011246730   ⟹   XP_011245032
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391786,398,681 - 86,452,644 (-)NCBI
GRCm381786,091,253 - 86,145,216 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011246731   ⟹   XP_011245033
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391786,292,093 - 86,427,680 (-)NCBI
GRCm381785,984,665 - 86,120,747 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017317728   ⟹   XP_017173217
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391786,346,900 - 86,452,644 (-)NCBI
GRCm381786,039,472 - 86,145,216 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160846   ⟹   XP_036016739
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391786,295,944 - 86,452,644 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160847   ⟹   XP_036016740
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391786,292,093 - 86,433,677 (-)NCBI
Sequence:
RefSeq Acc Id: XR_385394
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391786,292,093 - 86,452,644 (-)NCBI
GRCm381785,984,665 - 86,145,216 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_084409   ⟸   NM_030133
- UniProtKB: Q497V5 (UniProtKB/Swiss-Prot),   F8WGW3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011245030   ⟸   XM_011246728
- Peptide Label: isoform X1
- UniProtKB: Q497V5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011245033   ⟸   XM_011246731
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_011245032   ⟸   XM_011246730
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017173217   ⟸   XM_017317728
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSMUSP00000092810   ⟸   ENSMUST00000095187
RefSeq Acc Id: ENSMUSP00000157302   ⟸   ENSMUST00000234761
RefSeq Acc Id: ENSMUSP00000157062   ⟸   ENSMUST00000234951
RefSeq Acc Id: ENSMUSP00000157179   ⟸   ENSMUST00000234682
RefSeq Acc Id: XP_036016740   ⟸   XM_036160847
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036016739   ⟸   XM_036160846
- Peptide Label: isoform X2
- UniProtKB: Q497V5 (UniProtKB/Swiss-Prot)
Protein Domains
S1 motif

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q497V5-F1-model_v2 AlphaFold Q497V5 1-982 view protein structure

Promoters
RGD ID:13676922
Promoter ID:EPDNEW_M22610
Type:multiple initiation site
Name:Srbd1_1
Description:Mus musculus S1 RNA binding domain 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381786,145,157 - 86,145,217EPDNEW
RGD ID:6828714
Promoter ID:MM_KWN:24367
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:ENSMUST00000043323
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361786,541,471 - 86,541,971 (-)MPROMDB
RGD ID:6828718
Promoter ID:MM_KWN:24368
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   Liver,   MEF_B4,   MEF_B6
Transcripts:NM_030133,   UC008DUF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361786,544,021 - 86,544,842 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1925836 AgrOrtholog
Ensembl Genes ENSMUSG00000024135 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000095187 ENTREZGENE
  ENSMUST00000095187.4 UniProtKB/TrEMBL
  ENSMUST00000234682.2 UniProtKB/TrEMBL
  ENSMUST00000234761.2 UniProtKB/TrEMBL
  ENSMUST00000234951.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.650 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.10.3500.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.40.50.140 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.420.140 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tex RuvX-like domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro HHH_9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NA-bd_OB-fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNaseH-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RuvA_2-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S1_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S1_Tex UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tex-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tex-like_HTH_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tex-like_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tex_YqgF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  YqgF/RNaseH-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  YqgF/RNaseH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:78586 UniProtKB/TrEMBL
MGD MGI:1925836 ENTREZGENE
NCBI Gene 78586 ENTREZGENE
PANTHER 30S RIBOSOMAL PROTEIN S1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S1 RNA-BINDING DOMAIN-CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam HHH_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HHH_9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00575 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tex_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tex_YqgF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Srbd1 PhenoGen
PROSITE PS50126 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00316 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  YqgFc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47781 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50249 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF53098 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tex N-terminal region-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B7ZWI4_MOUSE UniProtKB/TrEMBL
  B7ZWI7_MOUSE UniProtKB/TrEMBL
  F8WGW3 ENTREZGENE, UniProtKB/TrEMBL
  Q497V5 ENTREZGENE
  Q8CHZ0_MOUSE UniProtKB/TrEMBL
  Q9CRK2_MOUSE UniProtKB/TrEMBL
  SRBD1_MOUSE UniProtKB/Swiss-Prot