Gm527 (predicted gene 527) - Rat Genome Database

Name: Gm527
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Gm527 (predicted gene 527) Mus musculus

Analyze

Symbol:

Gm527

Name:

predicted gene 527

RGD ID:

1619865

MGI Page

MGI

Description:

Orthologous to human C14orf28 (chromosome 14 open reading frame 28).

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

hypothetical protein LOC217648; MGC117765; uncharacterized protein C14orf28 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	64,964,685 - 64,971,365 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	64,964,680 - 64,971,366 (+)	Ensembl		GRCm39 Ensembl
GRCm38	12	64,917,911 - 64,924,591 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	64,917,906 - 64,924,592 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	66,018,898 - 66,025,578 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	65,836,516 - 65,843,196 (+)	NCBI		MGSCv36	mm8
Celera	12	66,050,413 - 66,054,197 (+)	NCBI		Celera
Cytogenetic Map	12	C1	NCBI
cM Map	12	27.21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Brain-Lung-Thyroid Syndrome (ISO)

Fanconi anemia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

17beta-estradiol (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,3,7,8-Tetrachlorodibenzofuran (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bisphenol A (ISO)

butanal (ISO)

copper atom (ISO)

copper(0) (ISO)

cyclosporin A (ISO)

dibutyl phthalate (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

ethyl methanesulfonate (ISO)

formaldehyde (ISO)

furan (ISO)

gentamycin (ISO)

GW 1929 (ISO)

iron dichloride (ISO)

methyl methanesulfonate (ISO)

nickel atom (ISO)

p-chloromercuribenzoic acid (ISO)

phenylmercury acetate (ISO)

potassium chloride (ISO)

quercetin (ISO)

SB 431542 (ISO)

thioacetamide (ISO)

trichostatin A (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

Molecular Function

molecular_function (ND)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15489334	PMID:37248637

Genomics

Comparative Map Data

Gm527
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	64,964,685 - 64,971,365 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	64,964,680 - 64,971,366 (+)	Ensembl		GRCm39 Ensembl
GRCm38	12	64,917,911 - 64,924,591 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	64,917,906 - 64,924,592 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	66,018,898 - 66,025,578 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	65,836,516 - 65,843,196 (+)	NCBI		MGSCv36	mm8
Celera	12	66,050,413 - 66,054,197 (+)	NCBI		Celera
Cytogenetic Map	12	C1	NCBI
cM Map	12	27.21	NCBI

C14orf28
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	44,897,275 - 44,907,257 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	44,897,275 - 44,907,257 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	45,366,478 - 45,376,460 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	44,436,257 - 44,446,210 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	14	25,227,762 - 25,237,715 (+)	NCBI		Celera
Cytogenetic Map	14	q21.2	NCBI
HuRef	14	25,477,418 - 25,487,371 (+)	NCBI		HuRef
CHM1_1	14	45,304,736 - 45,314,689 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	39,089,234 - 39,099,216 (+)	NCBI		T2T-CHM13v2.0

C6h14orf28
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	88,701,651 - 88,710,204 (+)	NCBI		GRCr8
mRatBN7.2	6	82,965,304 - 82,973,942 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	82,965,328 - 82,972,558 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	83,325,212 - 83,332,215 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	83,624,575 - 83,631,578 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	83,066,308 - 83,073,315 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	86,651,196 - 86,659,371 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	86,651,196 - 86,659,371 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	96,145,979 - 96,155,042 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	86,256,155 - 86,263,086 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	86,262,235 - 86,266,292 (+)	NCBI
Celera	6	81,533,197 - 81,540,085 (+)	NCBI		Celera
Cytogenetic Map	6	q24	NCBI

CUNH14orf28
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955409	17,012,125 - 17,024,784 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955409	17,014,194 - 17,023,953 (-)	NCBI	ChiLan1.0	ChiLan1.0

C15H14orf28
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	46,070,659 - 46,080,698 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	45,287,154 - 45,297,194 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	25,514,741 - 25,524,710 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	43,843,018 - 43,852,917 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	43,843,018 - 43,852,917 (+)	Ensembl	panpan1.1		panPan2

C8H14orf28
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	22,366,822 - 22,378,411 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	22,369,790 - 22,375,025 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	22,184,834 - 22,196,392 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	22,525,913 - 22,537,473 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	22,526,893 - 22,535,764 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	22,188,391 - 22,199,954 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	22,254,701 - 22,266,253 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	22,590,803 - 22,602,360 (+)	NCBI		UU_Cfam_GSD_1.0

CUNH14orf28
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	54,323,411 - 54,333,350 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936583	4,355,492 - 4,363,107 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936583	4,355,562 - 4,365,470 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C1H14orf28
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	175,145,913 - 175,156,606 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	175,145,918 - 175,156,597 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	194,910,933 - 194,921,563 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CUNH14orf28
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	22,015,251 - 22,026,008 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	22,015,206 - 22,026,001 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666116	513,820 - 524,488 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CUNH14orf28
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624731	23,595,490 - 23,605,374 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Gm527
196 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	117
Count of miRNA genes:	101
Interacting mature miRNAs:	111
Transcripts:	ENSMUST00000058135
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4142234	Tmc1m3_m	Tmc1 modifier 3 (mouse)			Not determined		12	5418440	77031203	Mouse
27226753	Femd7_m	femur midshaft diameter 7, 10 week (mouse)					12	9550000	84146774	Mouse
13207568	Tcq14_m	total cholesterol QTL 14 (mouse)					12	11660001	97176774	Mouse
1558978	Cplaq10_m	circadian period of locomotor activity 10 (mouse)			Not determined		12	15341026	79040364	Mouse
1301574	Lmblgq5_m	limb length QTL 5 (mouse)			Not determined		12	17596447	80956883	Mouse
10402492	Dipa8_m	drug induced psychomotor activation 8 (mouse)			Not determined		12	34933872	68934019	Mouse
1300818	Bbaa10_m	B.burgdorferi-associated arthritis 10 (mouse)			Not determined		12	35091004	65511019	Mouse
4142002	Tbqt3_m	tibia bone quality traits 3 (mouse)			Not determined		12	35285496	109936243	Mouse
1357479	Splwt1_m	spleen weight 1 (mouse)			Not determined		12	41693175	90887526	Mouse
1357757	Lnopy2_m	lens opacity 2 (mouse)			Not determined		12	52846626	86846796	Mouse
1357749	Vtbt13_m	vertebral trabecular bone trait 13 (mouse)			Not determined		12	53132002	87132145	Mouse
12832727	Ahrq1_m	airway hyperresponsiveness QTL 1 (mouse)					12	54695910	82665939	Mouse
13504832	Bacszq2_m	baculum size QTL 2 (mouse)					12	56945798	75345787	Mouse
27226728	Tibl20_m	tibia length 20, 16 week (mouse)					12	59146786	93866774	Mouse
27226776	Tibl6_m	tibia length 6, 5 week (mouse)					12	60646786	92666774	Mouse
10043948	Pbft6_m	percent body fat 6 (mouse)			Not determined		12	61205427	95205427	Mouse
1301476	Pbwg12_m	postnatal body weight growth 12 (mouse)			Not determined		12	62040164	96040364	Mouse
27226797	Scvln19_m	sacral vertebrae length 2, 16 week (mouse)					12	62146786	99466259	Mouse
10043895	Bw20_m	body weight QTL 20 (mouse)			Not determined		12	62308252	96308252	Mouse
1301046	Par3_m	pulmonary adenoma resistance 3 (mouse)			Not determined		12	63956708	97956883	Mouse
1301337	Cdcs8_m	cytokine deficiency colitis susceptibility 8 (mouse)			Not determined		12	64689083	98689229	Mouse
1300633	Cdcs7_m	cytokine deficiency colitis susceptibility 7 (mouse)			Not determined		12	64689083	98689229	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001025605	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC099503	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466526	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CT030241	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000058135 ⟹ ENSMUSP00000059435

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	64,964,680 - 64,971,365 (+)	Ensembl
GRCm38.p6 Ensembl	12	64,917,906 - 64,924,591 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000220928

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	64,969,513 - 64,971,366 (+)	Ensembl
GRCm38.p6 Ensembl	12	64,922,739 - 64,924,592 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000220993 ⟹ ENSMUSP00000152672

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	64,964,743 - 64,971,140 (+)	Ensembl
GRCm38.p6 Ensembl	12	64,917,969 - 64,924,366 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000223388 ⟹ ENSMUSP00000152061

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	12	64,967,558 - 64,970,415 (+)	Ensembl
GRCm38.p6 Ensembl	12	64,920,784 - 64,923,641 (+)	Ensembl

RefSeq Acc Id:

NM_001025605 ⟹ NP_001020776

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	12	64,964,685 - 64,971,365 (+)	NCBI
GRCm38	12	64,917,911 - 64,924,591 (+)	ENTREZGENE
MGSCv37	12	66,018,898 - 66,025,578 (+)	RGD
Celera	12	66,050,413 - 66,054,197 (+)	RGD
cM Map	12		ENTREZGENE

Sequence:

show sequence

GGCCCGCGGAATCCTGCTCCGTAACAAGCGACGCGCCGCGCCCCGCGGTCCCGGCTGCGTGGGC
CGCTCGGGTGGGGCTGGGCGCTGCGGCTGCGGTGGCTCCCGCCGCGGCGGGCGCGATGGAGGCC
GTGCCGGAGGCCCGCACGCTCGCCGGGGCTGGCCGAGGCAGCCGGAGGAGCTGGTAGATGCGGC
GGCCACGGCGGCGGCGGCCCGGGCTCTCCATGAGCGAGCGGCGGCGGCGACGGGTGCGGCGGCA
CCGGCGGTCTTCGGTCCCGCGGGAGGATGAAGACACTGTTTGAAGAGATCAAAGCATCAATTAA
AAATAACTATAACCAAGATCGATCATTTTGGAGGCCTGTTCTTCCTTGGGGAGGAGTTTTTACT
ATCAAAGCTGGCCGCAAAGCAGTATCTTGTACACCCCTCTATGTTGAGATCAGACTGAAAAATA
CCTGCACCATAGATGGATTCTTGATGTTACTGTATGTCATTCTTAATGAAAACGAAAGCTTCCC
CAGGGAACTCTCTCTGCATTTTGGCCGGGAGTTTGTCGACTGTTTTCTTTATTTAATGGACACC
TATAGTTTTACAACTGTGAAGCTGCTTTGGATTTGGGACAAGATGGAAAAACAGCAATACAAAT
CTGAAGTTCATAAAGCTTCATTAGTAATTGATTTGTTTGGGAACGAGCATGATAATTTTACAAA
AAATCTTGAAAATCTTATGTCTACCATTCAAGGGAGTTACTGCTCTAACTGGCACTGCCCTACC
CGAGTGCAGGAAGATCAGCAGCGCACCATTAGCATAAATCCTCCCCAAGAAATTCCACATGGAA
ACTTGATACGACTGGCTGTGGATGAGTTATTCTGTTCCAAGATTGAACTTTGTGAAGAGCGTGG
GTGTGGTGGCTTAAGAGAATTTTCCCAGCGAGTTTTCTGCCACGGGGCACCCCCTTTTGTTGTG
TTAAATATGCAGCATTGGAAACCTGAAGACCTGGCATATGTACCCTATTACTTGGATTTATCTG
ATCACAAATATTTGCTGGAAGGCGCCACTTTATTTAACAAAGAGGAGCATCATTATTCTGCAGC
CTTCCAGATTGACGGACATTGGATGCACTATGATGGCCTCAGAAATGTGAATTTAATTTTGTTA
AATAAACCCCCAGAGTTTCTCCTCTTGTCATCATTGGTTTATATTCGAGCAACAGAGAAATAAA
TATAGACTGATGCTGAATTAAATTGTTCTCCCGCCTGCCCATGCTCCCAGATGAAGGGCTTTTG
TTCTGTATATACTTGGTATCCAAGGAAACAGTTGAACTATACTAGTTTCAGAGATGTATTTTTC
ATTGTTTTGCCCCAGGTAAATGTTTTATATGGATGATCTATGCAAAAAATGTATTTTTAAAGTA
TTTTCTGGGTTATTTTTATACAAGCATATGTTATGTTCAATAAAATGTATCTCGTAAAAAAAAA
AAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001020776	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH99503	(Get FASTA)	NCBI Sequence Viewer
	EDL36655	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000059435
	ENSMUSP00000059435.5
	ENSMUSP00000152061.2
	ENSMUSP00000152672.2
GenBank Protein	Q4KL13	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001020776 ⟸ NM_001025605

- UniProtKB:

Q4KL13 (UniProtKB/Swiss-Prot), A0A1Y7VME2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKTLFEEIKASIKNNYNQDRSFWRPVLPWGGVFTIKAGRKAVSCTPLYVEIRLKNTCTIDGFLM
LLYVILNENESFPRELSLHFGREFVDCFLYLMDTYSFTTVKLLWIWDKMEKQQYKSEVHKASLV
IDLFGNEHDNFTKNLENLMSTIQGSYCSNWHCPTRVQEDQQRTISINPPQEIPHGNLIRLAVDE
LFCSKIELCEERGCGGLREFSQRVFCHGAPPFVVLNMQHWKPEDLAYVPYYLDLSDHKYLLEGA
TLFNKEEHHYSAAFQIDGHWMHYDGLRNVNLILLNKPPEFLLLSSLVYIRATEK

hide sequence

RefSeq Acc Id:

ENSMUSP00000152061 ⟸ ENSMUST00000223388

RefSeq Acc Id:

ENSMUSP00000059435 ⟸ ENSMUST00000058135

RefSeq Acc Id:

ENSMUSP00000152672 ⟸ ENSMUST00000220993

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q4KL13-F1-model_v2	AlphaFold	Q4KL13	1-310	view protein structure

Promoters

RGD ID:

8678362

Promoter ID:

EPDNEW_M17211

Type:

multiple initiation site

Name:

Gm527_1

Description:

Mus musculus predicted gene 527 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	12	64,917,848 - 64,917,908	EPDNEW

RGD ID:

6822998

Promoter ID:

MM_KWN:11759

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Kidney, Lung

Transcripts:

NM_001025605

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	12	66,018,646 - 66,019,146 (+)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:2685373	AgrOrtholog
Ensembl Genes	ENSMUSG00000047227	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000058135	ENTREZGENE
	ENSMUST00000058135.6	UniProtKB/Swiss-Prot
	ENSMUST00000220993.2	UniProtKB/TrEMBL
	ENSMUST00000223388.2	UniProtKB/TrEMBL
InterPro	C14orf28-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:217648	UniProtKB/Swiss-Prot
MGD	MGI:2685373	ENTREZGENE
NCBI Gene	217648	ENTREZGENE
PANTHER	HYPOTHETICAL LOC314168	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR35350	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Gm527	PhenoGen
UniProt	A0A1Y7VKP1_MOUSE	UniProtKB/TrEMBL
	A0A1Y7VME2	ENTREZGENE, UniProtKB/TrEMBL
	CN028_MOUSE	UniProtKB/Swiss-Prot, ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar