4930474N05Rik (RIKEN cDNA 4930474N05 gene) - Rat Genome Database

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Gene: 4930474N05Rik (RIKEN cDNA 4930474N05 gene) Mus musculus
Analyze
No known orthologs.
Symbol: 4930474N05Rik
Name: RIKEN cDNA 4930474N05 gene
RGD ID: 1619862
MGI Page MGI
Description: Acts upstream of or within hematopoietic progenitor cell differentiation.
Type: protein-coding
RefSeq Status: PREDICTED
Previously known as: hypothetical protein LOC218921; uncharacterized protein LOC218921
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391435,816,899 - 35,819,358 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1435,816,874 - 35,822,071 (+)EnsemblGRCm39 Ensembl
GRCm381436,094,942 - 36,097,401 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1436,094,917 - 36,100,114 (+)EnsemblGRCm38mm10GRCm38
MGSCv371436,908,151 - 36,910,041 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361434,924,454 - 34,926,344 (+)NCBIMGSCv36mm8
Celera1432,306,606 - 32,308,500 (+)NCBICelera
Cytogenetic Map14BNCBI
cM Map1420.88NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:24029230  


Genomics

Variants

.
Variants in 4930474N05Rik
47 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:110
Count of miRNA genes:107
Interacting mature miRNAs:110
Transcripts:ENSMUST00000177985
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301991Wta3_mweight adult 3 (mouse)Not determined14388747337887650Mouse
4141550Dbm3_mdiabetes modifier 3 (mouse)Not determined514347339143596Mouse
4141864Mrdq4_mmodifier of retinal degeneration QTL 4 (mouse)Not determined992324548765082Mouse
1300779Dyscalc4_mdystrophic cardiac calcinosis 4 (mouse)Not determined141221287146213007Mouse
27226748Femd8_mfemur midshaft diameter 8, 10 week (mouse)141376927346737457Mouse
27226752Femd4_mfemur midshaft diameter 4, 5 week (mouse)141376927347237457Mouse
1300544Hypn_mhyperinsulinemia (mouse)Not determined141516061649160765Mouse
1301372Sluc13_msusceptibility to lung cancer 13 (mouse)Not determined141882760452827726Mouse
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
27226775Tibl7_mtibia length 7, 5 week (mouse)143032195748837457Mouse
27226744Metcl6_mmetatarsal-calcaneal length 6, 5 week (mouse)143032195752937457Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
27226727Tibl21_mtibia length 21, 16 week (mouse)143412195752937457Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse

Markers in Region
Avpr1b  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10D1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map18D3UniSTS
Cytogenetic MapXF1UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map13B2UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map7F2UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map10D2UniSTS
Cytogenetic Map10B5.1UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic MapXA1.1UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map18B3UniSTS
cM Map1 UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000177985   ⟹   ENSMUSP00000136756
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1435,816,926 - 35,818,746 (+)Ensembl
GRCm38.p6 Ensembl1436,094,969 - 36,096,789 (+)Ensembl
RefSeq Acc Id: ENSMUST00000186722   ⟹   ENSMUSP00000139748
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1435,816,924 - 35,822,071 (+)Ensembl
GRCm38.p6 Ensembl1436,094,967 - 36,100,114 (+)Ensembl
RefSeq Acc Id: ENSMUST00000226305   ⟹   ENSMUSP00000153709
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1435,816,874 - 35,820,238 (+)Ensembl
GRCm38.p6 Ensembl1436,094,917 - 36,098,281 (+)Ensembl
RefSeq Acc Id: NM_175008   ⟹   NP_778173
RefSeq Status: PREDICTED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391435,816,922 - 35,818,812 (+)NCBI
GRCm381436,094,965 - 36,096,855 (+)NCBI
MGSCv371436,908,151 - 36,910,041 (+)RGD
Celera1432,306,606 - 32,308,500 (+)RGD
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006518825   ⟹   XP_006518888
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391435,816,899 - 35,819,358 (+)NCBI
GRCm381436,094,942 - 36,097,401 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_778173   ⟸   NM_175008
- UniProtKB: Q8BVR5 (UniProtKB/TrEMBL),   Q3V0R1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006518888   ⟸   XM_006518825
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000136756   ⟸   ENSMUST00000177985
RefSeq Acc Id: ENSMUSP00000139748   ⟸   ENSMUST00000186722
RefSeq Acc Id: ENSMUSP00000153709   ⟸   ENSMUST00000226305
Protein Domains
N-terminal Ras-GEF

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BVR5-F1-model_v2 AlphaFold Q8BVR5 1-218 view protein structure

Promoters
RGD ID:8681948
Promoter ID:EPDNEW_M19005
Type:single initiation site
Name:4930474N05Rik_1
Description:Mus musculus RIKEN cDNA 4930474N05 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381436,094,967 - 36,095,027EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3586330 AgrOrtholog
Ensembl Genes ENSMUSG00000096405 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000177985.4 UniProtKB/TrEMBL
  ENSMUST00000186722.2 UniProtKB/TrEMBL
  ENSMUST00000226305 ENTREZGENE
  ENSMUST00000226305.2 UniProtKB/TrEMBL
Gene3D-CATH Son of sevenless (SoS) protein Chain: S domain 1 UniProtKB/TrEMBL
InterPro Ras-like_Gua-exchang_fac_N UniProtKB/TrEMBL
  Ras_GEF_dom UniProtKB/TrEMBL
KEGG Report mmu:218921 UniProtKB/TrEMBL
MGD MGI:3586330 ENTREZGENE
NCBI Gene 218921 ENTREZGENE
PANTHER 1700018F24RIK PROTEIN-RELATED UniProtKB/TrEMBL
  1700018F24RIK PROTEIN-RELATED-RELATED UniProtKB/TrEMBL
Pfam RasGEF_N UniProtKB/TrEMBL
PhenoGen 4930474N05Rik PhenoGen
PROSITE RASGEF_NTER UniProtKB/TrEMBL
SMART RasGEFN UniProtKB/TrEMBL
Superfamily-SCOP Ras_GEF UniProtKB/TrEMBL
UniProt Q3V0P0_MOUSE UniProtKB/TrEMBL
  Q3V0R1 ENTREZGENE, UniProtKB/TrEMBL
  Q8BVR5 ENTREZGENE, UniProtKB/TrEMBL