Gm5149 (predicted gene 5149) - Rat Genome Database

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Gene: Gm5149 (predicted gene 5149) Mus musculus
Analyze
Symbol: Gm5149
Name: predicted gene 5149
RGD ID: 1619676
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: EG381483; Gm42649; predicted gene, EG381483
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393149,037,883 - 149,046,274 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3149,010,466 - 149,051,477 (+)EnsemblGRCm39 Ensembl
GRCm383149,332,246 - 149,340,637 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3149,304,829 - 149,345,840 (+)EnsemblGRCm38mm10GRCm38
MGSCv373148,967,793 - 149,008,804 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363149,242,215 - 149,283,226 (+)NCBIMGSCv36mm8
Celera3155,804,059 - 155,809,042 (+)NCBICelera
Cytogenetic Map3H3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in Gm5149
331 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226733Tibmd6_mtibia midshaft diameter 6, 16 week (mouse)3101307316149805637Mouse
10043919Afpq8_mabdominal fat percent QTL 8 (mouse)Not determined3119057332153057456Mouse
1558868Ses9_msalmonella enteritidis susceptibility 9 (mouse)Not determined3119057332153057456Mouse
4141935Tgq15_mtriglyceride QTL 15 (mouse)Not determined119318586153318586Mouse
4142449Tgq14_mtriglyceride QTL 14 (mouse)Not determined119318586153318586Mouse
1302151Lprm2_mlymphoproliferation modifier 2 (mouse)Not determined3119778857153779044Mouse
10412240Alpq6_malcohol preference QTL 6 (mouse)Not determined3120772078154772078Mouse
4142245Pstc1_mperiosteal circumference 1 (mouse)Not determined3126270248159745316Mouse
1301218Letohc1_mlow ethanol consumption 1 (mouse)Not determined3126352986159745316Mouse
1301347Fpli_mfasting plasma insulin (mouse)Not determined3126460514159745316Mouse
1301563Alcp3_malcohol preference locus 3 (mouse)Not determined3130736935159745316Mouse
11039523Tbbr1_mTrypanosoma brucei brucei response 1 (mouse)3130849375159745316Mouse
1301528Loco1_mlocomotor activity 1 (mouse)Not determined3133461893159745316Mouse
1301222Scc7_mcolon tumor susceptibility 7 (mouse)Not determined3143352986156364108Mouse
25394566Skmw51_mskeletal muscle weight 51, gastroc (mouse)3146006623150688104Mouse
25394560Skmw52_mskeletal muscle weight 52, TA (mouse)3147738953151045666Mouse
10045615Hrtfm8_mheart failure modifier 8 (mouse)Not determined3148451045152592311Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000199768
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3149,040,483 - 149,042,743 (+)Ensembl
GRCm38.p6 Ensembl3149,334,846 - 149,337,106 (+)Ensembl
RefSeq Acc Id: ENSMUST00000199980
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3149,010,466 - 149,051,477 (+)Ensembl
GRCm38.p6 Ensembl3149,304,829 - 149,345,840 (+)Ensembl
RefSeq Acc Id: XR_003954585
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393149,040,497 - 149,046,274 (+)NCBI
GRCm383149,334,860 - 149,340,637 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003954586
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393149,037,883 - 149,046,274 (+)NCBI
GRCm383149,332,246 - 149,340,637 (+)NCBI
Sequence:
RefSeq Acc Id: XR_376228
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393149,040,497 - 149,046,274 (+)NCBI
GRCm383149,334,860 - 149,340,637 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein BAE21373 (Get FASTA)   NCBI Sequence Viewer  
  EDL11949 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences

Promoters
RGD ID:15092638
Promoter ID:EPDNEWNC_M557
Type:multiple initiation site
Name:Gm5149_1
Description:predicted gene 5149 [Source:MGI Symbol;Acc:MGI:3648405]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383149,334,861 - 149,334,921EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000105797 Ensembl
MGD MGI:3648405 ENTREZGENE
NCBI Gene 381483 ENTREZGENE
PhenoGen Gm5149 PhenoGen
UniProt Q3V0Y0_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-04 Gm5149  predicted gene 5149  EG381483  predicted gene, EG381483  Symbol and/or name change 5135510 APPROVED