Gm6999 (predicted gene 6999) - Rat Genome Database

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Gene: Gm6999 (predicted gene 6999) Mus musculus
Analyze
Symbol: Gm6999
Name: predicted gene 6999
RGD ID: 1619503
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: E130119H08; EG629734; predicted gene, EG629734
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391480,128,412 - 80,221,576 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1480,074,152 - 80,243,766 (+)EnsemblGRCm39 Ensembl
GRCm381479,890,972 - 79,984,136 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1479,836,712 - 80,006,326 (+)EnsemblGRCm38mm10GRCm38
MGSCv371480,288,050 - 80,358,533 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361478,570,867 - 78,692,881 (+)NCBIMGSCv36mm8
Celera1477,391,288 - 77,479,334 (+)NCBICelera
Cytogenetic Map14D3NCBI
cM Map1442.76NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in Gm6999
2642 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:42
Count of miRNA genes:42
Interacting mature miRNAs:42
Transcripts:ENSMUST00000180427
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145393744087937440Mouse
10043889Cia52_mcollagen induced arthritis QTL 52 (mouse)Not determined145608238190082509Mouse
1301562Hwq1_mheart weight quantitative locus 1 (mouse)Not determined145654674590546941Mouse
1357565wrmod1_mwobbler modifier 1 (mouse)Not determined1458179640101859473Mouse
11039527Ccc2_mcolitis susceptibility in the Collaborative Cross 2 (mouse)145991861294138217Mouse
1300666Fembm2_mfemoral bone morphometry 2 (mouse)Not determined146239746096397680Mouse
14747006Mancz12_mmandible centroid size 12 (mouse)1470071977104071977Mouse
10054475Ossc3_mosteosarcoma susceptibility 3 (mouse)Not determined1470863768104863926Mouse
1300551Lprm3_mlymphoproliferation modifier 3 (mouse)Not determined1471221224105221344Mouse
1301844Pgia29_mproteoglycan induced arthritis 29 (mouse)Not determined1474352296108352384Mouse
1558819Ossc2_mosteosarcoma susceptibility 2 (mouse)Not determined1474394976108395093Mouse
14928314Manh77_mmandible shape 77 (mouse)1476767790110767790Mouse
1558823Tbbmd6_mtotal body bone mineral density 6 (mouse)Not determined1477073696111073787Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_001781405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001781406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004938563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_383643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_383653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_874850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_874851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_874852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_874853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_874854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_874856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_874857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_874858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_874860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_874861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_874862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_874863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_874864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC121960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC146609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC151973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000180427
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1480,074,152 - 80,196,166 (+)Ensembl
GRCm38.p6 Ensembl1479,836,712 - 79,958,726 (+)Ensembl
RefSeq Acc Id: ENSMUST00000227982
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1480,128,437 - 80,135,755 (+)Ensembl
GRCm38.p6 Ensembl1479,890,997 - 79,898,315 (+)Ensembl
RefSeq Acc Id: ENSMUST00000232826
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1480,210,410 - 80,215,538 (+)Ensembl
GRCm38.p6 Ensembl1479,972,970 - 79,978,098 (+)Ensembl
RefSeq Acc Id: ENSMUST00000232869
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1480,128,486 - 80,243,766 (+)Ensembl
GRCm38.p6 Ensembl1479,891,046 - 80,006,326 (+)Ensembl
RefSeq Acc Id: ENSMUST00000233773
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1480,128,511 - 80,213,595 (+)Ensembl
GRCm38.p6 Ensembl1479,891,071 - 79,976,155 (+)Ensembl
RefSeq Acc Id: XR_001781405
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391480,128,412 - 80,221,576 (+)NCBI
GRCm381479,890,972 - 79,984,136 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001781406
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391480,128,412 - 80,221,576 (+)NCBI
GRCm381479,890,972 - 79,984,136 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004938563
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391480,128,412 - 80,221,576 (+)NCBI
Sequence:
RefSeq Acc Id: XR_383643
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391480,209,872 - 80,221,576 (+)NCBI
GRCm381479,972,432 - 79,984,136 (+)NCBI
Sequence:
RefSeq Acc Id: XR_383653
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391480,128,412 - 80,155,750 (+)NCBI
GRCm381479,890,972 - 79,918,310 (+)NCBI
Sequence:
RefSeq Acc Id: XR_874850
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391480,128,412 - 80,221,576 (+)NCBI
GRCm381479,890,972 - 79,984,136 (+)NCBI
Sequence:
RefSeq Acc Id: XR_874851
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391480,128,412 - 80,221,576 (+)NCBI
GRCm381479,890,972 - 79,984,136 (+)NCBI
Sequence:
RefSeq Acc Id: XR_874852
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391480,128,412 - 80,221,576 (+)NCBI
GRCm381479,890,972 - 79,984,136 (+)NCBI
Sequence:
RefSeq Acc Id: XR_874853
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391480,128,412 - 80,221,576 (+)NCBI
GRCm381479,890,972 - 79,984,136 (+)NCBI
Sequence:
RefSeq Acc Id: XR_874854
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391480,128,412 - 80,221,576 (+)NCBI
GRCm381479,890,972 - 79,984,136 (+)NCBI
Sequence:
RefSeq Acc Id: XR_874856
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391480,128,412 - 80,221,576 (+)NCBI
GRCm381479,890,972 - 79,984,136 (+)NCBI
Sequence:
RefSeq Acc Id: XR_874857
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391480,128,412 - 80,221,576 (+)NCBI
GRCm381479,890,972 - 79,984,136 (+)NCBI
Sequence:
RefSeq Acc Id: XR_874858
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391480,128,412 - 80,221,576 (+)NCBI
GRCm381479,890,972 - 79,984,136 (+)NCBI
Sequence:
RefSeq Acc Id: XR_874860
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391480,128,412 - 80,221,576 (+)NCBI
GRCm381479,890,972 - 79,984,136 (+)NCBI
Sequence:
RefSeq Acc Id: XR_874861
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391480,168,820 - 80,221,576 (+)NCBI
GRCm381479,931,380 - 79,984,136 (+)NCBI
Sequence:
RefSeq Acc Id: XR_874862
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391480,128,412 - 80,202,443 (+)NCBI
GRCm381479,890,972 - 79,965,003 (+)NCBI
Sequence:
RefSeq Acc Id: XR_874863
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391480,128,412 - 80,221,576 (+)NCBI
GRCm381479,890,972 - 79,984,136 (+)NCBI
Sequence:
RefSeq Acc Id: XR_874864
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391480,128,412 - 80,221,576 (+)NCBI
GRCm381479,890,972 - 79,984,136 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein BAE22648 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences

Promoters
RGD ID:15094493
Promoter ID:EPDNEWNC_M2397
Type:multiple initiation site
Name:Gm6999_1
Description:predicted gene 6999 [Source:MGI Symbol;Acc:MGI:3647443]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381479,891,098 - 79,891,158EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000097927 Ensembl
MGD MGI:3647443 ENTREZGENE
NCBI Gene Gm6999 ENTREZGENE
PhenoGen Gm6999 PhenoGen
UniProt Q3UXB5_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-12 Gm6999  predicted gene 6999  EG629734  predicted gene, EG629734  Symbol and/or name change 5135510 APPROVED