Ncaph2 (non-SMC condensin II complex, subunit H2) - Rat Genome Database

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Gene: Ncaph2 (non-SMC condensin II complex, subunit H2) Mus musculus
Analyze
Symbol: Ncaph2
Name: non-SMC condensin II complex, subunit H2
RGD ID: 1619218
MGI Page MGI
Description: Predicted to enable chromatin binding activity. Involved in meiotic chromosome condensation; nuclear chromosome segregation; and regulation of chromosome segregation. Acts upstream of or within T cell differentiation in thymus. Located in condensed nuclear chromosome. Part of condensin complex. Is active in chromosome and nucleus. Is expressed in embryo. Orthologous to human NCAPH2 (non-SMC condensin II complex subunit H2).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: 0610010J20Rik; 2610524G04Rik; AI255179; condensin-2 complex subunit H2; D15Ertd785; D15Ertd785e; Kleisin beta; kleisin-beta; MGC6766; non-SMC condensin II complex subunit H2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm7535   Gm8363  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391589,239,920 - 89,257,030 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1589,239,922 - 89,257,029 (+)EnsemblGRCm39 Ensembl
GRCm381589,355,719 - 89,372,850 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1589,355,719 - 89,372,826 (+)EnsemblGRCm38mm10GRCm38
MGSCv371589,186,153 - 89,203,259 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361589,183,539 - 89,200,593 (+)NCBIMGSCv36mm8
Celera1591,484,861 - 91,501,969 (+)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1544.84NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:16602821   PMID:17268547   PMID:17640884   PMID:17967808   PMID:18287559   PMID:18397266   PMID:18799693   PMID:21169989   PMID:21267068   PMID:21677750  
PMID:21795393   PMID:21873635   PMID:22333158   PMID:22922362   PMID:25474630   PMID:25961503   PMID:27737959   PMID:27737961   PMID:30973865   PMID:34321999   PMID:34850681   PMID:35736539  


Genomics

Comparative Map Data
Ncaph2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391589,239,920 - 89,257,030 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1589,239,922 - 89,257,029 (+)EnsemblGRCm39 Ensembl
GRCm381589,355,719 - 89,372,850 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1589,355,719 - 89,372,826 (+)EnsemblGRCm38mm10GRCm38
MGSCv371589,186,153 - 89,203,259 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361589,183,539 - 89,200,593 (+)NCBIMGSCv36mm8
Celera1591,484,861 - 91,501,969 (+)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1544.84NCBI
NCAPH2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382250,508,224 - 50,524,780 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2250,508,224 - 50,524,780 (+)EnsemblGRCh38hg38GRCh38
GRCh372250,946,653 - 50,963,209 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362249,293,511 - 49,308,782 (+)NCBINCBI36Build 36hg18NCBI36
Celera2234,822,672 - 34,839,236 (+)NCBICelera
Cytogenetic Map22q13.33NCBI
HuRef2233,837,777 - 33,854,227 (+)NCBIHuRef
CHM1_12250,905,383 - 50,921,946 (+)NCBICHM1_1
T2T-CHM13v2.02251,018,752 - 51,035,345 (+)NCBIT2T-CHM13v2.0
Ncaph2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87122,302,550 - 122,319,570 (+)NCBIGRCr8
mRatBN7.27120,422,926 - 120,439,942 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7120,422,956 - 120,439,938 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7122,173,646 - 122,191,436 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07124,399,800 - 124,417,590 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07124,362,467 - 124,380,299 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07130,326,597 - 130,343,655 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7130,326,600 - 130,342,493 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07130,011,904 - 130,028,836 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47127,650,768 - 127,666,461 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7116,890,045 - 116,911,675 (+)NCBICelera
Cytogenetic Map7q34NCBI
Ncaph2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541333,492,348 - 33,503,804 (+)NCBIChiLan1.0ChiLan1.0
NCAPH2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22360,428,408 - 60,444,629 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12263,119,266 - 63,134,153 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02230,754,994 - 30,771,103 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12249,872,496 - 49,881,027 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2249,873,223 - 49,881,027 (+)Ensemblpanpan1.1panPan2
NCAPH2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11016,790,137 - 16,801,851 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1016,741,761 - 16,801,824 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1016,767,846 - 16,779,558 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01017,516,609 - 17,528,431 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1017,515,284 - 17,528,433 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11017,240,896 - 17,252,608 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01017,563,917 - 17,575,625 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01017,696,140 - 17,707,852 (-)NCBIUU_Cfam_GSD_1.0
Ncaph2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945320,877 - 332,110 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936629321,011 - 327,607 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936629320,885 - 327,290 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NCAPH2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl5221,471 - 233,475 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.15222,784 - 233,491 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25110,546,808 - 110,557,516 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NCAPH2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11932,978,771 - 32,995,055 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1932,978,562 - 32,997,160 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604592,346,255 - 92,356,666 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ncaph2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624752258,039 - 268,737 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624752257,885 - 268,971 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ncaph2
456 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4232
Count of miRNA genes:797
Interacting mature miRNAs:1047
Transcripts:ENSMUST00000036987, ENSMUST00000074552, ENSMUST00000088717, ENSMUST00000123889, ENSMUST00000134900, ENSMUST00000136638, ENSMUST00000140665, ENSMUST00000141643, ENSMUST00000145259, ENSMUST00000145793, ENSMUST00000147207, ENSMUST00000147733, ENSMUST00000151523
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154216339695497881Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154836339698397881Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155356339689584203Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155711700591117153Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155711700591117153Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156158420095584200Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156316390397163995Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156481182698811946Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156533657899341028Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156552537699525499Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567270698101270847Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570349271104073951Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570349271104073951Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572382669104073951Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573430144104073951Mouse
1301472Pain1_mpain 1 (mouse)Not determined157532084690813185Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577527592104073951Mouse
4142060W3q6_mweight 3 weeks QTL 6 (mouse)Not determined78601103102901704Mouse
1357894Epfpq3_mepididymal fat percentage QTL 3 (mouse)Not determined1578601103102901704Mouse
14928306Manh79_mmandible shape 79 (mouse)1578847557104073951Mouse
12880411V125Dq11_mvitamin D active form serum level QTL 11 (mouse)1578897881104073951Mouse
10402490Dipa5_mdrug induced psychomotor activation 5 (mouse)Not determined1579163411104073951Mouse
4141897Imrfq2_mimmune response to Factor IX QTL 2 (mouse)Not determined79908940104073951Mouse
1301284Cosz3_mcocaine seizure 3 (mouse)Not determined1580313634104073951Mouse
4141902Cia37_mcollagen induced arthritis 37 (mouse)Not determined1580884933104073951Mouse
1300974Pgia9_mproteoglycan induced arthritis 9 (mouse)Not determined1580884933104073951Mouse
4141511Gdcr1_mglycerolphosphate dehydrogenase regulator 1 (mouse)Not determined82615474104073951Mouse
11530037Sluc34a_msusceptibility to lung cancer 34a (mouse)1585896437104073951Mouse
11530038Sluc34b_msusceptibility to lung cancer 34b (mouse)1585896437104073951Mouse
1357614Bmca_mbile mucin accumulation (mouse)Not determined1585896437104073951Mouse
1301918Skull22_mskull morphology 22 (mouse)Not determined1585901546104073951Mouse
1558845Alprf_malcohol preference (mouse)Not determined158734927190274568Mouse
12738413Lfibq10_mliver fibrosis QTL 10 (mouse)158784208589927286Mouse

Markers in Region
RH136025  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381589,372,063 - 89,372,248UniSTSGRCm38
MGSCv371589,202,494 - 89,202,679UniSTSGRCm37
Celera1591,501,204 - 91,501,389UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map15E3UniSTS
cM Map1551.6UniSTS
cM Map1549.9UniSTS
RH128722  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381589,371,377 - 89,371,578UniSTSGRCm38
MGSCv371589,201,808 - 89,202,009UniSTSGRCm37
Celera1591,500,518 - 91,500,719UniSTS
Cytogenetic Map15E3UniSTS
cM Map1549.9UniSTS
D15Ertd785e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381589,372,585 - 89,372,817UniSTSGRCm38
MGSCv371589,203,016 - 89,203,248UniSTSGRCm37
Celera1591,501,726 - 91,501,958UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map15E3UniSTS
cM Map1549.9UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001115132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_073376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_177980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_177981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_177982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001781551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC113976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB359460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE981994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY122984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY128592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000036987   ⟹   ENSMUSP00000036900
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,239,922 - 89,257,029 (+)Ensembl
GRCm38.p6 Ensembl1589,355,719 - 89,372,826 (+)Ensembl
RefSeq Acc Id: ENSMUST00000074552   ⟹   ENSMUSP00000074139
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,239,939 - 89,257,029 (+)Ensembl
GRCm38.p6 Ensembl1589,355,736 - 89,372,826 (+)Ensembl
RefSeq Acc Id: ENSMUST00000088717   ⟹   ENSMUSP00000086095
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,239,939 - 89,257,029 (+)Ensembl
GRCm38.p6 Ensembl1589,355,736 - 89,372,826 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123889
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,240,024 - 89,248,107 (+)Ensembl
GRCm38.p6 Ensembl1589,355,821 - 89,363,904 (+)Ensembl
RefSeq Acc Id: ENSMUST00000134900
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,253,895 - 89,254,878 (+)Ensembl
GRCm38.p6 Ensembl1589,369,692 - 89,370,675 (+)Ensembl
RefSeq Acc Id: ENSMUST00000136638
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,254,501 - 89,255,135 (+)Ensembl
GRCm38.p6 Ensembl1589,370,298 - 89,370,932 (+)Ensembl
RefSeq Acc Id: ENSMUST00000140665
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,254,850 - 89,255,727 (+)Ensembl
GRCm38.p6 Ensembl1589,370,647 - 89,371,524 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141643
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,240,008 - 89,248,083 (+)Ensembl
GRCm38.p6 Ensembl1589,355,805 - 89,363,880 (+)Ensembl
RefSeq Acc Id: ENSMUST00000145259   ⟹   ENSMUSP00000122118
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,239,966 - 89,257,029 (+)Ensembl
GRCm38.p6 Ensembl1589,355,763 - 89,372,826 (+)Ensembl
RefSeq Acc Id: ENSMUST00000145793
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,240,117 - 89,249,534 (+)Ensembl
GRCm38.p6 Ensembl1589,355,914 - 89,365,331 (+)Ensembl
RefSeq Acc Id: ENSMUST00000147207
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,254,081 - 89,255,443 (+)Ensembl
GRCm38.p6 Ensembl1589,369,878 - 89,371,240 (+)Ensembl
RefSeq Acc Id: ENSMUST00000147733
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,254,956 - 89,255,766 (+)Ensembl
GRCm38.p6 Ensembl1589,370,753 - 89,371,563 (+)Ensembl
RefSeq Acc Id: ENSMUST00000151523
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,254,236 - 89,255,392 (+)Ensembl
GRCm38.p6 Ensembl1589,370,033 - 89,371,189 (+)Ensembl
RefSeq Acc Id: NM_001115132   ⟹   NP_001108604
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,239,972 - 89,257,030 (+)NCBI
GRCm381589,355,719 - 89,372,850 (+)NCBI
MGSCv371589,186,153 - 89,203,259 (+)RGD
Celera1591,484,858 - 91,501,991 (+)NCBI
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001271600   ⟹   NP_001258529
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,239,972 - 89,257,030 (+)NCBI
GRCm381589,355,719 - 89,372,850 (+)NCBI
Celera1591,484,858 - 91,501,991 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001271601   ⟹   NP_001258530
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,239,972 - 89,257,030 (+)NCBI
GRCm381589,355,719 - 89,372,850 (+)NCBI
Celera1591,484,858 - 91,501,991 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001411917   ⟹   NP_001398846
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,239,972 - 89,257,030 (+)NCBI
RefSeq Acc Id: NR_073376
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,239,972 - 89,257,030 (+)NCBI
GRCm381589,355,719 - 89,372,850 (+)NCBI
Celera1591,484,858 - 91,501,991 (+)NCBI
Sequence:
RefSeq Acc Id: NR_177980
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,239,972 - 89,257,030 (+)NCBI
RefSeq Acc Id: NR_177981
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,239,972 - 89,257,030 (+)NCBI
RefSeq Acc Id: NR_177982
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,239,972 - 89,257,030 (+)NCBI
RefSeq Acc Id: XR_001781551
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,239,920 - 89,255,440 (+)NCBI
GRCm381589,355,727 - 89,371,237 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001108604   ⟸   NM_001115132
- Peptide Label: isoform a
- UniProtKB: Q99L21 (UniProtKB/Swiss-Prot),   Q8CAZ3 (UniProtKB/Swiss-Prot),   Q8C4X8 (UniProtKB/Swiss-Prot),   Q8C3K9 (UniProtKB/Swiss-Prot),   Q8C2N3 (UniProtKB/Swiss-Prot),   Q3TNI4 (UniProtKB/Swiss-Prot),   Q9CT99 (UniProtKB/Swiss-Prot),   Q8BSP2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001258530   ⟸   NM_001271601
- Peptide Label: isoform c
- UniProtKB: Q8BSP2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001258529   ⟸   NM_001271600
- Peptide Label: isoform d
- UniProtKB: E9PY48 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000122118   ⟸   ENSMUST00000145259
RefSeq Acc Id: ENSMUSP00000074139   ⟸   ENSMUST00000074552
RefSeq Acc Id: ENSMUSP00000086095   ⟸   ENSMUST00000088717
RefSeq Acc Id: ENSMUSP00000036900   ⟸   ENSMUST00000036987
RefSeq Acc Id: NP_001398846   ⟸   NM_001411917
- Peptide Label: isoform e
Protein Domains
Condensin II complex subunit H2 middle   Condensin II complex subunit H2 N-terminal   Condensin-2 complex subunit H2 C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BSP2-F1-model_v2 AlphaFold Q8BSP2 1-607 view protein structure

Promoters
RGD ID:6826599
Promoter ID:MM_KWN:19422
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000036987,   NM_001115132,   NM_025795,   NM_178919,   OTTMUST00000060166,   OTTMUST00000060169,   OTTMUST00000060170,   OTTMUST00000060171,   UC007XGE.1,   UC007XGF.1,   UC007XGJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361589,184,141 - 89,186,872 (-)MPROMDB
RGD ID:6826258
Promoter ID:MM_KWN:19423
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_0Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B6
Transcripts:OTTMUST00000060172,   OTTMUST00000060173,   OTTMUST00000060174,   OTTMUST00000060185,   OTTMUST00000060186,   OTTMUST00000060189
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361589,199,971 - 89,201,162 (+)MPROMDB
RGD ID:8684726
Promoter ID:EPDNEW_M20394
Type:initiation region
Name:Ncaph2_1
Description:Mus musculus non-SMC condensin II complex, subunit H2 , transcriptvariant 2, non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381589,355,772 - 89,355,832EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1289164 AgrOrtholog
Ensembl Genes ENSMUSG00000008690 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000036987 ENTREZGENE
  ENSMUST00000036987.12 UniProtKB/TrEMBL
  ENSMUST00000074552 ENTREZGENE
  ENSMUST00000074552.12 UniProtKB/Swiss-Prot
  ENSMUST00000088717 ENTREZGENE
  ENSMUST00000088717.7 UniProtKB/Swiss-Prot
  ENSMUST00000145259 ENTREZGENE
  ENSMUST00000145259.8 UniProtKB/TrEMBL
InterPro CNDH2_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  H2_M UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  H2_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ncaph2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:52683 UniProtKB/Swiss-Prot
MGD MGI:1289164 ENTREZGENE
NCBI Gene 52683 ENTREZGENE
PANTHER CONDENSIN-2 COMPLEX SUBUNIT H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR14324 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CNDH2_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CNDH2_M UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CNDH2_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ncaph2 PhenoGen
UniProt CNDH2_MOUSE UniProtKB/Swiss-Prot
  D6RGR7_MOUSE UniProtKB/TrEMBL
  E9PY48 ENTREZGENE, UniProtKB/TrEMBL
  Q3TNI4 ENTREZGENE
  Q3U5L1_MOUSE UniProtKB/TrEMBL
  Q8BSP2 ENTREZGENE
  Q8C2N3 ENTREZGENE
  Q8C3K9 ENTREZGENE
  Q8C4X8 ENTREZGENE
  Q8CAZ3 ENTREZGENE
  Q99L21 ENTREZGENE
  Q9CT99 ENTREZGENE
UniProt Secondary Q3TNI4 UniProtKB/Swiss-Prot
  Q8C2N3 UniProtKB/Swiss-Prot
  Q8C3K9 UniProtKB/Swiss-Prot
  Q8C4X8 UniProtKB/Swiss-Prot
  Q8CAZ3 UniProtKB/Swiss-Prot
  Q99L21 UniProtKB/Swiss-Prot
  Q9CT99 UniProtKB/Swiss-Prot