Ube2d4 (ubiquitin-conjugating enzyme E2D 4) - Rat Genome Database

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Gene: Ube2d4 (ubiquitin-conjugating enzyme E2D 4) Mus musculus
Analyze
Symbol: Ube2d4
Name: ubiquitin-conjugating enzyme E2D 4
RGD ID: 1618675
MGI Page MGI
Description: Predicted to enable ubiquitin conjugating enzyme activity. Predicted to act upstream of or within protein ubiquitination.
Type: protein-coding (Ensembl: processed_pseudogene)
Previously known as: EG546638; Gm5959; predicted gene 5959
RGD Orthologs
Human
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39 Ensembl1558,718,439 - 58,719,170 (-)EnsemblGRCm39 Ensembl
GRCm381558,823,827 - 58,847,321 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1558,846,590 - 58,847,321 (-)EnsemblGRCm38mm10GRCm38
MGSCv371558,655,382 - 58,678,876 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361558,677,078 - 58,677,404 (-)NCBIMGSCv36mm8
Celera1560,353,098 - 60,376,465 (-)NCBICelera
Cytogenetic Map15D1NCBI
cM Map1525.09NCBI


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
2. A novel rat homolog of the Saccharomyces cerevisiae ubiquitin-conjugating enzymes UBC4 and UBC5 with distinct biochemical features is induced during spermatogenesis. Wing SS, etal., Mol Cell Biol 1996 Aug;16(8):4064-72.
Additional References at PubMed
PMID:21873635  


Genomics

Comparative Map Data
Ube2d4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39 Ensembl1558,718,439 - 58,719,170 (-)EnsemblGRCm39 Ensembl
GRCm381558,823,827 - 58,847,321 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1558,846,590 - 58,847,321 (-)EnsemblGRCm38mm10GRCm38
MGSCv371558,655,382 - 58,678,876 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361558,677,078 - 58,677,404 (-)NCBIMGSCv36mm8
Celera1560,353,098 - 60,376,465 (-)NCBICelera
Cytogenetic Map15D1NCBI
cM Map1525.09NCBI
UBE2D4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38743,926,436 - 43,956,136 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl743,926,436 - 43,956,136 (+)EnsemblGRCh38hg38GRCh38
GRCh37743,966,035 - 43,995,735 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36743,932,572 - 43,959,688 (+)NCBINCBI36Build 36hg18NCBI36
Build 34743,739,286 - 43,766,403NCBI
Celera743,955,900 - 43,985,602 (+)NCBICelera
Cytogenetic Map7p13NCBI
HuRef743,850,744 - 43,880,447 (+)NCBIHuRef
CHM1_1743,969,950 - 43,999,662 (+)NCBICHM1_1
T2T-CHM13v2.0744,084,736 - 44,114,438 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2744,005,536 - 44,035,229 (+)NCBI
Ube2d4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554567,924,977 - 7,952,155 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554567,928,715 - 7,952,155 (-)NCBIChiLan1.0ChiLan1.0
UBE2D4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2644,496,560 - 44,523,657 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1792,818,701 - 92,848,433 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0740,295,047 - 40,324,705 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
Ube2d4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511899,769,696 - 99,793,110 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647818,985,711 - 19,002,056 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647818,981,457 - 19,003,924 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBE2D4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1848,733,395 - 48,756,291 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11848,735,258 - 48,756,314 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21853,448,345 - 53,469,534 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UBE2D4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12114,636,512 - 14,665,170 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2114,634,384 - 14,664,909 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660627,849,493 - 7,879,247 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ube2d4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247407,965,053 - 7,990,601 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:80
Interacting mature miRNAs:82
Transcripts:ENSMUST00000075109
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
MARC_4419-4420:966894293:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381558,847,074 - 58,847,169UniSTSGRCm38
MGSCv371558,678,629 - 58,678,724UniSTSGRCm37
Celera1560,376,218 - 60,376,313UniSTS
Cytogenetic Map15D1UniSTS
Cytogenetic Map11A1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_621400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_905852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000075109
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1558,718,439 - 58,719,170 (-)Ensembl
GRCm38.p6 Ensembl1558,846,590 - 58,847,321 (-)Ensembl
RefSeq Acc Id: XM_621400   ⟹   XP_621400
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381558,823,827 - 58,847,321 (-)ENTREZGENE
MGSCv371558,655,382 - 58,678,876 (-)RGD
cM Map15 ENTREZGENE
RefSeq Acc Id: XM_905852   ⟹   XP_910945
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera1560,353,098 - 60,376,465 (-)RGD

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000061490 Ensembl
MGD MGI:3644823 ENTREZGENE
NCBI Gene 546638 ENTREZGENE
PhenoGen Ube2d4 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-06-19 Ube2d4  ubiquitin-conjugating enzyme E2D 4  Gm5959  predicted gene 5959  Symbol and/or name change 5135510 APPROVED