1700024G13Rik (RIKEN cDNA 1700024G13 gene) - Rat Genome Database

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Gene: 1700024G13Rik (RIKEN cDNA 1700024G13 gene) Mus musculus
Analyze
Symbol: 1700024G13Rik
Name: RIKEN cDNA 1700024G13 gene
RGD ID: 1618369
MGI Page MGI
Description: Is expressed in brain; genitourinary system; node; respiratory system; and sensory organ. Orthologous to human C10orf53 (chromosome 10 open reading frame 53).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: C10orf53; hypothetical protein LOC67085; MGC130143; MGC130144; UPF0728 protein C10orf53 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391432,098,459 - 32,110,330 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1432,098,025 - 32,110,348 (-)EnsemblGRCm39 Ensembl
GRCm381432,376,502 - 32,388,373 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1432,376,068 - 32,388,391 (-)EnsemblGRCm38mm10GRCm38
MGSCv371433,189,688 - 33,201,559 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361431,205,511 - 31,217,382 (-)NCBIMGSCv36mm8
Celera1428,634,011 - 28,646,144 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1419.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:16602821   PMID:17971504   PMID:21267068   PMID:27914912  


Genomics

Comparative Map Data
1700024G13Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391432,098,459 - 32,110,330 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1432,098,025 - 32,110,348 (-)EnsemblGRCm39 Ensembl
GRCm381432,376,502 - 32,388,373 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1432,376,068 - 32,388,391 (-)EnsemblGRCm38mm10GRCm38
MGSCv371433,189,688 - 33,201,559 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361431,205,511 - 31,217,382 (-)NCBIMGSCv36mm8
Celera1428,634,011 - 28,646,144 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1419.4NCBI
C10orf53
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381049,679,651 - 49,710,261 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1049,679,651 - 49,710,261 (+)EnsemblGRCh38hg38GRCh38
GRCh371050,887,697 - 50,918,307 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361050,557,690 - 50,586,962 (+)NCBINCBI36Build 36hg18NCBI36
Build 341050,557,737 - 50,588,313NCBI
Celera1044,473,742 - 44,502,988 (+)NCBICelera
Cytogenetic Map10q11.23NCBI
HuRef1045,152,552 - 45,181,792 (+)NCBIHuRef
CHM1_11051,169,761 - 51,199,014 (+)NCBICHM1_1
T2T-CHM13v2.01050,528,463 - 50,559,046 (+)NCBIT2T-CHM13v2.0
C16h10orf53
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8167,640,521 - 7,651,190 (-)NCBIGRCr8
mRatBN7.2167,634,207 - 7,644,876 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl167,634,207 - 7,644,876 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx167,646,427 - 7,657,089 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0168,791,286 - 8,801,948 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0167,644,966 - 7,655,623 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0168,553,711 - 8,564,380 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl168,553,768 - 8,564,379 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0168,469,877 - 8,480,546 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4167,889,290 - 7,899,959 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera167,555,643 - 7,566,301 (+)NCBICelera
Cytogenetic Map16p16NCBI
CUNH10orf53
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955556623,069 - 640,552 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955556625,327 - 640,289 (-)NCBIChiLan1.0ChiLan1.0
C8H10orf53
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2861,947,704 - 61,979,508 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11061,953,024 - 61,984,828 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01044,544,269 - 44,563,335 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
C28H10orf53
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1281,538,780 - 1,551,637 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl281,538,818 - 1,551,609 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha281,773,970 - 1,786,827 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0281,716,210 - 1,729,067 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl281,716,248 - 1,729,039 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1281,513,427 - 1,526,284 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0281,550,570 - 1,563,431 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0281,682,425 - 1,695,282 (+)NCBIUU_Cfam_GSD_1.0
CUNH10orf53
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721379,425,586 - 79,429,710 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936728628,600 - 632,261 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C14H10orf53
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1490,177,416 - 90,186,925 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11490,177,441 - 90,186,676 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21498,085,591 - 98,095,175 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH10orf53
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1942,131,440 - 42,146,660 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660481,877,364 - 1,890,986 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH10orf53
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624928309,959 - 350,471 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624928285,288 - 350,511 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in 1700024G13Rik
477 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:200
Count of miRNA genes:190
Interacting mature miRNAs:199
Transcripts:ENSMUST00000100723
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226748Femd8_mfemur midshaft diameter 8, 10 week (mouse)141376927346737457Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
1301372Sluc13_msusceptibility to lung cancer 13 (mouse)Not determined141882760452827726Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
1301991Wta3_mweight adult 3 (mouse)Not determined14388747337887650Mouse
4141864Mrdq4_mmodifier of retinal degeneration QTL 4 (mouse)Not determined992324548765082Mouse
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
27226752Femd4_mfemur midshaft diameter 4, 5 week (mouse)141376927347237457Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300544Hypn_mhyperinsulinemia (mouse)Not determined141516061649160765Mouse
27226744Metcl6_mmetatarsal-calcaneal length 6, 5 week (mouse)143032195752937457Mouse
4141550Dbm3_mdiabetes modifier 3 (mouse)Not determined514347339143596Mouse
27226775Tibl7_mtibia length 7, 5 week (mouse)143032195748837457Mouse
1300779Dyscalc4_mdystrophic cardiac calcinosis 4 (mouse)Not determined141221287146213007Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000100723   ⟹   ENSMUSP00000098289
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1432,098,025 - 32,110,348 (-)Ensembl
GRCm38.p6 Ensembl1432,376,068 - 32,388,391 (-)Ensembl
RefSeq Acc Id: NM_001034037   ⟹   NP_001029209
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391432,098,459 - 32,110,330 (-)NCBI
GRCm381432,376,502 - 32,388,373 (-)ENTREZGENE
MGSCv371433,189,688 - 33,201,559 (-)RGD
Celera1428,634,011 - 28,646,144 (-)RGD
cM Map14 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001029209 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI07223 (Get FASTA)   NCBI Sequence Viewer  
  AAI07224 (Get FASTA)   NCBI Sequence Viewer  
  EDL24837 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000098289
  ENSMUSP00000098289.3
GenBank Protein Q3KNL4 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001029209   ⟸   NM_001034037
- UniProtKB: Q3KNL4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000098289   ⟸   ENSMUST00000100723

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3KNL4-F1-model_v2 AlphaFold Q3KNL4 1-93 view protein structure

Promoters
RGD ID:8681866
Promoter ID:EPDNEW_M18964
Type:initiation region
Name:1700024G13Rik_1
Description:Mus musculus RIKEN cDNA 1700024G13 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381432,388,382 - 32,388,442EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914335 AgrOrtholog
Ensembl Genes ENSMUSG00000072473 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000100723 ENTREZGENE
  ENSMUST00000100723.4 UniProtKB/Swiss-Prot
InterPro UPF0728 UniProtKB/Swiss-Prot
KEGG Report mmu:67085 UniProtKB/Swiss-Prot
MGD MGI:1914335 ENTREZGENE
NCBI Gene 67085 ENTREZGENE
PANTHER PTHR28448 UniProtKB/Swiss-Prot
  UPF0728 PROTEIN C10ORF53 UniProtKB/Swiss-Prot
Pfam UPF0728 UniProtKB/Swiss-Prot
PhenoGen 1700024G13Rik PhenoGen
UniProt CJ053_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE