Pacs2 (phosphofurin acidic cluster sorting protein 2) - Rat Genome Database

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Gene: Pacs2 (phosphofurin acidic cluster sorting protein 2) Mus musculus
Analyze
Symbol: Pacs2
Name: phosphofurin acidic cluster sorting protein 2
RGD ID: 1618175
MGI Page MGI
Description: Predicted to enable transmembrane transporter binding activity. Predicted to be involved in endoplasmic reticulum calcium ion homeostasis; mitochondrion-endoplasmic reticulum membrane tethering; and protein localization to plasma membrane. Predicted to act upstream of or within protein localization to phagophore assembly site. Predicted to be located in endoplasmic reticulum and mitochondrion. Is expressed in several structures, including diaphragm; limb segment; nervous system; sensory organ; and skeletal musculature. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 66. Orthologous to human PACS2 (phosphofurin acidic cluster sorting protein 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 6720425G15Rik; AW208651; AW489976; E230011J22; mKIAA0602; Pa; PACS-2; PACS1-like protein; Pacs1l; phosphofurin acidic cluster sorting protein 1-like
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912112,977,998 - 113,038,021 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12112,978,128 - 113,038,021 (+)EnsemblGRCm39 Ensembl
GRCm3812113,014,454 - 113,074,401 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12113,014,508 - 113,074,401 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712114,252,719 - 114,312,612 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612113,462,316 - 113,522,209 (+)NCBIMGSCv36mm8
Celera12114,258,367 - 114,288,553 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1261.57NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12693553   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:16944949   PMID:18296443   PMID:19481529   PMID:21267068   PMID:21873635   PMID:25159152   PMID:26108729   PMID:26943323   PMID:29312533   PMID:30415949   PMID:31138677  
PMID:32325033   PMID:35133431   PMID:36747781   PMID:36968068   PMID:37794057   PMID:38169625   PMID:38355793  


Genomics

Comparative Map Data
Pacs2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912112,977,998 - 113,038,021 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12112,978,128 - 113,038,021 (+)EnsemblGRCm39 Ensembl
GRCm3812113,014,454 - 113,074,401 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12113,014,508 - 113,074,401 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712114,252,719 - 114,312,612 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612113,462,316 - 113,522,209 (+)NCBIMGSCv36mm8
Celera12114,258,367 - 114,288,553 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1261.57NCBI
PACS2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814105,300,774 - 105,398,147 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14105,300,563 - 105,398,147 (+)EnsemblGRCh38hg38GRCh38
GRCh3714105,767,111 - 105,864,484 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3614104,852,126 - 104,935,529 (+)NCBINCBI36Build 36hg18NCBI36
Celera1485,829,098 - 85,913,416 (+)NCBICelera
Cytogenetic Map14q32.33NCBI
HuRef1485,963,394 - 86,060,744 (+)NCBIHuRef
CHM1_114105,697,040 - 105,802,244 (+)NCBICHM1_1
T2T-CHM13v2.01499,548,161 - 99,645,650 (+)NCBIT2T-CHM13v2.0
Pacs2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86137,918,040 - 137,977,767 (+)NCBIGRCr8
mRatBN7.26132,096,992 - 132,156,702 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6132,096,901 - 132,154,583 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.06137,824,136 - 137,889,144 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6137,824,213 - 137,887,418 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06146,820,318 - 146,884,454 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46138,023,917 - 138,080,745 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera6129,635,451 - 129,694,749 (+)NCBICelera
Cytogenetic Map6q32NCBI
Pacs2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555383,559,724 - 3,619,649 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555383,559,738 - 3,616,862 (+)NCBIChiLan1.0ChiLan1.0
PACS2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215106,472,988 - 106,573,262 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan114105,689,373 - 105,789,763 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01485,935,807 - 86,035,935 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.114105,749,588 - 105,810,253 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl14105,737,878 - 105,810,349 (+)Ensemblpanpan1.1panPan2
PACS2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1872,672,861 - 72,721,655 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl872,673,472 - 72,721,215 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha872,174,559 - 72,232,011 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0872,951,315 - 73,009,738 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl872,951,294 - 73,009,742 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1872,631,522 - 72,688,898 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0872,682,224 - 72,738,406 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0873,072,339 - 73,129,777 (+)NCBIUU_Cfam_GSD_1.0
Pacs2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086401,343,769 - 1,377,706 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936621175,387 - 206,662 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936621172,727 - 206,803 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PACS2
(Sus scrofa - pig)		 No map positions available.
PACS2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12483,211,766 - 83,292,231 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2483,212,300 - 83,295,233 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605370,661,836 - 70,742,767 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pacs2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624734125,190 - 184,756 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624734125,190 - 184,690 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pacs2
1806 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1217
Count of miRNA genes:621
Interacting mature miRNAs:758
Transcripts:ENSMUST00000084891
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226793Feml10_mfemur length 10, 5 week (mouse)1268346774113363620Mouse
4141610Tailaq1_mtail length adjusted QTL 1 (mouse)Not determined80956708113383533Mouse
4142401Egq10_mearly growth QTL 10 (mouse)Not determined80956708113383533Mouse
4141335W6q10_mweight 6 weeks QTL 10 (mouse)Not determined80956708113383533Mouse
39128213Lwq23_mliver weight QTL 10 (mouse)1280956708113383533Mouse
13524849Ppiq11a_mprepulse inhibition QTL 11a (mouse)1280989143114989143Mouse
13524846Ppiq11_mprepulse inhibition QTL 11 (mouse)1282666396116666396Mouse
1301492Dbsty3_mdiabesity 3 (mouse)Not determined1283532075117532224Mouse
1301879Insq10_minsulin QTL 10 (mouse)Not determined1283532075117532224Mouse
1300883Ath21_matherosclerosis 21 (mouse)Not determined1285961579119961683Mouse
10412156Nociq3_mnociceptive sensitivity inflammatory QTL 3 (mouse)Not determined1286396075114831653Mouse
4142007Chlq17_mcirculating hormone level QTL 17 (mouse)Not determined1288052874120092757Mouse
1300545Lifespan3_mlife span 3 (mouse)Not determined1288052874120092757Mouse
1301308Prdt4_mprion disease incubation time 4 (mouse)Not determined1288308354120092757Mouse
5491194Mobq3_mmultigenic obesity QTL 3 (mouse)Not determined1289664071120092757Mouse
1301836Heal5_mwound healing/regeneration 5 (mouse)Not determined1289939031120092757Mouse
1301922Bbaa6_mB.burgdorferi-associated arthritis 6 (mouse)Not determined1290308268120092757Mouse
10402491Dipa4_mdrug induced psychomotor activation 4 (mouse)Not determined1291222515120092757Mouse
12910532Nrq10a_mnoise-induced hearing loss resistant QTL 10a (mouse)1292750025120092757Mouse
12910533Nrq10_mnoise-induced hearing loss resistant QTL 10 (mouse)1292750025120092757Mouse
1357463Vtbt14_mvertebral trabecular bone trait 14 (mouse)Not determined1292936097120092757Mouse
1300973Abmm_mantibody mediated myocarditis (mouse)Not determined1293264461120092757Mouse
1302177Dps2_mdelta power in slow-wave sleep 2 (mouse)Not determined1294146064120092757Mouse
1302138Im6_mimmunoregulatory 6 (mouse)Not determined1296860337120092757Mouse
1301269Sluc12_msusceptibility to lung cancer 12 (mouse)Not determined1296860337120092757Mouse
10412075Nils1_mneointima lesion size 1 (mouse)Not determined12102024665120092757Mouse
4141297Plyid_mPolymeric IgA dominance (mouse)Not determined109183385115885122Mouse
1558957Igan4_mIgA nephropathy 4 (mouse)Not determined12109750025119024949Mouse
15092085Igly2_mIgG glycosylation 2, GP14 (mouse)12111737297119992757Mouse

Markers in Region
RH130161  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3812113,074,055 - 113,074,225UniSTSGRCm38
MGSCv3712114,312,266 - 114,312,436UniSTSGRCm37
Celera12114,288,207 - 114,288,377UniSTS
Cytogenetic Map12F1UniSTS
AW208651  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3812113,073,986 - 113,074,072UniSTSGRCm38
MGSCv3712114,312,197 - 114,312,283UniSTSGRCm37
Celera12114,288,138 - 114,288,224UniSTS
Cytogenetic Map12F1UniSTS
Whitehead/MRC_RH121047.78UniSTS
Whitehead/MRC_RH121055.08UniSTS
C80068  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3812113,054,036 - 113,054,167UniSTSGRCm38
MGSCv3712114,292,247 - 114,292,378UniSTSGRCm37
Celera12114,268,178 - 114,268,309UniSTS
Cytogenetic Map12F1UniSTS
Whitehead/MRC_RH121055.08UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001081170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001291445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006515779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003950043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004937491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_381518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_381519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC073562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC043302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC051499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC059076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU019611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000084891   ⟹   ENSMUSP00000081953
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12112,978,128 - 113,038,021 (+)Ensembl
GRCm38.p6 Ensembl12113,014,508 - 113,074,401 (+)Ensembl
RefSeq Acc Id: ENSMUST00000220541   ⟹   ENSMUSP00000152145
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12112,978,153 - 113,035,757 (+)Ensembl
GRCm38.p6 Ensembl12113,014,533 - 113,072,137 (+)Ensembl
RefSeq Acc Id: ENSMUST00000220715
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12113,025,825 - 113,038,006 (+)Ensembl
GRCm38.p6 Ensembl12113,062,205 - 113,074,386 (+)Ensembl
RefSeq Acc Id: ENSMUST00000221382
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12113,034,292 - 113,035,017 (+)Ensembl
GRCm38.p6 Ensembl12113,070,672 - 113,071,397 (+)Ensembl
RefSeq Acc Id: ENSMUST00000221475
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12113,031,422 - 113,032,917 (+)Ensembl
GRCm38.p6 Ensembl12113,067,802 - 113,069,297 (+)Ensembl
RefSeq Acc Id: ENSMUST00000222406   ⟹   ENSMUSP00000152250
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12112,978,154 - 113,013,475 (+)Ensembl
GRCm38.p6 Ensembl12113,014,534 - 113,049,855 (+)Ensembl
RefSeq Acc Id: ENSMUST00000223502   ⟹   ENSMUSP00000152439
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12112,978,128 - 113,035,758 (+)Ensembl
GRCm38.p6 Ensembl12113,014,508 - 113,072,138 (+)Ensembl
RefSeq Acc Id: NM_001081170   ⟹   NP_001074639
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912112,978,128 - 113,038,021 (+)NCBI
GRCm3812113,014,508 - 113,074,401 (+)NCBI
MGSCv3712114,252,719 - 114,312,612 (+)RGD
Celera12114,258,367 - 114,288,553 (+)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001291444   ⟹   NP_001278373
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912112,978,128 - 113,038,021 (+)NCBI
GRCm3812113,014,508 - 113,074,401 (+)NCBI
Celera12114,258,367 - 114,288,553 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001291445   ⟹   NP_001278374
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912112,978,128 - 113,038,021 (+)NCBI
GRCm3812113,014,508 - 113,074,401 (+)NCBI
Celera12114,258,367 - 114,288,553 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006515769   ⟹   XP_006515832
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912112,977,998 - 113,038,013 (+)NCBI
GRCm3812113,014,454 - 113,074,393 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006515770   ⟹   XP_006515833
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912112,977,998 - 113,038,013 (+)NCBI
GRCm3812113,014,505 - 113,074,393 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006515771   ⟹   XP_006515834
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912112,977,998 - 113,038,013 (+)NCBI
GRCm3812113,014,507 - 113,074,393 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006515772   ⟹   XP_006515835
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912112,977,998 - 113,038,013 (+)NCBI
GRCm3812113,014,454 - 113,074,393 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006515773   ⟹   XP_006515836
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912112,977,998 - 113,038,013 (+)NCBI
GRCm3812113,014,454 - 113,074,393 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006515774   ⟹   XP_006515837
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912112,977,998 - 113,038,013 (+)NCBI
GRCm3812113,014,505 - 113,074,393 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006515777   ⟹   XP_006515840
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912112,977,998 - 113,038,013 (+)NCBI
GRCm3812113,014,507 - 113,074,393 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006515778   ⟹   XP_006515841
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912112,978,143 - 113,038,013 (+)NCBI
GRCm3812113,014,534 - 113,074,393 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006515779   ⟹   XP_006515842
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912112,977,998 - 113,025,528 (+)NCBI
GRCm3812113,014,505 - 113,061,925 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246677   ⟹   XP_030102537
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912112,977,998 - 113,038,013 (+)NCBI
GRCm3812113,014,507 - 113,074,393 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246678   ⟹   XP_030102538
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912112,977,998 - 113,038,013 (+)NCBI
GRCm3812113,014,505 - 113,074,393 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246679   ⟹   XP_030102539
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912112,977,998 - 113,038,013 (+)NCBI
GRCm3812113,014,507 - 113,074,393 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246680   ⟹   XP_030102540
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912112,978,352 - 113,038,013 (+)NCBI
GRCm3812113,014,721 - 113,074,393 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246681   ⟹   XP_030102541
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912112,978,351 - 113,038,013 (+)NCBI
GRCm3812113,015,045 - 113,074,393 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157368   ⟹   XP_036013261
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912112,977,998 - 113,038,013 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157370   ⟹   XP_036013263
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912112,978,143 - 113,038,013 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003950043
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912112,977,998 - 113,026,997 (+)NCBI
GRCm3812113,014,505 - 113,062,499 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004937491
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912112,977,998 - 113,038,013 (+)NCBI
Sequence:
RefSeq Acc Id: XR_381518
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912112,977,998 - 113,038,013 (+)NCBI
GRCm3812113,014,454 - 113,074,393 (+)NCBI
Sequence:
RefSeq Acc Id: XR_381519
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912112,977,998 - 113,038,013 (+)NCBI
GRCm3812113,014,454 - 113,074,393 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001074639 (Get FASTA)   NCBI Sequence Viewer  
  NP_001278373 (Get FASTA)   NCBI Sequence Viewer  
  NP_001278374 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515832 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515833 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515834 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515835 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515836 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515837 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515840 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515841 (Get FASTA)   NCBI Sequence Viewer  
  XP_006515842 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102537 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102538 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102539 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102540 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102541 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013261 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013263 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH43302 (Get FASTA)   NCBI Sequence Viewer  
  AAH59076 (Get FASTA)   NCBI Sequence Viewer  
  BAC65608 (Get FASTA)   NCBI Sequence Viewer  
  BAE20449 (Get FASTA)   NCBI Sequence Viewer  
  BAE20504 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000081953
  ENSMUSP00000081953.5
  ENSMUSP00000152145
  ENSMUSP00000152145.2
  ENSMUSP00000152250.2
  ENSMUSP00000152439
  ENSMUSP00000152439.2
GenBank Protein Q3V3Q7 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001074639   ⟸   NM_001081170
- Peptide Label: isoform 2
- UniProtKB: E9Q7E9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006515832   ⟸   XM_006515769
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006515836   ⟸   XM_006515773
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006515835   ⟸   XM_006515772
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006515833   ⟸   XM_006515770
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006515837   ⟸   XM_006515774
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006515834   ⟸   XM_006515771
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006515840   ⟸   XM_006515777
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_006515842   ⟸   XM_006515779
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_006515841   ⟸   XM_006515778
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: NP_001278373   ⟸   NM_001291444
- Peptide Label: isoform 1
- UniProtKB: A0A1Y7VLZ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001278374   ⟸   NM_001291445
- Peptide Label: isoform 3
- UniProtKB: Q80TW2 (UniProtKB/Swiss-Prot),   E9QKL3 (UniProtKB/Swiss-Prot),   Q80VG3 (UniProtKB/Swiss-Prot),   Q3V3Q7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030102538   ⟸   XM_030246678
- Peptide Label: isoform X9
RefSeq Acc Id: XP_030102537   ⟸   XM_030246677
- Peptide Label: isoform X5
RefSeq Acc Id: XP_030102539   ⟸   XM_030246679
- Peptide Label: isoform X10
RefSeq Acc Id: XP_030102540   ⟸   XM_030246680
- Peptide Label: isoform X13
RefSeq Acc Id: XP_030102541   ⟸   XM_030246681
- Peptide Label: isoform X12
RefSeq Acc Id: ENSMUSP00000152439   ⟸   ENSMUST00000223502
RefSeq Acc Id: ENSMUSP00000152250   ⟸   ENSMUST00000222406
RefSeq Acc Id: ENSMUSP00000081953   ⟸   ENSMUST00000084891
RefSeq Acc Id: ENSMUSP00000152145   ⟸   ENSMUST00000220541
RefSeq Acc Id: XP_036013261   ⟸   XM_036157368
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036013263   ⟸   XM_036157370
- Peptide Label: isoform X14

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3V3Q7-F1-model_v2 AlphaFold Q3V3Q7 1-862 view protein structure

Promoters
RGD ID:8679416
Promoter ID:EPDNEW_M17739
Type:initiation region
Name:Pacs2_1
Description:Mus musculus phosphofurin acidic cluster sorting protein 2 ,transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3812113,014,534 - 113,014,594EPDNEW
RGD ID:6823244
Promoter ID:MM_KWN:12896
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000019147,   NM_001081170,   UC007PFP.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3612114,252,286 - 114,253,217 (+)MPROMDB
RGD ID:6823248
Promoter ID:MM_KWN:12897
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung,   Spleen
Transcripts:UC007PFS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3612114,287,781 - 114,288,597 (+)MPROMDB
RGD ID:6846989
Promoter ID:MM_ACW:12201
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain
Transcripts:PACS2.FSEP07,   PACS2.HSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3612114,298,914 - 114,299,414 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1924399 AgrOrtholog
Ensembl Genes ENSMUSG00000021143 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000084891 ENTREZGENE
  ENSMUST00000084891.5 UniProtKB/TrEMBL
  ENSMUST00000220541 ENTREZGENE
  ENSMUST00000220541.2 UniProtKB/Swiss-Prot
  ENSMUST00000222406.2 UniProtKB/TrEMBL
  ENSMUST00000223502 ENTREZGENE
  ENSMUST00000223502.2 UniProtKB/TrEMBL
InterPro Phosphofurin_acidic_CS-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:217893 UniProtKB/Swiss-Prot
MGD MGI:1924399 ENTREZGENE
NCBI Gene 217893 ENTREZGENE
PANTHER PHOSPHOFURIN ACIDIC CLUSTER SORTING PROTEIN 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13280 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Pacs-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pacs2 PhenoGen
UniProt A0A1Y7VLZ7 ENTREZGENE, UniProtKB/TrEMBL
  A0A1Y7VN58_MOUSE UniProtKB/TrEMBL
  E9Q7E9 ENTREZGENE, UniProtKB/TrEMBL
  E9QKL3 ENTREZGENE
  PACS2_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3V3Y3_MOUSE UniProtKB/TrEMBL
  Q6PCX4_MOUSE UniProtKB/TrEMBL
  Q80TW2 ENTREZGENE
  Q80VG3 ENTREZGENE
UniProt Secondary E9QKL3 UniProtKB/Swiss-Prot
  Q80TW2 UniProtKB/Swiss-Prot
  Q80VG3 UniProtKB/Swiss-Prot