Or6c7 (olfactory receptor family 6 subfamily C member 7) - Rat Genome Database

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Gene: Or6c7 (olfactory receptor family 6 subfamily C member 7) Mus musculus
Analyze
No known orthologs.
Symbol: Or6c7
Name: olfactory receptor family 6 subfamily C member 7
RGD ID: 1618057
MGI Page MGI
Description: Predicted to enable olfactory receptor activity.
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: GA_x6K02T2PULF-11165842-11166815; MOR111; MOR111-; MOR111-13; MOR111-9P; olfactory receptor 789; olfactory receptor MOR111-9P; Olfr78; Olfr789; Olfr789-ps1
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
NCBI Annotation Information: Note: This locus was previously defined as a pseudogene but is now represented as protein coding. Even though there is no evidence of transcription, this locus does have the potential to encode a well-conserved protein. [11 Mar 2015]
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910129,322,881 - 129,323,819 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10129,320,621 - 129,326,411 (+)EnsemblGRCm39 Ensembl
GRCm3810129,487,012 - 129,487,950 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10129,484,752 - 129,490,542 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710128,924,068 - 128,925,006 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610128,889,877 - 128,891,274 (+)NCBIMGSCv36mm8
Celera10131,872,933 - 131,873,906 (+)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1077.35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:11802173   PMID:11875048   PMID:14611657   PMID:15081110   PMID:21873635   PMID:32295537  


Genomics

Variants

.
Variants in Or6c7
25 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
1357544Vtbt10_mvertebral trabecular bone trait 10 (mouse)Not determined1097217101130530862Mouse
4142461Bmd25_mbone mineral density 25 (mouse)Not determined1097217101130530862Mouse
11533919Mvb4_mmodifier of vibrator 4 (mouse)397217101130530862Mouse
11533921Mvb2_mmodifier of vibrator 2 (mouse)1097217101130530862Mouse
12880413V125Dq9_mvitamin D active form serum level QTL 9 (mouse)1097535905130530862Mouse
4141402T2dm1sa_mtype 2 diabetes mellitus 1 in SMXA RI mice (mouse)Not determined97758644130530862Mouse
11040593Lmr5e_mleishmaniasis resistance 5e (mouse)1099220635130530862Mouse
11040595Lmr5c_mleishmaniasis resistance 5c (mouse)1099220635130530862Mouse
11040597Lmr5a_mleishmaniasis resistance 5a (mouse)1099220635130530862Mouse
1357744Cfbw4_mcystic fibrosis body weight 4 (mouse)Not determined10100986516130530862Mouse
1301968Estq4_mestradiol regulated response QTL 4 (mouse)Not determined10100986516130530862Mouse
1301901Im5_mimmunoregulatory 5 (mouse)Not determined10101497164130530862Mouse
4141361Cfmq3_mcystic fibrosis modifier QTL 3 (mouse)Not determined10101497164130530862Mouse
1300678Leg2_mlongevity extending gene 2 (mouse)Not determined10102506908130530862Mouse
1301895Exq1_mexploratory and excitability QTL 1 (mouse)Not determined10102847852130530862Mouse
14696727Kidrq2_mkidney weight, right QTL 2 (mouse)10102902508130530862Mouse
4141007Obrq10_mobesity resistance QTL 10 (mouse)Not determined103243727130530862Mouse
4141487Tgq21_mtriglyceride QTL 21 (mouse)Not determined104110021130530862Mouse
14746996Manh69_mmandible shape 69 (mouse)10104763638130530862Mouse
1302200Sle12_msystematic lupus erythematosus susceptibility 12 (mouse)Not determined10105041304130530862Mouse
1357482Nhdlq4_mnon-HDL QTL 4 (mouse)Not determined10105041304130530862Mouse
1300679Nociq2_mnociceptive sensitivity inflammatory QTL 2 (mouse)Not determined10105041304130530862Mouse
11040594Lmr5f_mleishmaniasis resistance 5f (mouse)10105179713130530862Mouse
11040596Lmr5d_mleishmaniasis resistance 5d (mouse)10105179713130530862Mouse
11040598Lmr5b_mleishmaniasis resistance 5b (mouse)10105179713130530862Mouse
4142089Obrq9_mobesity resistance QTL 9 (mouse)Not determined108515907130530862Mouse
4141153Ltgq2_mliver triglyceride QTL 2 (mouse)Not determined108515907130530862Mouse
11041664Lmr25_mleishmaniasis resistance 25 (mouse)10108575094130530862Mouse
11039496Ltpr5b_mLeishmania tropica response 5b (mouse)10108575094130530862Mouse
11049570Lmr25b_mleishmaniasis resistance 25b (mouse)10108575094130530862Mouse
11049563Lmr25a_mleishmaniasis resistance 25a (mouse)10108575094130530862Mouse
12911218Frct3a_mfear conditioning traits 3a (mouse)10122785970129466996Mouse
12911220Frct3c_mfear conditioning traits 3c (mouse)10122785970129466996Mouse
12879490Frct3_mfear conditioning traits 3 (mouse)10122785970129466996Mouse
12904001Opfaq10_mopen field activity QTL 10 (mouse)10125633671129466375Mouse
12911219Frct3b_mfear conditioning traits 3b (mouse)10127675574129466996Mouse
12911221Frct3d_mfear conditioning traits 3d (mouse)10127675574129466996Mouse
12904000Opfaq7_mopen field activity QTL 7 (mouse)10127746318129466375Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000213236   ⟹   ENSMUSP00000150482
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10129,320,621 - 129,326,411 (+)Ensembl
GRCm38.p6 Ensembl10129,484,752 - 129,490,542 (+)Ensembl
RefSeq Acc Id: ENSMUST00000213992   ⟹   ENSMUSP00000151052
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10129,320,629 - 129,326,411 (+)Ensembl
GRCm38.p6 Ensembl10129,484,760 - 129,490,542 (+)Ensembl
RefSeq Acc Id: NM_001305433   ⟹   NP_001292362
RefSeq Status: INFERRED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910129,322,881 - 129,323,819 (+)NCBI
GRCm3810129,487,012 - 129,487,950 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001292362 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000150482
  ENSMUSP00000150482.2
  ENSMUSP00000151052.2
Reference Protein Sequences
RefSeq Acc Id: NP_001292362   ⟸   NM_001305433
- UniProtKB: A0A1L1SV77 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000150482   ⟸   ENSMUST00000213236
RefSeq Acc Id: ENSMUSP00000151052   ⟸   ENSMUST00000213992
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A1L1SV77-F1-model_v2 AlphaFold A0A1L1SV77 1-312 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3030623 AgrOrtholog
Ensembl Genes ENSMUSG00000111273 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000213236 ENTREZGENE
  ENSMUST00000213236.2 UniProtKB/TrEMBL
  ENSMUST00000213992.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
  Olfact_rcpt_6C-like UniProtKB/TrEMBL
KEGG Report mmu:258148 UniProtKB/TrEMBL
MGD MGI:3030623 ENTREZGENE
NCBI Gene 258148 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or6c7 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A1L1SV77 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-24 Or6c7  olfactory receptor family 6 subfamily C member 7  Olfr789  olfactory receptor 789  Symbol and/or name change 5135510 APPROVED
2015-03-31 Olfr789  olfactory receptor 789  Olfr789-ps1  olfactory receptor 789, pseudogene 1  Symbol and/or name change 5135510 APPROVED