Mir670hg (MIR670 host gene (non-protein coding)) - Rat Genome Database

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Gene: Mir670hg (MIR670 host gene (non-protein coding)) Mus musculus
Analyze
Symbol: Mir670hg
Name: MIR670 host gene (non-protein coding)
RGD ID: 1617928
MGI Page MGI
Description: Orthologous to human MIR670HG (MIR670 host gene).
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: E530001K10Rik; RIKEN cDNA E530001K10 gene
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39293,990,981 - 94,095,446 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl293,990,980 - 94,095,374 (-)EnsemblGRCm39 Ensembl
GRCm38294,160,636 - 94,265,103 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl294,160,636 - 94,264,918 (-)EnsemblGRCm38mm10GRCm38
MGSCv37294,092,035 - 94,104,896 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36294,092,031 - 94,112,239 (-)NCBIMGSCv36mm8
Celera295,648,696 - 95,661,452 (-)NCBICelera
Cytogenetic Map2E1NCBI
cM Map251.63NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18799693   PMID:24316575  


Genomics

Comparative Map Data
Mir670hg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39293,990,981 - 94,095,446 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl293,990,980 - 94,095,374 (-)EnsemblGRCm39 Ensembl
GRCm38294,160,636 - 94,265,103 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl294,160,636 - 94,264,918 (-)EnsemblGRCm38mm10GRCm38
MGSCv37294,092,035 - 94,104,896 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36294,092,031 - 94,112,239 (-)NCBIMGSCv36mm8
Celera295,648,696 - 95,661,452 (-)NCBICelera
Cytogenetic Map2E1NCBI
cM Map251.63NCBI
MIR670HG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381143,569,306 - 43,570,400 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1143,569,306 - 43,570,395 (+)EnsemblGRCh38hg38GRCh38
GRCh371143,590,856 - 43,591,950 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera1143,737,803 - 43,738,892 (+)NCBICelera
Cytogenetic Map11p11.2NCBI
HuRef1143,288,586 - 43,302,060 (+)NCBIHuRef
CHM1_11143,578,147 - 43,591,621 (+)NCBICHM1_1
T2T-CHM13v2.01143,724,672 - 43,725,766 (+)NCBIT2T-CHM13v2.0

Variants

.
Variants in Mir670hg
3191 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:130
Count of miRNA genes:127
Interacting mature miRNAs:129
Transcripts:ENSMUST00000129661, ENSMUST00000134563
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240885493114910165Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
1357577Trmq3_mT cell ratio modifier QTL 3 (mouse)Not determined260520612119355518Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
10044002Hdl7_mHDL level 7 (mouse)Not determined26300595497006113Mouse
10053681Lith24_mlithogenic gene 24 (mouse)Not determined26300595497006113Mouse
1301405Etohr_methanol response acute (mouse)Not determined26300595497006113Mouse
1301703Bomd3_mbone mineral density 3 (mouse)Not determined26300595497006113Mouse
1300662Etohila_methanol induced locomotor activity (mouse)Not determined26300595497006113Mouse
1301048Actre2_mactivity response to ethanol 2 (mouse)Not determined26300595497006113Mouse
1301873Hsl1_mhyperoxia susceptibility locus 1 (mouse)Not determined26357015497570301Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
1301660Iba1_minduction of brown adipocytes 1 (mouse)Not determined267647887101648142Mouse
13463482Mchq17_mmean corpuscular hemoglobin QTL 17 (mouse)267647887101648142Mouse
1301882Etohc2_methanol consumption 2 (mouse)Not determined268724269102724407Mouse
1301948Elsgp3_melevated serum gp70 3 (mouse)Not determined268724269102724407Mouse
4142088Parms1_mpatched associated RMS 1 (mouse)Not determined74524117114123532Mouse
11528549Sluc31_msusceptibility to lung cancer 31 (mouse)274524117129213005Mouse
1301374Cplaq7_mcircadian period of locomotor activity 7 (mouse)Not determined276421483110421651Mouse
4141657Mohg1_mmodifier of hg 1 (mouse)Not determined276678758103095823Mouse
10043894Bw22_mbody weight QTL 22 (mouse)Not determined280895334114895334Mouse
15092054Egrme5_mearly growth rate, maternal effect 5 (mouse)282190187118004745Mouse
1558901Skmw8_mskeletal muscle weight 8 (mouse)Not determined284008488118008593Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284013198148522175Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284013198148667470Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
11049565Lmr28g_mleishmaniasis resistance 28g (mouse)286095716120095823Mouse
11038697Ltpr2d_mLeishmania tropica response 2d (mouse)286095716120095823Mouse
11038698Ltpr2c_mLeishmania tropica response 2c (mouse)286095716120095823Mouse
1300852Lmr14_mleishmaniasis resistance 14 (mouse)Not determined286095716120095823Mouse
1301834Bits1_mbitterness sensitivity 1 (mouse)Not determined287440643121440778Mouse
11532731Sluc31a_msusceptibility to lung cancer 31a (mouse)288015003122015170Mouse
4142223Femwf4_mfemur work to failure 4 (mouse)Not determined88143423122143570Mouse
1301098Cd8mts3_mCD8 memory T cell subset 3 (mouse)Not determined291089974125090104Mouse
1301909Smdq2_msegregation of mitochondrial DNA QTL 2 (mouse)Not determined292778465126778607Mouse

Markers in Region
19.MMHAP94FLG1.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38294,254,323 - 94,254,478UniSTSGRCm38
MGSCv37294,094,480 - 94,094,635UniSTSGRCm37
Celera295,651,145 - 95,651,300UniSTS
Cytogenetic Map2E1UniSTS
Whitehead_YAC2 UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000129661
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl294,079,154 - 94,095,374 (-)Ensembl
GRCm38.p6 Ensembl294,251,879 - 94,264,739 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134563
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl294,091,309 - 94,095,265 (-)Ensembl
GRCm38.p6 Ensembl294,260,966 - 94,264,758 (-)Ensembl
RefSeq Acc Id: ENSMUST00000209947
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl293,990,981 - 94,009,271 (-)Ensembl
GRCm38.p6 Ensembl294,160,637 - 94,178,915 (-)Ensembl
RefSeq Acc Id: ENSMUST00000210721
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl294,068,637 - 94,073,683 (-)Ensembl
GRCm38.p6 Ensembl294,238,292 - 94,243,338 (-)Ensembl
RefSeq Acc Id: ENSMUST00000210851
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl293,990,981 - 94,095,070 (-)Ensembl
GRCm38.p6 Ensembl294,160,636 - 94,264,725 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211430
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl293,990,980 - 94,095,263 (-)Ensembl
GRCm38.p6 Ensembl294,160,637 - 94,264,918 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211619
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl294,082,218 - 94,095,073 (-)Ensembl
GRCm38.p6 Ensembl294,251,878 - 94,264,608 (-)Ensembl
RefSeq Acc Id: ENSMUST00000240902
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl294,007,280 - 94,009,315 (-)Ensembl
RefSeq Acc Id: ENSMUST00000242752
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl294,082,218 - 94,095,374 (-)Ensembl
RefSeq Acc Id: ENSMUST00000244043
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl293,990,981 - 94,009,271 (-)Ensembl
RefSeq Acc Id: ENSMUST00000245008
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl294,082,223 - 94,095,084 (-)Ensembl
RefSeq Acc Id: ENSMUST00000246180
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl294,082,220 - 94,095,374 (-)Ensembl
RefSeq Acc Id: XR_001783417
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39293,990,981 - 94,095,445 (-)NCBI
GRCm38294,160,636 - 94,265,102 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001783418
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39293,990,981 - 94,095,446 (-)NCBI
GRCm38294,160,636 - 94,265,103 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001783420
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39294,030,214 - 94,095,446 (-)NCBI
GRCm38294,200,737 - 94,265,103 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001783421
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39294,032,032 - 94,095,445 (-)NCBI
GRCm38294,201,695 - 94,265,103 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003953876
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39293,990,981 - 94,095,445 (-)NCBI
GRCm38294,160,636 - 94,265,103 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003953877
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39293,990,981 - 94,095,429 (-)NCBI
GRCm38294,160,636 - 94,265,090 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003953878
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39293,990,981 - 94,095,446 (-)NCBI
GRCm38294,160,636 - 94,265,103 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003953879
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39293,990,981 - 94,095,430 (-)NCBI
GRCm38294,160,636 - 94,265,090 (-)NCBI
Sequence:
RefSeq Acc Id: XR_866566
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39293,990,981 - 94,095,428 (-)NCBI
GRCm38294,160,636 - 94,265,088 (-)NCBI
Sequence:
Protein Sequences
GenBank Protein BAE24358 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences

Promoters
RGD ID:15092377
Promoter ID:EPDNEWNC_M289
Type:single initiation site
Name:Mir670hg_1
Description:MIR670 host gene (non-protein coding) [Source:MGISymbol;Acc:MGI:3041234]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38294,178,914 - 94,178,974EPDNEWNC
RGD ID:15092376
Promoter ID:EPDNEWNC_M290
Type:initiation region
Name:Mir670hg_2
Description:MIR670 host gene (non-protein coding) [Source:MGISymbol;Acc:MGI:3041234]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38294,264,725 - 94,264,785EPDNEWNC
RGD ID:6878012
Promoter ID:EPDNEW_M2457
Type:initiation region
Name:AK140370_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38294,264,758 - 94,264,818EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3041234 AgrOrtholog
Ensembl Genes ENSMUSG00000075020 Ensembl
MGD MGI:3041234 ENTREZGENE
NCBI Gene 414123 ENTREZGENE
PhenoGen Mir670hg PhenoGen
UniProt Q3USH4_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-04 Mir670hg  MIR670 host gene (non-protein coding)  E530001K10Rik  RIKEN cDNA E530001K10 gene  Symbol and/or name change 5135510 APPROVED