I830077J02Rik (RIKEN cDNA I830077J02 gene) - Rat Genome Database

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Gene: I830077J02Rik (RIKEN cDNA I830077J02 gene) Mus musculus
Analyze
Symbol: I830077J02Rik
Name: RIKEN cDNA I830077J02 gene
RGD ID: 1617918
MGI Page MGI
Description: Predicted to be located in membrane. Orthologous to human C1orf162 (chromosome 1 open reading frame 162).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: transmembrane protein C1orf162 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393105,831,568 - 105,840,039 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3105,831,674 - 105,839,980 (-)EnsemblGRCm39 Ensembl
GRCm383105,924,252 - 105,932,765 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3105,924,358 - 105,932,664 (-)EnsemblGRCm38mm10GRCm38
MGSCv373105,728,809 - 105,735,582 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363106,053,947 - 106,060,722 (-)NCBIMGSCv36mm8
Celera3108,114,781 - 108,123,011 (-)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map346.45NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:16602821   PMID:21267068  


Genomics

Comparative Map Data
I830077J02Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393105,831,568 - 105,840,039 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3105,831,674 - 105,839,980 (-)EnsemblGRCm39 Ensembl
GRCm383105,924,252 - 105,932,765 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3105,924,358 - 105,932,664 (-)EnsemblGRCm38mm10GRCm38
MGSCv373105,728,809 - 105,735,582 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363106,053,947 - 106,060,722 (-)NCBIMGSCv36mm8
Celera3108,114,781 - 108,123,011 (-)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map346.45NCBI
C1orf162
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381111,473,984 - 111,478,512 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1111,473,792 - 111,478,512 (+)EnsemblGRCh38hg38GRCh38
GRCh371112,016,606 - 112,021,134 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361111,818,127 - 111,822,657 (+)NCBINCBI36Build 36hg18NCBI36
Celera1110,263,526 - 110,268,056 (+)NCBICelera
Cytogenetic Map1p13.2NCBI
HuRef1109,888,054 - 109,892,582 (+)NCBIHuRef
CHM1_11112,131,612 - 112,136,141 (+)NCBICHM1_1
T2T-CHM13v2.01111,481,202 - 111,493,194 (+)NCBIT2T-CHM13v2.0
C2h1orf162
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82196,101,669 - 196,107,404 (-)NCBIGRCr8
mRatBN7.22193,410,730 - 193,420,824 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2193,412,971 - 193,420,030 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.02208,554,849 - 208,562,862 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02227,976,693 - 227,982,965 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42201,184,493 - 201,186,788 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2186,114,747 - 186,122,734 (-)NCBICelera
Cytogenetic Map2q34NCBI
LOC102028461
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543514,959,565 - 14,961,582 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543514,955,487 - 14,962,007 (+)NCBIChiLan1.0ChiLan1.0
C1H1orf162
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21115,549,334 - 115,561,334 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11114,698,141 - 114,710,570 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01114,125,229 - 114,139,845 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11126,207,207 - 126,218,124 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1126,207,207 - 126,218,124 (-)Ensemblpanpan1.1panPan2
C17H1orf162
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11763,919,145 - 63,921,801 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1763,919,131 - 63,921,488 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1763,432,734 - 63,437,587 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01765,090,642 - 65,095,497 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1765,090,628 - 65,092,987 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11763,825,571 - 63,830,422 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01763,884,452 - 63,889,343 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01764,682,525 - 64,687,422 (-)NCBIUU_Cfam_GSD_1.0
CUNH1orf162
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505817,328,372 - 17,335,456 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936690144,885 - 146,904 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936690141,718 - 146,923 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C4H1orf162
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.14108,875,702 - 108,886,098 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24119,057,620 - 119,064,197 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH1orf162
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12022,131,900 - 22,136,641 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2022,131,902 - 22,136,465 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603836,342,568 - 36,347,220 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH1orf162
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247727,190,804 - 7,192,981 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247727,182,882 - 7,193,349 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in I830077J02Rik
285 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:257
Count of miRNA genes:224
Interacting mature miRNAs:236
Transcripts:ENSMUST00000098758, ENSMUST00000126230
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372139967106140094Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372139967106140094Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391000105125008748Mouse
1301349Pgia26_mproteoglycan induced arthritis 26 (mouse)Not determined392251533126251650Mouse
27226732Tibmd3_mtibia midshaft diameter 3, 10 week (mouse)396607316147805636Mouse
10043955Wt10q4_mbody weight, 10 weeks, QTL 4 (mouse)Not determined398624041132624197Mouse
11533920Mvb3_mmodifier of vibrator 3 (mouse)398635284132635383Mouse
12792984Modn1_mmodifier of Dstn neovascularization 1 (mouse)398635284132635383Mouse
1302114Tbs1_mtuberculosis severity 1 (mouse)Not determined398924105132924250Mouse
1300752Ap6q_malcohol preference 6 QTL (mouse)Not determined3100372912147045722Mouse
26884419Bzwq6_mbi-zygomatic width QTL 6, 10 week (mouse)3100607316137205761Mouse
27226733Tibmd6_mtibia midshaft diameter 6, 16 week (mouse)3101307316149805637Mouse
1301805Mors2_mmodifier of obesity related sterility 2 (mouse)Not determined3103482659137482783Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000098758   ⟹   ENSMUSP00000096354
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3105,831,674 - 105,839,980 (-)Ensembl
GRCm38.p6 Ensembl3105,924,358 - 105,932,664 (-)Ensembl
RefSeq Acc Id: ENSMUST00000126230
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3105,835,019 - 105,839,932 (-)Ensembl
GRCm38.p6 Ensembl3105,927,703 - 105,932,616 (-)Ensembl
RefSeq Acc Id: ENSMUST00000196099   ⟹   ENSMUSP00000142349
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3105,833,733 - 105,835,332 (-)Ensembl
GRCm38.p6 Ensembl3105,926,417 - 105,928,016 (-)Ensembl
RefSeq Acc Id: NM_001033780   ⟹   NP_001028952
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393105,833,207 - 105,839,980 (-)NCBI
GRCm383105,925,891 - 105,932,664 (-)NCBI
MGSCv373105,728,809 - 105,735,582 (-)RGD
Celera3108,114,781 - 108,123,011 (-)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006501647   ⟹   XP_006501710
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393105,831,568 - 105,839,423 (-)NCBI
GRCm383105,924,252 - 105,932,107 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006501648   ⟹   XP_006501711
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393105,831,568 - 105,840,039 (-)NCBI
GRCm383105,924,252 - 105,932,765 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001028952   ⟸   NM_001033780
- UniProtKB: B2RWJ4 (UniProtKB/Swiss-Prot),   Q3U7U4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006501711   ⟸   XM_006501648
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006501710   ⟸   XM_006501647
- Peptide Label: isoform X1
- UniProtKB: B2RWJ4 (UniProtKB/Swiss-Prot),   Q3U7U4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000142349   ⟸   ENSMUST00000196099
RefSeq Acc Id: ENSMUSP00000096354   ⟸   ENSMUST00000098758

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3U7U4-F1-model_v2 AlphaFold Q3U7U4 1-132 view protein structure

Promoters
RGD ID:6833993
Promoter ID:MM_KWN:35660
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Spleen
Transcripts:ENSMUST00000098758,   OTTMUST00000065853
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363105,735,311 - 105,735,811 (-)MPROMDB
RGD ID:6881950
Promoter ID:EPDNEW_M4426
Type:initiation region
Name:I830077J02Rik_1
Description:Mus musculus RIKEN cDNA I830077J02 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383105,932,599 - 105,932,659EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3588284 AgrOrtholog
Ensembl Genes ENSMUSG00000074342 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000098758 ENTREZGENE
  ENSMUST00000098758.5 UniProtKB/Swiss-Prot
  ENSMUST00000196099.2 UniProtKB/TrEMBL
InterPro C1orf162 UniProtKB/Swiss-Prot
KEGG Report mmu:433638 UniProtKB/Swiss-Prot
MGD MGI:3588284 ENTREZGENE
NCBI Gene 433638 ENTREZGENE
PANTHER PTHR37997 UniProtKB/Swiss-Prot
  TRANSMEMBRANE PROTEIN C1ORF162 UniProtKB/Swiss-Prot
PhenoGen I830077J02Rik PhenoGen
UniProt A0A0G2JDF6_MOUSE UniProtKB/TrEMBL
  B2RWJ4 ENTREZGENE
  CA162_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary B2RWJ4 UniProtKB/Swiss-Prot