D16Ertd472e (DNA segment, Chr 16, ERATO Doi 472, expressed) - Rat Genome Database

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Gene: D16Ertd472e (DNA segment, Chr 16, ERATO Doi 472, expressed) Mus musculus
Analyze
Symbol: D16Ertd472e
Name: DNA segment, Chr 16, ERATO Doi 472, expressed
RGD ID: 1617559
MGI Page MGI
Description: Involved in cerebral cortex neuron differentiation and positive regulation of dendritic spine development. Is expressed in several structures, including alimentary system; brain; genitourinary system; integumental system; and sensory organ. Orthologous to human C21orf91 (chromosome 21 open reading frame 91).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700010I10Rik; 2310009O17Rik; AI256766; AW536354; E330003K22Rik; Eurl; EURL protein homolog; protein EURL homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391678,337,224 - 78,373,576 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1678,337,226 - 78,373,596 (-)EnsemblGRCm39 Ensembl
GRCm381678,540,336 - 78,576,688 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1678,540,338 - 78,576,708 (-)EnsemblGRCm38mm10GRCm38
MGSCv371678,540,583 - 78,576,913 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361678,426,122 - 78,459,239 (-)NCBIMGSCv36mm8
Celera1678,762,071 - 78,791,896 (-)NCBICelera
Cytogenetic Map16C3.1NCBI
cM Map1645.36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12466854   PMID:12466855   PMID:12477932   PMID:12520002  
PMID:14610273   PMID:14681479   PMID:14691545   PMID:16141072   PMID:16141073   PMID:18799693   PMID:20360068   PMID:21267068   PMID:21677750   PMID:26238476   PMID:27404227   PMID:32554809  


Genomics

Comparative Map Data
D16Ertd472e
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391678,337,224 - 78,373,576 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1678,337,226 - 78,373,596 (-)EnsemblGRCm39 Ensembl
GRCm381678,540,336 - 78,576,688 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1678,540,338 - 78,576,708 (-)EnsemblGRCm38mm10GRCm38
MGSCv371678,540,583 - 78,576,913 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361678,426,122 - 78,459,239 (-)NCBIMGSCv36mm8
Celera1678,762,071 - 78,791,896 (-)NCBICelera
Cytogenetic Map16C3.1NCBI
cM Map1645.36NCBI
C21orf91
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382117,788,974 - 17,819,356 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2117,788,974 - 17,819,386 (-)EnsemblGRCh38hg38GRCh38
GRCh372119,161,291 - 19,191,673 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362118,083,155 - 18,113,574 (-)NCBINCBI36Build 36hg18NCBI36
Build 342118,086,994 - 18,112,513NCBI
Celera214,339,748 - 4,370,167 (-)NCBICelera
Cytogenetic Map21q21.1NCBI
HuRef214,550,222 - 4,580,642 (-)NCBIHuRef
CHM1_12118,722,458 - 18,752,865 (-)NCBICHM1_1
T2T-CHM13v2.02116,148,342 - 16,178,714 (-)NCBIT2T-CHM13v2.0
C11h21orf91
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81130,716,034 - 30,749,292 (-)NCBIGRCr8
mRatBN7.21117,229,129 - 17,262,307 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1117,229,138 - 17,262,483 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1125,878,233 - 25,911,298 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01118,610,326 - 18,643,400 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01117,769,043 - 17,802,121 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01117,073,296 - 17,120,235 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1117,076,980 - 17,130,120 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01120,732,095 - 20,735,084 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41117,446,314 - 17,476,625 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1117,221,974 - 17,249,856 (-)NCBICelera
Cytogenetic Map11q11NCBI
LOC102013799
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540719,094,101 - 19,124,370 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540719,093,931 - 19,124,997 (-)NCBIChiLan1.0ChiLan1.0
C22H21orf91
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22214,283,766 - 14,314,161 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1219,111,542 - 9,141,925 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0214,524,103 - 4,554,496 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12117,877,448 - 17,918,985 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2117,888,992 - 17,918,985 (-)Ensemblpanpan1.1panPan2
C31H21orf91
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13114,225,807 - 14,254,801 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3114,230,000 - 14,254,756 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3114,239,257 - 14,267,958 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03114,253,948 - 14,282,661 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3114,253,990 - 14,282,587 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13114,256,210 - 14,284,885 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03114,261,717 - 14,290,398 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03114,666,956 - 14,695,648 (-)NCBIUU_Cfam_GSD_1.0
CUNH21orf91
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497115,271,247 - 15,299,794 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650510,194,961 - 10,219,126 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650510,190,248 - 10,219,502 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C13H21orf91
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13182,374,587 - 182,409,289 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113182,374,587 - 182,409,062 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213192,507,038 - 192,540,595 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH21orf91
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1274,773,057 - 74,802,684 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl274,773,356 - 74,807,405 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605079,188,089 - 79,218,635 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH21orf91
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247456,185,226 - 6,201,376 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247456,180,514 - 6,213,299 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in D16Ertd472e
1089 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:390
Count of miRNA genes:254
Interacting mature miRNAs:264
Transcripts:ENSMUST00000114218, ENSMUST00000114219, ENSMUST00000114220
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
1357517Bwtn1_mbody weight at necropsy 1 (mouse)Not determined162001932985600826Mouse
1302096Aod1a_mautoimmune ovarian dysgenesis 1a (mouse)Not determined163544664392573008Mouse
26884416Bzwq5_mbi-zygomatic width QTL 5, 5 week (mouse)163732036284696888Mouse
1357778Diobq_mdiet-induced obesity QTL (mouse)Not determined164219781782331174Mouse
4141212Imraq3_mimmune response to AAV2 QTL 3 (mouse)Not determined164438335078383506Mouse
1301719Remslp3_mrapid eye movement sleep 3 (mouse)Not determined164438335078383506Mouse
14928310Manh80_mmandible shape 80 (mouse)164821984182219841Mouse
1301394Eae11_msusceptibility to experimental allergic encephalomyelitis 11 (mouse)Not determined165356189187562035Mouse
1301364Lith14_mlithogenic gene 14 (mouse)Not determined165566184689661961Mouse
1301125Sluc27_msusceptibility to lung cancer 27 (mouse)Not determined166160864495608764Mouse
4141113Tgq28_mtriglyceride QTL 28 (mouse)Not determined6298664696986646Mouse
1300928Etia_methanol induced activation (mouse)Not determined166331390797314016Mouse
1558740Bpq9_mblood pressure QTL 9 (mouse)Not determined166332733697327472Mouse
1302194Pgia10_mproteoglycan induced arthritis 10 (mouse)Not determined166860072298008968Mouse
1301032Tauph_mtau phosphorylation (mouse)Not determined166907613298008968Mouse
11049573Lmr18b_mleishmaniasis resistance 18b (mouse)166912761198008968Mouse
11049574Lmr18a_mleishmaniasis resistance 18a (mouse)166912761198008968Mouse
4142262Lmr18_mleishmaniasis resistance 18 (mouse)Not determined166912761198008968Mouse
11522753Cocia19_mcocaine-induced activity, QTL 19 (mouse)166925448298008968Mouse
1301598Renf2_mrenal failure 2 (mouse)Not determined167038025298008968Mouse
10412076Pod_mplasticity of ocular dominance (mouse)Not determined167354484584350326Mouse
12880403Sefq1_mstress effect QTL 1 (mouse)167469664378896643Mouse

Markers in Region
RH136091  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381678,544,738 - 78,544,907UniSTSGRCm38
MGSCv371678,544,983 - 78,545,152UniSTSGRCm37
Celera1678,766,470 - 78,766,639UniSTS
Cytogenetic Map16C3.1UniSTS
AW536354  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381678,547,796 - 78,547,884UniSTSGRCm38
MGSCv371678,548,041 - 78,548,129UniSTSGRCm37
Celera1678,769,520 - 78,769,608UniSTS
Cytogenetic Map16C3.1UniSTS
Whitehead/MRC_RH16861.45UniSTS
C86956  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381678,544,982 - 78,545,203UniSTSGRCm38
MGSCv371678,545,227 - 78,545,448UniSTSGRCm37
Celera1678,766,714 - 78,766,935UniSTS
Cytogenetic Map16C3.1UniSTS
cM Map1645.5UniSTS
Whitehead/MRC_RH16862.4UniSTS
D16Ertd472e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16C3.1UniSTS
Arf1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381678,544,136 - 78,544,512UniSTSGRCm38
MGSCv371678,544,381 - 78,544,757UniSTSGRCm37
Celera1678,765,868 - 78,766,244UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map16C3.1UniSTS
cM Map11 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001252438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001252439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001252440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_025967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC098883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK005829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK021334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK086363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW536354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC019957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG078224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN662712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000114218   ⟹   ENSMUSP00000109856
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1678,341,849 - 78,373,545 (-)Ensembl
GRCm38.p6 Ensembl1678,544,961 - 78,576,657 (-)Ensembl
RefSeq Acc Id: ENSMUST00000114219   ⟹   ENSMUSP00000109857
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1678,341,577 - 78,373,545 (-)Ensembl
GRCm38.p6 Ensembl1678,544,689 - 78,576,657 (-)Ensembl
RefSeq Acc Id: ENSMUST00000114220   ⟹   ENSMUSP00000109858
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1678,340,431 - 78,373,535 (-)Ensembl
GRCm38.p6 Ensembl1678,543,543 - 78,576,647 (-)Ensembl
RefSeq Acc Id: ENSMUST00000231272   ⟹   ENSMUSP00000156262
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1678,344,594 - 78,373,596 (-)Ensembl
GRCm38.p6 Ensembl1678,547,706 - 78,576,708 (-)Ensembl
RefSeq Acc Id: ENSMUST00000231973   ⟹   ENSMUSP00000156370
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1678,337,226 - 78,373,522 (-)Ensembl
GRCm38.p6 Ensembl1678,540,338 - 78,576,634 (-)Ensembl
RefSeq Acc Id: ENSMUST00000232052   ⟹   ENSMUSP00000156198
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1678,337,226 - 78,373,545 (-)Ensembl
GRCm38.p6 Ensembl1678,540,338 - 78,576,657 (-)Ensembl
RefSeq Acc Id: ENSMUST00000232329
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1678,344,793 - 78,357,132 (-)Ensembl
GRCm38.p6 Ensembl1678,547,905 - 78,560,244 (-)Ensembl
RefSeq Acc Id: ENSMUST00000232528   ⟹   ENSMUSP00000156192
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1678,341,843 - 78,373,522 (-)Ensembl
GRCm38.p6 Ensembl1678,544,955 - 78,576,634 (-)Ensembl
RefSeq Acc Id: NM_001252438   ⟹   NP_001239367
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391678,337,224 - 78,373,576 (-)NCBI
GRCm381678,540,336 - 78,576,688 (-)ENTREZGENE
Celera1678,762,069 - 78,791,916 (-)ENTREZGENE
cM Map16 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001252439   ⟹   NP_001239368
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391678,337,224 - 78,373,576 (-)NCBI
GRCm381678,540,336 - 78,576,688 (-)ENTREZGENE
Celera1678,762,069 - 78,791,916 (-)ENTREZGENE
cM Map16 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001252440   ⟹   NP_001239369
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391678,337,224 - 78,373,576 (-)NCBI
GRCm381678,540,336 - 78,576,688 (-)ENTREZGENE
Celera1678,762,069 - 78,791,916 (-)ENTREZGENE
cM Map16 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_025967   ⟹   NP_080243
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391678,337,224 - 78,373,576 (-)NCBI
GRCm381678,540,336 - 78,576,688 (-)ENTREZGENE
MGSCv371678,540,583 - 78,576,913 (-)RGD
Celera1678,762,069 - 78,791,916 (-)ENTREZGENE
cM Map16 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_080243   ⟸   NM_025967
- UniProtKB: Q9D7G4 (UniProtKB/Swiss-Prot),   Q8VE27 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001239369   ⟸   NM_001252440
- UniProtKB: Q9D7G4 (UniProtKB/Swiss-Prot),   Q8VE27 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001239368   ⟸   NM_001252439
- UniProtKB: Q9D7G4 (UniProtKB/Swiss-Prot),   Q8VE27 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001239367   ⟸   NM_001252438
- UniProtKB: Q9D7G4 (UniProtKB/Swiss-Prot),   Q8VE27 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000156370   ⟸   ENSMUST00000231973
RefSeq Acc Id: ENSMUSP00000156262   ⟸   ENSMUST00000231272
RefSeq Acc Id: ENSMUSP00000156198   ⟸   ENSMUST00000232052
RefSeq Acc Id: ENSMUSP00000156192   ⟸   ENSMUST00000232528
RefSeq Acc Id: ENSMUSP00000109856   ⟸   ENSMUST00000114218
RefSeq Acc Id: ENSMUSP00000109857   ⟸   ENSMUST00000114219
RefSeq Acc Id: ENSMUSP00000109858   ⟸   ENSMUST00000114220

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D7G4-F1-model_v2 AlphaFold Q9D7G4 1-290 view protein structure

Promoters
RGD ID:13674266
Promoter ID:EPDNEW_M21282
Type:initiation region
Name:D16Ertd472e_1
Description:Mus musculus DNA segment, Chr 16, ERATO Doi 472, expressed ,transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381678,576,659 - 78,576,719EPDNEW
RGD ID:6826949
Promoter ID:MM_KWN:21484
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000023571,   ENSMUST00000114218,   UC007ZSQ.1,   UC007ZSR.1,   UC007ZSS.1,   UC007ZST.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361678,576,771 - 78,577,357 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1196400 AgrOrtholog
Ensembl Genes ENSMUSG00000022864 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000114218 ENTREZGENE
  ENSMUST00000114218.2 UniProtKB/Swiss-Prot
  ENSMUST00000114219 ENTREZGENE
  ENSMUST00000114219.8 UniProtKB/Swiss-Prot
  ENSMUST00000114220 ENTREZGENE
  ENSMUST00000114220.9 UniProtKB/Swiss-Prot
  ENSMUST00000231272.2 UniProtKB/TrEMBL
  ENSMUST00000231973.2 UniProtKB/Swiss-Prot
  ENSMUST00000232052 ENTREZGENE
  ENSMUST00000232052.2 UniProtKB/Swiss-Prot
  ENSMUST00000232528.2 UniProtKB/TrEMBL
InterPro EURL_prot UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:67102 UniProtKB/Swiss-Prot
MGD MGI:1196400 ENTREZGENE
NCBI Gene 67102 ENTREZGENE
PANTHER PROTEIN EURL HOMOLOG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR15961 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam EURL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen D16Ertd472e PhenoGen
UniProt A0A338P6Y7_MOUSE UniProtKB/TrEMBL
  A0A338P742_MOUSE UniProtKB/TrEMBL
  EURL_MOUSE UniProtKB/Swiss-Prot
  Q8VE27 ENTREZGENE, UniProtKB/TrEMBL
  Q9D7G4 ENTREZGENE
  Q9DAH7_MOUSE UniProtKB/TrEMBL