Sox6os (SRY (sex determining region Y)-box 6, opposite strand) - Rat Genome Database

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Gene: Sox6os (SRY (sex determining region Y)-box 6, opposite strand) Mus musculus
Analyze
Symbol: Sox6os
Name: SRY (sex determining region Y)-box 6, opposite strand
RGD ID: 1617541
MGI Page MGI
Description: INTERACTS WITH (1->4)-beta-D-glucan; 4-hydroxyphenyl retinamide; carbon nanotube
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: 1110006G14Rik; RIKEN cDNA 1110006G14 gene
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397115,631,214 - 115,631,785 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7115,631,214 - 115,631,785 (+)EnsemblGRCm39 Ensembl
GRCm387116,031,979 - 116,032,550 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7116,031,979 - 116,032,550 (+)EnsemblGRCm38mm10GRCm38
MGSCv377123,162,552 - 123,176,064 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367115,737,729 - 115,823,699 (+)NCBIMGSCv36mm8
Celera7115,971,670 - 115,979,697 (+)NCBICelera
Cytogenetic Map7F1NCBI
cM Map761.42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

Variants

.
Variants in Sox6os
9 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:101
Count of miRNA genes:98
Interacting mature miRNAs:101
Transcripts:ENSMUST00000032900
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)774849748122199223Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
27095923Pglq3_mpelvic girdle length QTL 3, 5 week (mouse)781249748124199223Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse
27226763Feml20_mfemur length 20, 16 week (mouse)785049208124199223Mouse
1301647Elpt_melevated leptin (mouse)Not determined786500186120500329Mouse
1301188Heal6_mwound healing/regeneration 6 (mouse)Not determined787043932121044066Mouse
1302062Stheal6_msoft tissue heal 6 (mouse)Not determined787043932121044066Mouse
13463473Hbbcq4_mhemoglobin concentration QTL 4 (mouse)787043932121044066Mouse
1301781Capsq3_mcapsaicin sensitivity related QTL 3 (mouse)Not determined787143137119485380Mouse
27226769Tibl12_mtibia length 12, 10 week (mouse)787249208126499172Mouse
27226790Feml15_mfemur length 15, 10 week (mouse)787249208126499172Mouse
1357664Nba3_mNew Zealand Black autoimmunity 3 (mouse)Not determined791482996125483156Mouse
1301937Skull10_mskull morphology 10 (mouse)Not determined791482996125483156Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793391848127392041Mouse
1301478Eae26_msusceptibility to experimental allergic encephalomyelitis 26 (mouse)Not determined798164922132165010Mouse
13524850Asrq7_macoustic startle response 7 (mouse)798394974132394974Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined799837716133837716Mouse
11039524Tbbr3_mTrypanosoma brucei brucei response 3 (mouse)7100750722134750843Mouse
1301447Fembm3_mfemoral bone morphometry 3 (mouse)Not determined7100993261134993342Mouse
1357460Vtbt4_mvertebral trabecular bone trait 4 (mouse)Not determined7101693381135693530Mouse
1301105Cfld4_mcystic fibrosis lung disease 4 (mouse)Not determined7101693381135693530Mouse
1300721Cfbw3_mcystic fibrosis body weight 3 (mouse)Not determined7101693381135693530Mouse
4142312Nilac4_mnicotine induced locomotor activity 4 (mouse)Not determined7102485219136485380Mouse
5491192Mobq1_mmultigenic obesity QTL 1 (mouse)Not determined7105250663139250811Mouse
13524852Asrq7a_macoustic startle response 7a (mouse)7105350008139350008Mouse
4141056Lskcn2_mLSK cell number 2 (mouse)Not determined108482996118693530Mouse
14700684Civq1_mcerebral infarct volume QTL 1 (mouse)7109707335143707335Mouse
14700687Civq5_mcerebral infarct volume QTL 5 (mouse)7109707335143707335Mouse
14700688Civq6_mcerebral infarct volume QTL 6 (mouse)7109707335143707335Mouse
11059562Lmr21b_mleishmaniasis resistance 21b (mouse)7110967235144967336Mouse
10402499Lmr21_mleishmaniasis resistance 21 (mouse)Not determined7110967235144967336Mouse
1302032Alcp12_malcohol preference locus 12 (mouse)Not determined7111166122144995196Mouse
1301898Alcp14_malcohol preference locus 14 (mouse)Not determined7111166122144995196Mouse
1300670Sluc19_msusceptibility to lung cancer 19 (mouse)Not determined7111166122144995196Mouse
4142444Femwf5_mfemur work to failure 5 (mouse)Not determined112552248144995196Mouse
1300747Skts2_mskin tumor susceptibility 2 (mouse)Not determined7112922733144995196Mouse

Markers in Region
09.MMHAP57FRC9.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387116,005,940 - 116,006,090UniSTSGRCm38
MGSCv377123,149,454 - 123,149,604UniSTSGRCm37
Celera7115,952,962 - 115,953,112UniSTS
Cytogenetic Map7F1UniSTS
cM Map755.0UniSTS
Whitehead_YAC7 UniSTS
RH125939  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387116,018,956 - 116,019,166UniSTSGRCm38
GRCm382119,135,744 - 119,135,960UniSTSGRCm38
MGSCv377123,162,470 - 123,162,680UniSTSGRCm37
MGSCv372118,961,480 - 118,961,696UniSTSGRCm37
Celera2120,286,275 - 120,286,491UniSTS
Celera7115,966,033 - 115,966,249UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map2F1UniSTS
cM Map755.0UniSTS
cM Map266.8UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000032900
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7115,631,214 - 115,631,785 (+)Ensembl
GRCm38.p6 Ensembl7116,031,979 - 116,032,550 (+)Ensembl
RefSeq Acc Id: NR_152104
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397115,631,214 - 115,631,785 (+)NCBI
GRCm387116,031,979 - 116,032,550 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein BAB22822 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences

Promoters
RGD ID:15093319
Promoter ID:EPDNEWNC_M1238
Type:multiple initiation site
Name:Sox6os_1
Description:SRY (sex determining region Y)-box 6, opposite strand[Source:MGI Symbol;Acc:MGI:1915719]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387116,031,939 - 116,031,999EPDNEWNC
RGD ID:6840208
Promoter ID:MM_KWN:52396
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:ENSMUST00000032900
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367123,175,321 - 123,175,821 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000030664 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000032900 ENTREZGENE
MGD MGI:1915719 ENTREZGENE
NCBI Gene 68469 ENTREZGENE
PhenoGen Sox6os PhenoGen
RNAcentral URS0000761298 RNACentral
UniProt Q9CTI5_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-04 Sox6os  SRY (sex determining region Y)-box 6, opposite strand  1110006G14Rik  RIKEN cDNA 1110006G14 gene  Symbol and/or name change 5135510 APPROVED