Atg16l2 (autophagy related 16 like 2) - Rat Genome Database

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Gene: Atg16l2 (autophagy related 16 like 2) Mus musculus
Analyze
Symbol: Atg16l2
Name: autophagy related 16 like 2 (Ensembl:autophagy related 16-like 2 (S. cerevisiae))
RGD ID: 1617481
MGI Page MGI
Description: Involved in autophagosome assembly. Acts upstream of or within negative stranded viral RNA replication. Located in cytosol and phagophore assembly site membrane. Part of Atg12-Atg5-Atg16 complex. Is expressed in embryo. Orthologous to human ATG16L2 (autophagy related 16 like 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2410118P20Rik; APG16-like 2; Atg16L2 alpha; Atg16L2 beta; autophagy related 16-like 2; autophagy related 16-like 2 (S. cerevisiae); autophagy-related 16-like 2 alpha; autophagy-related 16-like 2 beta; autophagy-related protein 16-2; mFLJ00012 protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397100,935,521 - 100,951,474 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7100,912,241 - 100,951,458 (-)EnsemblGRCm39 Ensembl
GRCm387101,286,325 - 101,302,267 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7101,263,034 - 101,302,251 (-)EnsemblGRCm38mm10GRCm38
MGSCv377108,438,130 - 108,450,602 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367101,163,310 - 101,176,338 (-)NCBIMGSCv36mm8
Celera7101,645,700 - 101,658,255 (-)NCBICelera
Cytogenetic Map7E2NCBI
cM Map754.54NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
2. LC3 conjugation system in mammalian autophagy. Tanida I, etal., Int J Biochem Cell Biol. 2004 Dec;36(12):2503-18.
3. Mammalian autophagy: core molecular machinery and signaling regulation. Yang Z and Klionsky DJ, Curr Opin Cell Biol. 2010 Apr;22(2):124-31. Epub 2009 Dec 23.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11266458   PMID:12466851   PMID:12477932   PMID:12665549   PMID:14610273   PMID:15449545   PMID:15747579   PMID:16141072  
PMID:16141073   PMID:18799693   PMID:21677750   PMID:21873635   PMID:22008794   PMID:22082872   PMID:22904094   PMID:23563314   PMID:24550300   PMID:29078390   PMID:30196744   PMID:30973865  
PMID:31451676   PMID:35426127   PMID:38355793  


Genomics

Comparative Map Data
Atg16l2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397100,935,521 - 100,951,474 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7100,912,241 - 100,951,458 (-)EnsemblGRCm39 Ensembl
GRCm387101,286,325 - 101,302,267 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7101,263,034 - 101,302,251 (-)EnsemblGRCm38mm10GRCm38
MGSCv377108,438,130 - 108,450,602 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367101,163,310 - 101,176,338 (-)NCBIMGSCv36mm8
Celera7101,645,700 - 101,658,255 (-)NCBICelera
Cytogenetic Map7E2NCBI
cM Map754.54NCBI
ATG16L2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381172,814,411 - 72,843,740 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1172,814,406 - 72,843,674 (+)EnsemblGRCh38hg38GRCh38
GRCh371172,525,456 - 72,540,680 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361172,203,099 - 72,218,328 (+)NCBINCBI36Build 36hg18NCBI36
Celera1169,829,970 - 69,845,200 (+)NCBICelera
Cytogenetic Map11q13.4NCBI
HuRef1168,820,560 - 68,835,784 (+)NCBIHuRef
CHM1_11172,409,218 - 72,424,444 (+)NCBICHM1_1
T2T-CHM13v2.01172,742,639 - 72,773,369 (+)NCBIT2T-CHM13v2.0
Atg16l2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81165,100,946 - 165,123,307 (-)NCBIGRCr8
mRatBN7.21155,687,386 - 155,703,419 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1155,684,564 - 155,703,420 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1163,675,751 - 163,688,057 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01170,855,837 - 170,868,143 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01163,740,004 - 163,752,309 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01166,401,271 - 166,415,078 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1166,401,271 - 166,413,564 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01172,590,904 - 172,604,849 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41158,787,778 - 158,800,330 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11158,867,019 - 158,879,347 (-)NCBI
Celera1153,773,419 - 153,785,720 (-)NCBICelera
Cytogenetic Map1q32NCBI
Atg16l2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541418,604,505 - 18,618,046 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541418,600,904 - 18,618,048 (-)NCBIChiLan1.0ChiLan1.0
ATG16L2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2973,759,803 - 73,790,614 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11174,805,313 - 74,834,038 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01167,893,365 - 67,921,794 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11171,115,768 - 71,144,128 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1171,115,768 - 71,131,081 (+)Ensemblpanpan1.1panPan2
ATG16L2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12125,404,667 - 25,433,456 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2125,405,694 - 25,419,896 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2125,174,599 - 25,197,690 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02125,611,832 - 25,635,160 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2125,613,100 - 25,627,309 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12125,401,211 - 25,419,203 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02125,604,504 - 25,630,698 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02125,521,019 - 25,536,014 (-)NCBIUU_Cfam_GSD_1.0
Atg16l2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494760,450,871 - 60,484,655 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364982,070,881 - 2,083,968 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364982,070,985 - 2,084,141 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATG16L2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl97,347,002 - 7,365,625 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.197,346,973 - 7,360,189 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.298,108,638 - 8,122,152 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATG16L2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,051,793 - 64,066,204 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl164,052,390 - 64,065,972 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604361,815,791 - 61,831,248 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atg16l2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248174,140,543 - 4,147,597 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248174,123,963 - 4,153,720 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Atg16l2
587 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3057
Count of miRNA genes:759
Interacting mature miRNAs:1011
Transcripts:ENSMUST00000120267, ENSMUST00000122116, ENSMUST00000123835, ENSMUST00000123970, ENSMUST00000124617, ENSMUST00000131988, ENSMUST00000134531, ENSMUST00000139609, ENSMUST00000140059, ENSMUST00000140553, ENSMUST00000143630, ENSMUST00000146445, ENSMUST00000151297, ENSMUST00000153327
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
25314305Vmm6_mvariable multisystem mineralization 6, eye (mouse)761849748102749207Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
1301826Pgia3_mproteoglycan induced arthritis 3 (mouse)Not determined767290094101290240Mouse
1301784Ses2_msalmonella enteritidis susceptibility 2 (mouse)Not determined767290094101290240Mouse
1300620Pgia21_mproteoglycan induced arthritis 21 (mouse)Not determined767290094101290240Mouse
26884418Bzwq7_mbi-zygomatic width QTL 7, 10 week (mouse)767849748105449207Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
1300654Bomd1_mbone mineral density 1 (mouse)Not determined768365595102365702Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse
1301155Bpq7_mblood pressure QTL 7 (mouse)Not determined770143137104143379Mouse
10043973Obq29_mobesity QTL 29 (mouse)Not determined772263372106263372Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
11553869Stmm2b_mskin tumor modifier of MSM 2a (mouse)773725965107725965Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)774849748122199223Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
1301566Adip3_madiposity 3 (mouse)Not determined775394215109394346Mouse
14746989Manh62_mmandible shape 62 (mouse)775742528109742528Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
10412110Cctq1_mcentral corneal thickness QTL 1 (mouse)Not determined780551681114551791Mouse
4142500Morq1_mmodifier of Rs1 QTL 1 (mouse)Not determined80551681114551791Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
27095923Pglq3_mpelvic girdle length QTL 3, 5 week (mouse)781249748124199223Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse
27226763Feml20_mfemur length 20, 16 week (mouse)785049208124199223Mouse
1301997Cia7_mcollagen induced arthritis QTL 7 (mouse)Not determined785365595112533819Mouse
1301647Elpt_melevated leptin (mouse)Not determined786500186120500329Mouse
1301188Heal6_mwound healing/regeneration 6 (mouse)Not determined787043932121044066Mouse
1302062Stheal6_msoft tissue heal 6 (mouse)Not determined787043932121044066Mouse
13463473Hbbcq4_mhemoglobin concentration QTL 4 (mouse)787043932121044066Mouse
1301781Capsq3_mcapsaicin sensitivity related QTL 3 (mouse)Not determined787143137119485380Mouse
27226769Tibl12_mtibia length 12, 10 week (mouse)787249208126499172Mouse
27226790Feml15_mfemur length 15, 10 week (mouse)787249208126499172Mouse
27095929Pglq8_mpelvic girdle length QTL 8, 10 week (mouse)787849208108099207Mouse
1357664Nba3_mNew Zealand Black autoimmunity 3 (mouse)Not determined791482996125483156Mouse
1301937Skull10_mskull morphology 10 (mouse)Not determined791482996125483156Mouse
13464255Ifvrq2_minfluenza virus resistance QTL 2 (mouse)792500698106455693Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793391848127392041Mouse
1301478Eae26_msusceptibility to experimental allergic encephalomyelitis 26 (mouse)Not determined798164922132165010Mouse
13524850Asrq7_macoustic startle response 7 (mouse)798394974132394974Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined799837716133837716Mouse
11039524Tbbr3_mTrypanosoma brucei brucei response 3 (mouse)7100750722134750843Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001111111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_152152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006508225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006508226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006508227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006508228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006508230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006508231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001778004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003946569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003946570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003946571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_378274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB476647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB476648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC107638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK131109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC054124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP767155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000120267   ⟹   ENSMUSP00000112500
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,934,528 - 100,951,295 (-)Ensembl
GRCm38.p6 Ensembl7101,285,321 - 101,302,088 (-)Ensembl
RefSeq Acc Id: ENSMUST00000122116   ⟹   ENSMUSP00000113320
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,938,824 - 100,951,278 (-)Ensembl
GRCm38.p6 Ensembl7101,289,617 - 101,302,071 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123835
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,945,435 - 100,946,376 (-)Ensembl
GRCm38.p6 Ensembl7101,296,228 - 101,297,169 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123970
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,939,851 - 100,941,350 (-)Ensembl
GRCm38.p6 Ensembl7101,290,644 - 101,292,143 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124617
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,938,824 - 100,939,666 (-)Ensembl
GRCm38.p6 Ensembl7101,289,617 - 101,290,459 (-)Ensembl
RefSeq Acc Id: ENSMUST00000131988
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,939,035 - 100,939,783 (-)Ensembl
GRCm38.p6 Ensembl7101,289,828 - 101,290,576 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134531
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,940,368 - 100,941,353 (-)Ensembl
GRCm38.p6 Ensembl7101,291,161 - 101,292,146 (-)Ensembl
RefSeq Acc Id: ENSMUST00000139609   ⟹   ENSMUSP00000117387
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,938,833 - 100,951,458 (-)Ensembl
GRCm38.p6 Ensembl7101,289,626 - 101,302,251 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140059
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,941,610 - 100,945,989 (-)Ensembl
GRCm38.p6 Ensembl7101,292,403 - 101,296,782 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140553   ⟹   ENSMUSP00000116414
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,946,102 - 100,951,278 (-)Ensembl
GRCm38.p6 Ensembl7101,296,895 - 101,302,071 (-)Ensembl
RefSeq Acc Id: ENSMUST00000143630   ⟹   ENSMUSP00000117029
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,938,599 - 100,951,234 (-)Ensembl
GRCm38.p6 Ensembl7101,289,392 - 101,302,027 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146445
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,942,593 - 100,945,919 (-)Ensembl
GRCm38.p6 Ensembl7101,293,386 - 101,296,712 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151297
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,941,211 - 100,945,976 (-)Ensembl
GRCm38.p6 Ensembl7101,292,004 - 101,296,769 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153327
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,940,782 - 100,941,595 (-)Ensembl
GRCm38.p6 Ensembl7101,291,575 - 101,292,388 (-)Ensembl
RefSeq Acc Id: ENSMUST00000207121   ⟹   ENSMUSP00000146572
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,948,213 - 100,951,258 (-)Ensembl
GRCm38.p6 Ensembl7101,299,006 - 101,302,051 (-)Ensembl
RefSeq Acc Id: ENSMUST00000207740   ⟹   ENSMUSP00000146933
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,912,241 - 100,939,819 (-)Ensembl
GRCm38.p6 Ensembl7101,263,034 - 101,290,612 (-)Ensembl
RefSeq Acc Id: ENSMUST00000209093
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,950,883 - 100,951,256 (-)Ensembl
GRCm38.p6 Ensembl7101,301,676 - 101,302,049 (-)Ensembl
RefSeq Acc Id: NM_001111111   ⟹   NP_001104581
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,938,823 - 100,951,295 (-)NCBI
GRCm387101,289,616 - 101,302,088 (-)NCBI
MGSCv377108,438,130 - 108,450,602 (-)RGD
Celera7101,645,700 - 101,658,255 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_152152
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,938,823 - 100,951,295 (-)NCBI
GRCm387101,289,616 - 101,302,088 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006508225   ⟹   XP_006508288
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,935,521 - 100,951,473 (-)NCBI
GRCm387101,286,325 - 101,302,265 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006508226   ⟹   XP_006508289
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,935,521 - 100,951,471 (-)NCBI
GRCm387101,286,325 - 101,302,264 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006508227   ⟹   XP_006508290
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,935,521 - 100,951,468 (-)NCBI
GRCm387101,286,325 - 101,302,261 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006508228   ⟹   XP_006508291
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,935,521 - 100,951,278 (-)NCBI
GRCm387101,286,325 - 101,302,071 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006508230   ⟹   XP_006508293
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,935,521 - 100,951,097 (-)NCBI
GRCm387101,286,325 - 101,301,890 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006508231   ⟹   XP_006508294
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,935,521 - 100,951,473 (-)NCBI
GRCm387101,286,325 - 101,302,267 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011241916   ⟹   XP_011240218
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,935,521 - 100,951,468 (-)NCBI
GRCm387101,286,325 - 101,302,261 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011241918   ⟹   XP_011240220
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,935,521 - 100,951,258 (-)NCBI
GRCm387101,286,325 - 101,302,051 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030243022   ⟹   XP_030098882
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,935,521 - 100,951,249 (-)NCBI
GRCm387101,286,325 - 101,302,042 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030243023   ⟹   XP_030098883
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,935,521 - 100,951,260 (-)NCBI
GRCm387101,286,325 - 101,302,053 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153475   ⟹   XP_036009368
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,935,521 - 100,951,469 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153476   ⟹   XP_036009369
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,935,521 - 100,951,469 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153477   ⟹   XP_036009370
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,935,521 - 100,951,278 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001778004
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,935,521 - 100,951,469 (-)NCBI
GRCm387101,286,325 - 101,302,263 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003946569
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,935,521 - 100,951,474 (-)NCBI
GRCm387101,286,325 - 101,302,266 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003946570
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,935,526 - 100,951,474 (-)NCBI
GRCm387101,286,325 - 101,302,267 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003946571
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,935,521 - 100,951,470 (-)NCBI
GRCm387101,286,325 - 101,302,263 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004934190
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,935,521 - 100,951,469 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004934191
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,935,521 - 100,951,469 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004934192
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,935,521 - 100,951,469 (-)NCBI
Sequence:
RefSeq Acc Id: XR_378274
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,935,521 - 100,951,469 (-)NCBI
GRCm387101,286,325 - 101,302,262 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001104581   ⟸   NM_001111111
- UniProtKB: D3Z653 (UniProtKB/Swiss-Prot),   Q6PAU0 (UniProtKB/Swiss-Prot),   Q6KAU8 (UniProtKB/Swiss-Prot),   G9M4M8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006508289   ⟸   XM_006508226
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006508294   ⟸   XM_006508231
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006508288   ⟸   XM_006508225
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006508290   ⟸   XM_006508227
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006508291   ⟸   XM_006508228
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006508293   ⟸   XM_006508230
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_011240218   ⟸   XM_011241916
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_011240220   ⟸   XM_011241918
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_030098883   ⟸   XM_030243023
- Peptide Label: isoform X9
RefSeq Acc Id: XP_030098882   ⟸   XM_030243022
- Peptide Label: isoform X7
RefSeq Acc Id: ENSMUSP00000117387   ⟸   ENSMUST00000139609
RefSeq Acc Id: ENSMUSP00000117029   ⟸   ENSMUST00000143630
RefSeq Acc Id: ENSMUSP00000116414   ⟸   ENSMUST00000140553
RefSeq Acc Id: ENSMUSP00000146572   ⟸   ENSMUST00000207121
RefSeq Acc Id: ENSMUSP00000112500   ⟸   ENSMUST00000120267
RefSeq Acc Id: ENSMUSP00000146933   ⟸   ENSMUST00000207740
RefSeq Acc Id: ENSMUSP00000113320   ⟸   ENSMUST00000122116
RefSeq Acc Id: XP_036009369   ⟸   XM_036153476
- Peptide Label: isoform X5
RefSeq Acc Id: XP_036009368   ⟸   XM_036153475
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036009370   ⟸   XM_036153477
- Peptide Label: isoform X9
Protein Domains
Autophagy-related protein

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6KAU8-F1-model_v2 AlphaFold Q6KAU8 1-623 view protein structure

Promoters
RGD ID:8664957
Promoter ID:EPDNEW_M10509
Type:multiple initiation site
Name:Atg16l2_1
Description:Mus musculus autophagy related 16-like 2 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387101,302,053 - 101,302,113EPDNEW
RGD ID:6840664
Promoter ID:MM_KWN:51760
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   Brain,   Kidney,   Lung
Transcripts:OTTMUST00000077436,   OTTMUST00000077437
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367108,438,606 - 108,440,057 (-)MPROMDB
RGD ID:6840662
Promoter ID:MM_KWN:51761
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   Brain,   Kidney
Transcripts:OTTMUST00000077433,   OTTMUST00000077435
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367108,440,456 - 108,441,807 (-)MPROMDB
RGD ID:6840663
Promoter ID:MM_KWN:51762
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   Brain,   Kidney,   Lung
Transcripts:OTTMUST00000077429,   OTTMUST00000077430,   OTTMUST00000077431,   OTTMUST00000077432,   UC009IOE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367108,445,206 - 108,446,257 (-)MPROMDB
RGD ID:6840658
Promoter ID:MM_KWN:51763
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   Spleen
Transcripts:ENSMUST00000049671,   ENSMUST00000084897,   OTTMUST00000077426,   OTTMUST00000077427,   OTTMUST00000077428,   UC009IOF.1,   UC009IOG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367108,450,304 - 108,450,804 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1920933 AgrOrtholog
Ensembl Genes ENSMUSG00000047767 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000120267 ENTREZGENE
  ENSMUST00000120267.9 UniProtKB/Swiss-Prot
  ENSMUST00000122116 ENTREZGENE
  ENSMUST00000122116.8 UniProtKB/Swiss-Prot
  ENSMUST00000139609 ENTREZGENE
  ENSMUST00000139609.8 UniProtKB/Swiss-Prot
  ENSMUST00000140553.2 UniProtKB/TrEMBL
  ENSMUST00000143630.8 UniProtKB/Swiss-Prot
  ENSMUST00000207121.2 UniProtKB/TrEMBL
  ENSMUST00000207740.2 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot
InterPro ATG16 UniProtKB/Swiss-Prot
  Autophagy-rel_prot_16 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G-protein_beta_WD-40_rep UniProtKB/Swiss-Prot
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot
  WD40_repeat UniProtKB/Swiss-Prot
  WD40_repeat_CS UniProtKB/Swiss-Prot
  WD40_repeat_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:73683 UniProtKB/Swiss-Prot
MGD MGI:1920933 ENTREZGENE
NCBI Gene 73683 ENTREZGENE
PANTHER PROTEIN ATG16L2 UniProtKB/Swiss-Prot
  PTHR19878 UniProtKB/Swiss-Prot
Pfam ATG16 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40 UniProtKB/Swiss-Prot
PhenoGen Atg16l2 PhenoGen
PRINTS GPROTEINBRPT UniProtKB/Swiss-Prot
PROSITE WD_REPEATS_1 UniProtKB/Swiss-Prot
  WD_REPEATS_2 UniProtKB/Swiss-Prot
  WD_REPEATS_REGION UniProtKB/Swiss-Prot
SMART WD40 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50978 UniProtKB/Swiss-Prot
UniProt A0A140LHW3_MOUSE UniProtKB/TrEMBL
  A0A140LIS0_MOUSE UniProtKB/TrEMBL
  A16L2_MOUSE UniProtKB/Swiss-Prot
  D3Z653 ENTREZGENE
  D6RHC1_MOUSE UniProtKB/TrEMBL
  G9M4M8 ENTREZGENE
  Q6KAU8 ENTREZGENE
  Q6PAU0 ENTREZGENE
UniProt Secondary D3Z653 UniProtKB/Swiss-Prot
  G9M4M8 UniProtKB/Swiss-Prot
  Q6PAU0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-27 Atg16l2  autophagy related 16 like 2  Atg16l2  autophagy related 16-like 2 (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED
2012-06-19 Atg16l2  autophagy related 16-like 2 (S. cerevisiae)  Atg16l2  autophagy related 16 like 2 (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED