Gm10030 (predicted gene 10030) - Rat Genome Database

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Gene: Gm10030 (predicted gene 10030) Mus musculus
Analyze
Symbol: Gm10030
Name: predicted gene 10030
RGD ID: 1616891
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: ENSMUSG00000057802
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399110,818,567 - 110,837,097 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9110,818,567 - 110,837,135 (+)EnsemblGRCm39 Ensembl
GRCm389110,989,499 - 111,008,029 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9110,989,499 - 111,008,029 (+)EnsemblGRCm38mm10GRCm38
MGSCv379110,909,360 - 110,910,532 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369110,909,360 - 110,910,532 (+)NCBIMGSCv36mm8
Celera9110,713,383 - 110,731,622 (+)NCBICelera
Cytogenetic Map9F2NCBI
cM Map960.79NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in Gm10030
665 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:141
Count of miRNA genes:135
Interacting mature miRNAs:140
Transcripts:ENSMUST00000080872
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63239711120191934Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63239711120191934Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963239711120191934Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975682646114303447Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975682646114303447Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978522698112522808Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979279863113279941Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981680321115680445Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982792386116792481Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982792386116792481Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982792386116792481Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984406017118406120Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986107600120107729Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986121898120118690Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986625682120625682Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987677199121677199Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989162124123162124Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989289476123289595Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989440541123440541Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989859058118767089Mouse
12910770Splic1_mspleen iron content 1 (mouse)991291078124359700Mouse
12910772Lvic6_mliver iron content 6 (mouse)991291078124359700Mouse
12910773Splic3_mspleen iron content 3 (mouse)991291078124359700Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991518283124359700Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991518283124359700Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991518283124359700Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991518283124359700Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991518283124359700Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991518283124359700Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991560372124359700Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991560372124359700Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991560372124359700Mouse
1301484Bwq6_mbody weight (mouse)Not determined993591658124359700Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993591658124359700Mouse
14746992Manh67_mmandible shape 67 (mouse)993865836124359700Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994863354112701997Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996746658124359700Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9100889929124359700Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9101829255124359700Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9101829255124359700Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103118511124359700Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103118511124359700Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103118511124359700Mouse
13515058Adip20d_madiposity 20d (mouse)9108744078118744078Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000080872
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9110,833,879 - 110,835,898 (+)Ensembl
GRCm38.p6 Ensembl9111,004,811 - 111,006,830 (+)Ensembl
RefSeq Acc Id: ENSMUST00000197279
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9110,829,442 - 110,835,593 (+)Ensembl
GRCm38.p6 Ensembl9111,000,374 - 111,006,525 (+)Ensembl
RefSeq Acc Id: ENSMUST00000197321
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9110,818,567 - 110,837,135 (+)Ensembl
GRCm38.p6 Ensembl9110,989,499 - 111,008,029 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240913
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9110,821,812 - 110,837,133 (+)Ensembl
RefSeq Acc Id: ENSMUST00000241368
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9110,821,825 - 110,837,128 (+)Ensembl
RefSeq Acc Id: ENSMUST00000242131
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9110,821,846 - 110,837,098 (+)Ensembl
RefSeq Acc Id: ENSMUST00000242348
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9110,821,854 - 110,837,102 (+)Ensembl
RefSeq Acc Id: ENSMUST00000242596
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9110,821,825 - 110,837,133 (+)Ensembl
RefSeq Acc Id: ENSMUST00000243499
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9110,821,833 - 110,837,128 (+)Ensembl
RefSeq Acc Id: ENSMUST00000243535
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9110,821,816 - 110,837,128 (+)Ensembl
RefSeq Acc Id: ENSMUST00000243647
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9110,821,825 - 110,837,098 (+)Ensembl
RefSeq Acc Id: ENSMUST00000244088
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9110,821,849 - 110,837,128 (+)Ensembl
RefSeq Acc Id: ENSMUST00000244852
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9110,821,834 - 110,837,102 (+)Ensembl
RefSeq Acc Id: ENSMUST00000245025
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9110,821,850 - 110,837,108 (+)Ensembl
RefSeq Acc Id: ENSMUST00000245428
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9110,821,819 - 110,837,122 (+)Ensembl
RefSeq Acc Id: ENSMUST00000245495
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9110,821,825 - 110,837,128 (+)Ensembl
RefSeq Acc Id: NR_152179
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399110,818,567 - 110,837,097 (+)NCBI
GRCm389110,989,499 - 111,008,029 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein BAC39773 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000057802 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000197321 ENTREZGENE
MGD MGI:3641798 ENTREZGENE
NCBI Gene 791282 ENTREZGENE
PhenoGen Gm10030 PhenoGen
RNAcentral URS00009B67A6 RNACentral
UniProt Q8C346_MOUSE UniProtKB/TrEMBL