1810064F22Rik (RIKEN cDNA 1810064F22 gene) - Rat Genome Database

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Gene: 1810064F22Rik (RIKEN cDNA 1810064F22 gene) Mus musculus
Analyze
Symbol: 1810064F22Rik
Name: RIKEN cDNA 1810064F22 gene
RGD ID: 1616759
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: PREDICTED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39922,118,082 - 22,125,156 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl922,108,259 - 22,125,156 (-)EnsemblGRCm39 Ensembl
GRCm38922,206,786 - 22,213,860 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl922,196,963 - 22,213,860 (-)EnsemblGRCm38mm10GRCm38
MGSCv37922,011,230 - 22,018,304 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36921,957,188 - 21,964,262 (-)NCBIMGSCv36mm8
Celera919,477,017 - 19,484,091 (-)NCBICelera
Cytogenetic Map9A3NCBI
cM Map98.6NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

Variants

.
Variants in 1810064F22Rik
269 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:114
Count of miRNA genes:109
Interacting mature miRNAs:112
Transcripts:ENSMUST00000167359
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300899Chol6_mcholesterol 6 (mouse)Not determined9129902913Mouse
13434920Dcollq1_mdifferential colonization level QTL 1 (mouse)9130341840Mouse
35673312Ari7_mantibody response to influenza 7, day 45, IgG3 (mouse)9780000122211296Mouse
1300849Sles4_msystemic lupus erythmatosus suppressor 4 (mouse)Not determined9910756237306370Mouse
13504833Bglu19_mblood glucose level 19 (mouse)9991076843910768Mouse
1300532Tbs2_mtuberculosis severity 2 (mouse)Not determined91236997046370114Mouse
10043917Obq37_mobesity QTL 37 (mouse)Not determined91339117547391175Mouse
1357637Si5lq2_mserum IGFBP-5 level QTL 2 (mouse)Not determined91541175149411890Mouse
4141591Cq4_mcholesterol QTL 4 (mouse)Not determined91541175149411890Mouse
1301421Lgth4_mbody length 4 (mouse)Not determined91541175149411890Mouse
4141447Cfmq2_mcystic fibrosis modifier QTL 2 (mouse)Not determined91541175149411890Mouse
12790993Adq1_maortic diameter QTL 1 (mouse)91574962749749627Mouse
11354951Pdcc3_mplasmacytoid dentritic cell compartment 3 (mouse)91574962749749627Mouse
12790997Adq2_maortic diameter QTL 2 (mouse)91574962749749627Mouse
12880415V125Dq7_mvitamin D active form serum level QTL 7 (mouse)91601129650011296Mouse
12880416V125Dq8_mvitamin D active form serum level QTL 8 (mouse)91601129650011296Mouse
13504834Hdlq109_mHDL QTL 109 (mouse)91670964150709641Mouse
1357465Vtbt6_mvertebral trabecular bone trait 6 (mouse)Not determined91697884050978943Mouse
1300643Pvcan2_mprotection against vaginal candidiasis 2 (mouse)Not determined91994340653943525Mouse
1301439Morph2_mmorphine antinociception 2 (mouse)Not determined92015336254153492Mouse
1301883Skull12_mskull morphology 12 (mouse)Not determined92030619754306370Mouse
1301045Sluc10_msusceptibility to lung cancer 10 (mouse)Not determined92030619754306370Mouse
10043950Pbft5_mpercent body fat 5 (mouse)Not determined92030619754306370Mouse
4142352Lmr17_mleishmaniasis resistance 17 (mouse)Not determined92030619754306370Mouse
12904939Edlmmq8_mextensor digitorum longus muscle mass QTL 8 (mouse)92085274054852740Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000167359
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl922,118,637 - 22,119,842 (-)Ensembl
GRCm38.p6 Ensembl922,207,341 - 22,208,546 (-)Ensembl
RefSeq Acc Id: ENSMUST00000187399
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl922,108,259 - 22,125,135 (-)Ensembl
GRCm38.p6 Ensembl922,196,963 - 22,213,839 (-)Ensembl
RefSeq Acc Id: ENSMUST00000188595
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl922,118,077 - 22,125,156 (-)Ensembl
GRCm38.p6 Ensembl922,206,781 - 22,213,860 (-)Ensembl
RefSeq Acc Id: NR_027981
RefSeq Status: PREDICTED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39922,118,082 - 22,125,156 (-)NCBI
GRCm38922,206,786 - 22,213,860 (-)ENTREZGENE
MGSCv37922,011,230 - 22,018,304 (-)RGD
Celera919,477,017 - 19,484,091 (-)RGD
cM Map9 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein AAI47376 (Get FASTA)   NCBI Sequence Viewer  
  BAE25080 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences

Promoters
RGD ID:6843941
Promoter ID:MM_KWN:56620
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:NR_027981
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36922,018,061 - 22,018,561 (-)MPROMDB
RGD ID:8669030
Promoter ID:EPDNEW_M12545
Type:single initiation site
Name:1810064F22Rik_1
Description:Mus musculus RIKEN cDNA 1810064F22 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38922,213,860 - 22,213,920EPDNEW
RGD ID:15093559
Promoter ID:EPDNEWNC_M1458
Type:single initiation site
Name:1810064F22Rik_1
Description:RIKEN cDNA 1810064F22 gene [Source:MGISymbol;Acc:MGI:1917112]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38922,213,860 - 22,213,920EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000090925 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000188595 ENTREZGENE
InterPro TLV/ENV_coat_polyprotein UniProtKB/TrEMBL
MGD MGI:1917112 ENTREZGENE
NCBI Gene 69862 ENTREZGENE
Pfam TLV_coat UniProtKB/TrEMBL
PhenoGen 1810064F22Rik PhenoGen
RNAcentral URS000075EA87 RNACentral
UniProt Q3UQG2_MOUSE UniProtKB/TrEMBL